Wall clock time and date at job start Tue Mar 31 2020 17:14:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.47311 * 2 1 4 4 C 1.50706 * 109.47149 * 240.00335 * 2 1 3 5 5 H 1.08000 * 119.99913 * 275.00137 * 4 2 1 6 6 C 1.37873 * 120.00098 * 94.99962 * 4 2 1 7 7 N 1.31517 * 120.00019 * 184.91398 * 6 4 2 8 8 Si 1.86803 * 120.00311 * 4.91234 * 6 4 2 9 9 H 1.48504 * 109.46957 * 84.83496 * 8 6 4 10 10 H 1.48490 * 109.47335 * 204.83579 * 8 6 4 11 11 H 1.48500 * 109.46866 * 324.83844 * 8 6 4 12 12 N 1.46488 * 109.47308 * 120.00210 * 2 1 3 13 13 C 1.46498 * 120.00478 * 60.00072 * 12 2 1 14 14 S 1.65599 * 120.00190 * 240.00214 * 12 2 1 15 15 O 1.42105 * 104.27719 * 333.92406 * 14 12 2 16 16 O 1.42107 * 104.28012 * 206.07142 * 14 12 2 17 17 C 1.81399 * 104.45373 * 89.99678 * 14 12 2 18 18 C 1.52994 * 109.47606 * 180.02562 * 17 14 12 19 19 C 1.52993 * 109.47345 * 180.02562 * 18 17 14 20 20 N 1.46904 * 109.47536 * 179.97438 * 19 18 17 21 21 C 1.46961 * 110.99739 * 66.17294 * 20 19 18 22 22 C 1.53050 * 109.36339 * 183.17053 * 21 20 19 23 23 N 1.46953 * 109.37982 * 301.63144 * 22 21 20 24 24 C 1.46908 * 110.99797 * 183.17591 * 23 22 21 25 25 C 1.46958 * 110.88312 * 59.31356 * 23 22 21 26 26 C 1.46948 * 111.00312 * 189.99833 * 20 19 18 27 27 H 1.08997 * 109.47364 * 294.98118 * 1 2 3 28 28 H 1.09007 * 109.47234 * 54.97920 * 1 2 3 29 29 H 1.09001 * 109.47080 * 174.97401 * 1 2 3 30 30 H 0.97004 * 119.99895 * 179.97438 * 7 6 4 31 31 H 1.09006 * 109.46947 * 270.00684 * 13 12 2 32 32 H 1.09001 * 109.47117 * 29.99856 * 13 12 2 33 33 H 1.08998 * 109.47884 * 150.00167 * 13 12 2 34 34 H 1.09005 * 109.46717 * 60.00139 * 17 14 12 35 35 H 1.08999 * 109.46984 * 300.00793 * 17 14 12 36 36 H 1.08997 * 109.47381 * 59.99580 * 18 17 14 37 37 H 1.09004 * 109.47110 * 299.99882 * 18 17 14 38 38 H 1.08997 * 109.47871 * 59.99675 * 19 18 17 39 39 H 1.09003 * 109.47156 * 299.99603 * 19 18 17 40 40 H 1.09000 * 109.46935 * 63.21529 * 21 20 19 41 41 H 1.08998 * 109.50692 * 303.15142 * 21 20 19 42 42 H 1.09001 * 109.48763 * 181.65912 * 22 21 20 43 43 H 1.09000 * 109.48869 * 61.61589 * 22 21 20 44 44 H 1.09000 * 109.46768 * 60.00374 * 24 23 22 45 45 H 1.09000 * 109.47045 * 180.02562 * 24 23 22 46 46 H 1.08997 * 109.47248 * 300.00281 * 24 23 22 47 47 H 1.08999 * 109.48858 * 60.64086 * 25 23 22 48 48 H 1.08996 * 109.48929 * 180.68377 * 25 23 22 49 49 H 1.09001 * 109.49387 * 56.84426 * 26 20 19 50 50 H 1.09005 * 109.49049 * 296.77606 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2306 5 1 2.1354 -1.7854 -1.2292 6 6 2.3602 0.0122 -2.3581 7 7 2.7059 -0.6130 -3.4623 8 14 2.3134 1.8792 -2.3175 9 1 3.5990 2.3950 -1.7823 10 1 2.1056 2.3991 -3.6928 11 1 1.1985 2.3275 -1.4450 12 7 2.0183 -0.6906 1.1960 13 6 1.6645 -2.0932 1.4279 14 16 2.9703 0.1141 2.2861 15 8 3.6005 1.1302 