Wall clock time and date at job start Tue Mar 31 2020 17:14:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 109.47427 * 2 1 4 4 C 1.50701 * 109.47419 * 120.00339 * 2 1 3 5 5 H 1.08002 * 119.99761 * 119.99343 * 4 2 1 6 6 C 1.37871 * 119.99694 * 300.27906 * 4 2 1 7 7 N 1.31514 * 120.00482 * 359.71466 * 6 4 2 8 8 Si 1.86801 * 119.99746 * 179.72062 * 6 4 2 9 9 H 1.48494 * 109.47230 * 359.97438 * 8 6 4 10 10 H 1.48505 * 109.47301 * 119.99669 * 8 6 4 11 11 H 1.48498 * 109.47430 * 239.99516 * 8 6 4 12 12 N 1.46499 * 109.47185 * 240.00729 * 2 1 3 13 13 C 1.46506 * 119.99453 * 300.00085 * 12 2 1 14 14 S 1.65591 * 120.00485 * 119.99872 * 12 2 1 15 15 O 1.42107 * 104.28088 * 206.06980 * 14 12 2 16 16 O 1.42103 * 104.27876 * 333.93112 * 14 12 2 17 17 C 1.81401 * 104.44895 * 90.00062 * 14 12 2 18 18 C 1.53002 * 109.46956 * 180.02562 * 17 14 12 19 19 C 1.53007 * 109.47084 * 179.97438 * 18 17 14 20 20 N 1.46899 * 109.47089 * 179.97438 * 19 18 17 21 21 C 1.46957 * 110.99892 * 293.79718 * 20 19 18 22 22 C 1.53053 * 109.36364 * 176.81287 * 21 20 19 23 23 N 1.46964 * 109.36309 * 58.40113 * 22 21 20 24 24 C 1.46899 * 110.99779 * 176.81255 * 23 22 21 25 25 C 1.46950 * 110.88157 * 300.68347 * 23 22 21 26 26 C 1.46962 * 110.99508 * 170.00351 * 20 19 18 27 27 H 1.09004 * 109.46783 * 299.99852 * 1 2 3 28 28 H 1.09005 * 109.46870 * 59.99511 * 1 2 3 29 29 H 1.08998 * 109.47156 * 179.97438 * 1 2 3 30 30 H 0.96995 * 120.00207 * 179.97438 * 7 6 4 31 31 H 1.09002 * 109.47497 * 90.00369 * 13 12 2 32 32 H 1.09004 * 109.46702 * 209.99812 * 13 12 2 33 33 H 1.08998 * 109.47259 * 329.99392 * 13 12 2 34 34 H 1.08998 * 109.47545 * 299.99847 * 17 14 12 35 35 H 1.09000 * 109.47119 * 60.00395 * 17 14 12 36 36 H 1.08998 * 109.47227 * 299.99580 * 18 17 14 37 37 H 1.08991 * 109.47186 * 60.00300 * 18 17 14 38 38 H 1.08995 * 109.47272 * 300.00234 * 19 18 17 39 39 H 1.09001 * 109.47134 * 59.99774 * 19 18 17 40 40 H 1.08999 * 109.49057 * 296.78108 * 21 20 19 41 41 H 1.08997 * 109.49062 * 56.84915 * 21 20 19 42 42 H 1.08997 * 109.48606 * 298.44074 * 22 21 20 43 43 H 1.08997 * 109.51244 * 178.38118 * 22 21 20 44 44 H 1.08996 * 109.46925 * 183.80374 * 24 23 22 45 45 H 1.08998 * 109.46871 * 303.79847 * 24 23 22 46 46 H 1.08997 * 109.47243 * 63.80186 * 24 23 22 47 47 H 1.09009 * 109.48682 * 299.35293 * 25 23 22 48 48 H 1.09004 * 109.50876 * 179.29767 * 25 23 22 49 49 H 1.09003 * 109.48854 * 303.14898 * 26 20 19 50 50 H 1.08998 * 109.49294 * 63.21993 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1312 6 6 1.6946 -0.2428 2.4826 7 7 0.9386 0.8265 2.6034 8 14 2.3109 -1.1280 4.0077 9 1 3.1365 -2.2943 3.6035 10 1 3.1332 -0.1974 4.8220 11 1 1.1526 -1.5965 4.8103 12 7 2.0183 -0.6904 -1.1962 13 6 1.6643 -2.0931 -1.4282 14 16 2.9703 0.1143 -2.2862 15 8 2.7432 -0.5610 -3.5158 16 8 2.6122 1.4798 -2.1233 17 6 4.6648 -0.1729 -1.7059 18 6 5.6504 0.5298 -2.6419 19 6 7.0796 0.2881 -2.1521 20 7 8.0259 0.9621 -3.0510 21 6 8.0096 0.3507 -4.3872 22 6 8.9471 1.1294 -5.3131 23 7 10.3046 1.1220 -4.7502 24 6 11.2509 1.7961 -5.6492 25 6 10.3209 1.7333 -3.4140 26 6 9.3834 0.9547 -2.4881 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 0.7006 1.1552 3.4844 31 1 0.7375 -2.1442 -1.9995 32 1 2.4628 -2.5817 -1.9866 33 1 1.5295 -2.5968 -0.4710 34 1 4.7758 0.2249 -0.6972 35 1 4.8700 -1.2434 -1.6990 36 1 5.5397 0.1324 -3.6508 37 1 5.4451 1.6002 -2.6484 38 1 7.1901 0.6857 -1.1433 39 1 7.2852 -0.7824 -2.1451 40 1 8.3443 -0.6843 -4.3177 41 1 6.9964 0.3794 -4.7880 42 1 8.5968 2.1575 -5.4042 43 1 8.9589 0.6607 -6.2971 44 1 12.2585 1.7174 -5.2412 45 1 11.2186 1.3238 -6.6310 46 1 10.9777 2.8471 -5.7424 47 1 9.9862 2.7684 -3.4836 48 1 11.3341 1.7050 -3.0130 49 1 9.3717 1.4238 -1.5043 50 1 9.7337 -0.0735 -2.3970 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601337141.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:14:33 Heat of formation + Delta-G solvation = -59.227051 kcal Electronic energy + Delta-G solvation = -27819.054786 eV Core-core repulsion = 24008.621298 eV Total energy + Delta-G solvation = -3810.433487 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -39.58902 -36.56032 -36.39871 -36.15923 -35.31495 -33.31867 -32.62390 -31.20667 -29.09592 -28.91818 -25.85726 -25.42403 -25.19686 -24.08031 -23.44743 -21.37540 -20.63473 -20.03664 -18.16014 -16.95493 -16.65665 -16.44754 -15.94711 -15.69847 -15.47548 -15.27844 -15.14380 -14.86044 -14.64814 -14.32307 -14.10859 -13.47434 -13.22032 -12.83670 -12.72691 -12.66480 -12.59499 -12.21975 -11.97503 -11.93842 -11.79827 -11.77097 -11.52968 -11.51814 -11.36160 -11.26545 -11.20273 -11.04999 -10.97230 -10.88841 -10.70959 -10.40763 -10.28352 -10.18696 -10.00137 -9.23528 -8.74322 -8.51573 -8.51183 -7.91479 -6.12449 -4.21860 0.86576 3.20958 3.28884 3.30754 3.36614 3.58448 3.64990 4.30888 4.39582 4.57486 4.61493 4.70022 4.75632 4.89289 4.93234 4.97914 5.07157 5.15274 5.17876 5.21081 5.22557 5.28416 5.40408 5.47506 5.50912 5.54373 5.62130 5.63190 5.70899 5.75362 5.78139 5.97881 6.08008 6.19780 6.34082 6.61541 6.64344 6.66647 6.86809 6.87452 6.88192 6.91755 7.13939 7.46854 7.60616 7.77131 8.03660 8.23888 8.82002 9.45073 10.92343 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.015815 B = 0.002793 C = 0.002507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1770.022677 B =10022.984415 C =11165.009599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.265 3.735 3 H 0.061 0.939 4 C -0.531 4.531 5 H 0.063 0.937 6 C 0.065 3.935 7 N -0.885 5.885 8 Si 0.895 3.105 9 H -0.274 1.274 10 H -0.283 1.283 11 H -0.283 1.283 12 N -0.984 5.984 13 C 0.106 3.894 14 S 2.607 3.393 15 O -0.977 6.977 16 O -0.956 6.956 17 C -0.635 4.635 18 C -0.106 4.106 19 C 0.065 3.935 20 N -0.542 5.542 21 C 0.049 3.951 22 C 0.056 3.944 23 N -0.547 5.547 24 C 0.025 3.975 25 C 0.057 3.943 26 C 0.056 3.944 27 H 0.092 0.908 28 H 0.013 0.987 29 H 0.031 0.969 30 H 0.264 0.736 31 H 0.044 0.956 32 H 0.049 0.951 33 H 0.079 0.921 34 H 0.139 0.861 35 H 0.125 0.875 36 H 0.072 0.928 37 H 0.085 0.915 38 H 0.082 0.918 39 H 0.039 0.961 40 H 0.044 0.956 41 H 0.085 0.915 42 H 0.044 0.956 43 H 0.079 0.921 44 H 0.067 0.933 45 H 0.068 0.932 46 H 0.026 0.974 47 H 0.044 0.956 48 H 0.078 0.922 49 H 0.082 0.918 50 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.362 -1.149 -11.656 20.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.162 3.838 3 H 0.079 0.921 4 C -0.570 4.570 5 H 0.082 0.918 6 C -0.138 4.138 7 N -0.523 5.523 8 Si 0.723 3.277 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.209 1.209 12 N -0.824 5.824 13 C -0.040 4.040 14 S 2.700 3.300 15 O -0.967 6.967 16 O -0.947 6.947 17 C -0.763 4.763 18 C -0.145 4.145 19 C -0.064 4.064 20 N -0.267 5.267 21 C -0.079 4.079 22 C -0.072 4.072 23 N -0.272 5.272 24 C -0.123 4.123 25 C -0.072 4.072 26 C -0.072 4.072 27 H 0.111 0.889 28 H 0.033 0.967 29 H 0.050 0.950 30 H 0.074 0.926 31 H 0.062 0.938 32 H 0.068 0.932 33 H 0.097 0.903 34 H 0.158 0.842 35 H 0.143 0.857 36 H 0.091 0.909 37 H 0.104 0.896 38 H 0.101 0.899 39 H 0.058 0.942 40 H 0.062 0.938 41 H 0.103 0.897 42 H 0.062 0.938 43 H 0.098 0.902 44 H 0.086 0.914 45 H 0.086 0.914 46 H 0.045 0.955 47 H 0.062 0.938 48 H 0.097 0.903 49 H 0.100 0.900 50 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 15.975 -0.549 -12.253 20.140 hybrid contribution 0.774 -0.849 1.511 1.898 sum 16.749 -1.398 -10.742 19.946 Atomic orbital electron populations 1.22031 0.97852 0.99615 1.00806 1.18767 0.92097 0.92888 0.80023 0.92105 1.21455 1.32030 1.13259 0.90269 0.91837 1.24932 0.94913 0.94964 0.99012 1.69891 1.36016 1.22597 1.23750 0.86495 0.78649 0.79610 0.82927 1.19821 1.20951 1.20941 1.57429 1.63536 1.21433 1.39983 1.21193 0.99147 0.81935 1.01723 1.04934 0.76575 0.74428 0.74050 1.93520 1.84408 1.75783 1.42974 1.93573 1.81037 1.33792 1.86254 1.30728 1.24056 1.09921 1.11570 1.21274 0.93798 1.01616 0.97846 1.22064 0.90872 0.96788 0.96657 1.62143 1.06761 1.54980 1.02862 1.22269 0.99800 0.96506 0.89288 1.22190 0.87657 0.99764 0.97615 1.62166 1.07382 1.54659 1.03031 1.22339 0.96387 0.96525 0.97034 1.22175 0.99343 0.96650 0.88991 1.22157 0.87763 0.99548 0.97721 0.88945 0.96745 0.94955 0.92635 0.93754 0.93213 0.90271 0.84246 0.85703 0.90899 0.89607 0.89930 0.94230 0.93796 0.89654 0.93756 0.90224 0.91391 0.91361 0.95530 0.93809 0.90322 0.89997 0.93925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.43 8.97 37.16 0.33 -3.09 16 2 C 0.27 6.39 2.57 -69.08 -0.18 6.21 16 3 H 0.06 1.61 6.87 -51.93 -0.36 1.25 16 4 C -0.53 -13.30 7.99 -34.44 -0.28 -13.57 16 5 H 0.06 1.53 7.33 -52.49 -0.38 1.15 16 6 C 0.06 1.68 5.30 -17.82 -0.09 1.58 16 7 N -0.88 -24.02 11.31 55.43 0.63 -23.40 16 8 Si 0.90 20.00 29.54 -169.99 -5.02 14.98 16 9 H -0.27 -5.99 7.11 56.52 0.40 -5.58 16 10 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 11 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 12 N -0.98 -20.00 2.99 -115.84 -0.35 -20.35 16 13 C 0.11 1.87 9.19 59.85 0.55 2.42 16 14 S 2.61 48.61 5.37 -107.50 -0.58 48.03 16 15 O -0.98 -19.23 17.09 -57.54 -0.98 -20.21 16 16 O -0.96 -21.18 16.57 -57.54 -0.95 -22.13 16 17 C -0.63 -9.16 6.18 37.16 0.23 -8.93 16 18 C -0.11 -1.38 5.16 -26.73 -0.14 -1.52 16 19 C 0.06 0.75 4.96 -3.82 -0.02 0.73 16 20 N -0.54 -6.02 4.71 -234.46 -1.10 -7.12 16 21 C 0.05 0.51 5.41 -3.77 -0.02 0.49 16 22 C 0.06 0.52 5.62 -3.76 -0.02 0.49 16 23 N -0.55 -5.02 4.97 -242.75 -1.21 -6.22 16 24 C 0.03 0.18 9.60 60.06 0.58 0.76 16 25 C 0.06 0.50 5.62 -3.77 -0.02 0.48 16 26 C 0.06 0.54 5.61 -3.76 -0.02 0.52 16 27 H 0.09 2.39 6.06 -51.93 -0.31 2.08 16 28 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.03 0.72 7.67 -51.93 -0.40 0.32 16 30 H 0.26 6.81 8.31 -40.82 -0.34 6.47 16 31 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 32 H 0.05 0.73 7.79 -51.93 -0.40 0.33 16 33 H 0.08 1.40 7.02 -51.93 -0.36 1.04 16 34 H 0.14 2.05 8.14 -51.93 -0.42 1.63 16 35 H 0.12 1.56 8.14 -51.92 -0.42 1.14 16 36 H 0.07 0.88 6.49 -51.93 -0.34 0.54 16 37 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 38 H 0.08 0.93 8.03 -51.93 -0.42 0.52 16 39 H 0.04 0.44 8.12 -51.93 -0.42 0.02 16 40 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.09 0.86 6.34 -51.93 -0.33 0.53 16 42 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.08 0.63 8.13 -51.93 -0.42 0.21 16 44 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.07 0.43 8.13 -51.93 -0.42 0.01 16 46 H 0.03 0.19 8.14 -51.93 -0.42 -0.24 16 47 H 0.04 0.41 8.14 -51.92 -0.42 -0.01 16 48 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 49 H 0.08 0.73 8.07 -51.93 -0.42 0.31 16 50 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 LS Contribution 398.10 15.07 6.00 6.00 Total: -1.00 -31.05 398.10 -11.86 -42.91 By element: Atomic # 1 Polarization: 10.14 SS G_CDS: -9.20 Total: 0.94 kcal Atomic # 6 Polarization: -14.34 SS G_CDS: 0.90 Total: -13.44 kcal Atomic # 7 Polarization: -55.06 SS G_CDS: -2.03 Total: -57.09 kcal Atomic # 8 Polarization: -40.40 SS G_CDS: -1.94 Total: -42.34 kcal Atomic # 14 Polarization: 20.00 SS G_CDS: -5.02 Total: 14.98 kcal Atomic # 16 Polarization: 48.61 SS G_CDS: -0.58 Total: 48.03 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -31.05 -11.86 -42.91 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601337141.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.313 kcal (2) G-P(sol) polarization free energy of solvation -31.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds