Wall clock time and date at job start Tue Mar 31 2020 17:14:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 109.47427 * 2 1 4 4 C 1.50701 * 109.47419 * 120.00339 * 2 1 3 5 5 H 1.08002 * 119.99761 * 119.99343 * 4 2 1 6 6 C 1.37871 * 119.99694 * 300.27906 * 4 2 1 7 7 N 1.31514 * 120.00482 * 359.71466 * 6 4 2 8 8 Si 1.86801 * 119.99746 * 179.72062 * 6 4 2 9 9 H 1.48494 * 109.47230 * 359.97438 * 8 6 4 10 10 H 1.48505 * 109.47301 * 119.99669 * 8 6 4 11 11 H 1.48498 * 109.47430 * 239.99516 * 8 6 4 12 12 N 1.46499 * 109.47185 * 240.00729 * 2 1 3 13 13 C 1.46506 * 119.99453 * 300.00085 * 12 2 1 14 14 S 1.65591 * 120.00485 * 119.99872 * 12 2 1 15 15 O 1.42107 * 104.28088 * 206.06980 * 14 12 2 16 16 O 1.42103 * 104.27876 * 333.93112 * 14 12 2 17 17 C 1.81401 * 104.44895 * 90.00062 * 14 12 2 18 18 C 1.53002 * 109.46956 * 180.02562 * 17 14 12 19 19 C 1.53007 * 109.47084 * 179.97438 * 18 17 14 20 20 N 1.46899 * 109.47089 * 179.97438 * 19 18 17 21 21 C 1.46957 * 110.99892 * 293.79718 * 20 19 18 22 22 C 1.53053 * 109.36364 * 176.81287 * 21 20 19 23 23 N 1.46964 * 109.36309 * 58.40113 * 22 21 20 24 24 C 1.46899 * 110.99779 * 176.81255 * 23 22 21 25 25 C 1.46950 * 110.88157 * 300.68347 * 23 22 21 26 26 C 1.46962 * 110.99508 * 170.00351 * 20 19 18 27 27 H 1.09004 * 109.46783 * 299.99852 * 1 2 3 28 28 H 1.09005 * 109.46870 * 59.99511 * 1 2 3 29 29 H 1.08998 * 109.47156 * 179.97438 * 1 2 3 30 30 H 0.96995 * 120.00207 * 179.97438 * 7 6 4 31 31 H 1.09002 * 109.47497 * 90.00369 * 13 12 2 32 32 H 1.09004 * 109.46702 * 209.99812 * 13 12 2 33 33 H 1.08998 * 109.47259 * 329.99392 * 13 12 2 34 34 H 1.08998 * 109.47545 * 299.99847 * 17 14 12 35 35 H 1.09000 * 109.47119 * 60.00395 * 17 14 12 36 36 H 1.08998 * 109.47227 * 299.99580 * 18 17 14 37 37 H 1.08991 * 109.47186 * 60.00300 * 18 17 14 38 38 H 1.08995 * 109.47272 * 300.00234 * 19 18 17 39 39 H 1.09001 * 109.47134 * 59.99774 * 19 18 17 40 40 H 1.08999 * 109.49057 * 296.78108 * 21 20 19 41 41 H 1.08997 * 109.49062 * 56.84915 * 21 20 19 42 42 H 1.08997 * 109.48606 * 298.44074 * 22 21 20 43 43 H 1.08997 * 109.51244 * 178.38118 * 22 21 20 44 44 H 1.08996 * 109.46925 * 183.80374 * 24 23 22 45 45 H 1.08998 * 109.46871 * 303.79847 * 24 23 22 46 46 H 1.08997 * 109.47243 * 63.80186 * 24 23 22 47 47 H 1.09009 * 109.48682 * 299.35293 * 25 23 22 48 48 H 1.09004 * 109.50876 * 179.29767 * 25 23 22 49 49 H 1.09003 * 109.48854 * 303.14898 * 26 20 19 50 50 H 1.08998 * 109.49294 * 63.21993 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1312 6 6 1.6946 -0.2428 2.4826 7 7 0.9386 0.8265 2.6034 8 14 2.3109 -1.1280 4.0077 9 1 3.1365 -2.2943 3.6035 10 1 3.1332 -0.1974 4.8220 11 1 1.1526 -1.5965 4.8103 12 7 2.0183 -0.6904 -1.1962 13 6 1.6643 -2.0931 -1.4282 14 16 2.9703 0.1143 -2.2862 15 8 2.7432 -0.5610 -3.5158 16 8 2.6122 1.4798 -2.1233 17 6 4.6648 -0.1729 -1.7059 18 6 5.6504 0.5298 -2.6419 19 6 7.0796 0.2881 -2.1521 20 7 8.0259 0.9621 -3.0510 21 6 8.0096 0.3507 -4.3872 22 6 8.9471 1.1294 -5.3131 23 7 10.3046 1.1220 -4.7502 24 6 11.2509 1.7961 -5.6492 25 6 10.3209 1.7333 -3.4140 26 6 9.3834 0.9547 -2.4881 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 0.7006 1.1552 3.4844 31 1 0.7375 -2.1442 -1.9995 32 1 2.4628 -2.5817 -1.9866 33 1 1.5295 -2.5968 -0.4710 34 1 4.7758 0.2249 -0.6972 35 1 4.8700 -1.2434 -1.6990 36 1 5.5397 0.1324 -3.6508 37 1 