1.5181 16 8 3.7316 -0.9107 2.9103 17 6 1.7964 0.8412 3.4625 18 6 2.5631 1.6210 4.5323 19 6 1.5730 2.2337 5.5248 20 7 2.3093 2.9820 6.5524 21 6 2.9850 4.1501 5.9705 22 6 3.8026 4.8557 7.0549 23 7 2.9123 5.2580 8.1527 24 6 3.6487 6.0063 9.1804 25 6 2.2371 4.0896 8.7345 26 6 1.4191 3.3842 7.6502 27 1 -0.3634 0.4340 0.9315 28 1 -0.3634 0.5898 -0.8416 29 1 -0.3633 -1.0237 -0.0900 30 1 2.9363 -0.1047 -4.2557 31 1 0.7375 -2.1444 1.9992 32 1 1.5295 -2.5969 0.4707 33 1 2.4629 -2.5819 1.9863 34 1 1.2176 0.0478 3.9355 35 1 1.1232 1.5161 2.9338 36 1 3.1417 2.4144 4.0591 37 1 3.2365 0.9464 5.0611 38 1 0.9948 1.4402 5.9981 39 1 0.8994 2.9084 4.9964 40 1 2.2405 4.8386 5.5706 41 1 3.6480 3.8251 5.1688 42 1 4.2811 5.7393 6.6324 43 1 4.5652 4.1761 7.4354 44 1 4.0829 6.9021 8.7364 45 1 2.9663 6.2914 9.9811 46 1 4.4433 5.3802 9.5863 47 1 2.9816 3.4010 9.1341 48 1 1.5747 4.4146 9.5368 49 1 0.9405 2.5008 8.0728 50 1 0.6568 4.0642 7.2698 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601337140.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:14:28 Heat of formation + Delta-G solvation = -82.922645 kcal Electronic energy + Delta-G solvation = -27893.062184 eV Core-core repulsion = 24081.601178 eV Total energy + Delta-G solvation = -3811.461005 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.33959 -38.20857 -37.92199 -37.23118 -36.88979 -34.47685 -34.31761 -31.93692 -31.61398 -29.74254 -27.26122 -27.08058 -26.56224 -24.85975 -24.22519 -22.57318 -21.96904 -20.78576 -19.68398 -19.26680 -18.38868 -17.66969 -17.35823 -16.84707 -16.66336 -16.25345 -16.02614 -15.84704 -15.74599 -15.36453 -15.13118 -15.00542 -14.63867 -14.48081 -14.34134 -13.61569 -13.60334 -13.48638 -13.39473 -13.34453 -13.15570 -13.08733 -13.03130 -12.84806 -12.76846 -12.57022 -12.54228 -12.46380 -12.26234 -12.08220 -11.94478 -11.85520 -11.75401 -11.64666 -11.34508 -11.23117 -10.71245 -9.57643 -9.46743 -9.28760 -8.31498 -6.34313 -0.66286 1.29583 1.40848 1.43483 1.81754 2.33141 2.74978 2.96039 3.05465 3.07385 3.23904 3.67640 3.76720 3.88165 3.93196 4.06413 4.10084 4.20611 4.26453 4.39002 4.39765 4.49205 4.52181 4.57243 4.60861 4.64217 4.70002 4.75544 4.81977 4.84447 4.87196 4.90357 4.93576 4.98370 4.99031 4.99999 5.02472 5.08610 5.19176 5.40666 5.54427 5.60684 5.90867 5.93275 6.00749 6.10657 6.13455 6.35000 6.71868 7.30923 8.84537 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.019465 B = 0.002736 C = 0.002588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1438.108115 B =10230.833870 C =10818.404249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.232 3.768 3 H 0.049 0.951 4 C -0.516 4.516 5 H 0.047 0.953 6 C 0.018 3.982 7 N -0.941 5.941 8 Si 0.915 3.085 9 H -0.281 1.281 10 H -0.280 1.280 11 H -0.228 1.228 12 N -0.991 5.991 13 C 0.089 3.911 14 S 2.585 3.415 15 O -1.002 7.002 16 O -0.995 6.995 17 C -0.598 4.598 18 C -0.115 4.115 19 C 0.069 3.931 20 N -0.553 5.553 21 C 0.047 3.953 22 C 0.058 3.942 23 N -0.558 5.558 24 C 0.025 3.975 25 C 0.057 3.943 26 C 0.057 3.943 27 H 0.070 0.930 28 H 0.049 0.951 29 H 0.057 0.943 30 H 0.266 0.734 31 H 0.083 0.917 32 H 0.060 0.940 33 H 0.068 0.932 34 H 0.167 0.833 35 H 0.152 0.848 36 H 0.070 0.930 37 H 0.083 0.917 38 H 0.098 0.902 39 H 0.047 0.953 40 H 0.040 0.960 41 H 0.080 0.920 42 H 0.087 0.913 43 H 0.036 0.964 44 H 0.072 0.928 45 H 0.078 0.922 46 H 0.025 0.975 47 H 0.036 0.964 48 H 0.094 0.906 49 H 0.095 0.905 50 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.551 10.683 26.813 29.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.127 3.873 3 H 0.067 0.933 4 C -0.556 4.556 5 H 0.065 0.935 6 C -0.181 4.181 7 N -0.581 5.581 8 Si 0.739 3.261 9 H -0.207 1.207 10 H -0.206 1.206 11 H -0.150 1.150 12 N -0.829 5.829 13 C -0.056 4.056 14 S 2.686 3.314 15 O -0.993 6.993 16 O -0.986 6.986 17 C -0.732 4.732 18 C -0.155 4.155 19 C -0.060 4.060 20 N -0.278 5.278 21 C -0.081 4.081 22 C -0.071 4.071 23 N -0.284 5.284 24 C -0.122 4.122 25 C -0.071 4.071 26 C -0.071 4.071 27 H 0.088 0.912 28 H 0.068 0.932 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.102 0.898 32 H 0.079 0.921 33 H 0.086 0.914 34 H 0.185 0.815 35 H 0.170 0.830 36 H 0.089 0.911 37 H 0.102 0.898 38 H 0.116 0.884 39 H 0.065 0.935 40 H 0.059 0.941 41 H 0.098 0.902 42 H 0.105 0.895 43 H 0.054 0.946 44 H 0.091 0.909 45 H 0.097 0.903 46 H 0.044 0.956 47 H 0.054 0.946 48 H 0.112 0.888 49 H 0.114 0.886 50 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -5.546 10.713 26.595 29.204 hybrid contribution 0.081 0.520 -0.749 0.915 sum -5.465 11.233 25.846 28.707 Atomic orbital electron populations 1.22151 0.95081 1.02099 1.00986 1.18991 0.93327 0.92389 0.82596 0.93316 1.21485 1.42919 0.94772 0.96413 0.93465 1.25784 0.94276 1.02833 0.95165 1.70024 1.47804 1.37695 1.02589 0.86226 0.80474 0.81380 0.78040 1.20721 1.20555 1.15018 1.57333 1.70436 1.20857 1.34279 1.21497 1.00986 0.80808 1.02333 1.05395 0.76677 0.74034 0.75341 1.93527 1.74911 1.61600 1.69247 1.93482 1.69460 1.57044 1.78574 1.30407 1.16124 1.13402 1.13234 1.21393 0.98787 0.99873 0.95430 1.22021 0.94217 0.97921 0.91804 1.62134 1.31439 1.23273 1.10994 1.22281 0.97997 0.91002 0.96836 1.22154 0.93881 0.98953 0.92086 1.62205 1.31137 1.23795 1.11224 1.22384 0.97289 0.97954 0.94610 1.22213 0.97675 0.90664 0.96597 1.22214 0.93832 0.99485 0.91551 0.91157 0.93245 0.92374 0.92478 0.89816 0.92094 0.91378 0.81504 0.82969 0.91109 0.89794 0.88358 0.93524 0.94124 0.90163 0.89509 0.94596 0.90879 0.90295 0.95600 0.94590 0.88762 0.88642 0.94177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.04 9.10 71.98 0.65 -4.39 16 2 C 0.23 10.21 2.23 44.25 0.10 10.31 16 3 H 0.05 2.24 4.02 -2.39 -0.01 2.23 16 4 C -0.52 -28.75 8.72 25.60 0.22 -28.53 16 5 H 0.05 2.88 6.82 -2.91 -0.02 2.86 16 6 C 0.02 1.06 5.47 84.65 0.46 1.52 16 7 N -0.94 -58.88 13.96 21.45 0.30 -58.58 16 8 Si 0.91 44.75 26.99 68.60 1.85 46.60 16 9 H -0.28 -14.45 7.11 99.48 0.71 -13.74 16 10 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 11 H -0.23 -9.65 6.82 99.48 0.68 -8.98 16 12 N -0.99 -37.67 2.99 -520.47 -1.56 -39.23 16 13 C 0.09 2.91 9.79 127.77 1.25 4.16 16 14 S 2.59 91.24 5.41 -56.49 -0.31 90.93 16 15 O -1.00 -44.77 16.57 -127.65 -2.12 -46.89 16 16 O -1.00 -39.29 16.57 -127.65 -2.12 -41.41 16 17 C -0.60 -12.33 6.18 71.98 0.44 -11.89 16 18 C -0.12 -2.34 5.15 30.59 0.16 -2.18 16 19 C 0.07 1.11 4.96 86.30 0.43 1.54 16 20 N -0.55 -9.63 4.71 -895.72 -4.22 -13.85 16 21 C 0.05 0.85 5.41 86.31 0.47 1.32 16 22 C 0.06 0.95 5.62 86.31 0.49 1.44 16 23 N -0.56 -8.63 4.97 -921.93 -4.58 -13.21 16 24 C 0.03 0.29 9.60 127.69 1.23 1.52 16 25 C 0.06 0.77 5.62 86.31 0.49 1.26 16 26 C 0.06 0.80 5.61 86.31 0.48 1.29 16 27 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 28 H 0.05 1.78 8.14 -2.38 -0.02 1.76 16 29 H 0.06 1.98 7.84 -2.39 -0.02 1.97 16 30 H 0.27 15.67 8.31 -92.70 -0.77 14.90 16 31 H 0.08 1.94 8.14 -2.38 -0.02 1.92 16 32 H 0.06 2.27 6.56 -2.39 -0.02 2.25 16 33 H 0.07 2.20 6.91 -2.39 -0.02 2.18 16 34 H 0.17 2.33 8.14 -2.39 -0.02 2.31 16 35 H 0.15 2.62 8.14 -2.39 -0.02 2.60 16 36 H 0.07 1.54 6.49 -2.39 -0.02 1.53 16 37 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 38 H 0.10 1.24 8.03 -2.39 -0.02 1.22 16 39 H 0.05 0.71 8.12 -2.39 -0.02 0.69 16 40 H 0.04 0.76 8.14 -2.39 -0.02 0.75 16 41 H 0.08 1.51 6.34 -2.39 -0.02 1.50 16 42 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 43 H 0.04 0.65 8.14 -2.39 -0.02 0.63 16 44 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 45 H 0.08 0.73 8.13 -2.39 -0.02 0.71 16 46 H 0.03 0.30 8.14 -2.39 -0.02 0.28 16 47 H 0.04 0.54 8.14 -2.39 -0.02 0.52 16 48 H 0.09 0.97 8.13 -2.39 -0.02 0.96 16 49 H 0.10 1.05 8.07 -2.39 -0.02 1.03 16 50 H 0.04 0.60 8.14 -2.38 -0.02 0.58 16 Total: -1.00 -77.50 396.29 -5.01 -82.51 By element: Atomic # 1 Polarization: 14.88 SS G_CDS: 0.86 Total: 15.74 kcal Atomic # 6 Polarization: -29.50 SS G_CDS: 6.87 Total: -22.63 kcal Atomic # 7 Polarization: -114.81 SS G_CDS: -10.06 Total: -124.86 kcal Atomic # 8 Polarization: -84.06 SS G_CDS: -4.23 Total: -88.29 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 1.85 Total: 46.60 kcal Atomic # 16 Polarization: 91.24 SS G_CDS: -0.31 Total: 90.93 kcal Total: -77.50 -5.01 -82.51 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601337140.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.412 kcal (2) G-P(sol) polarization free energy of solvation -77.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds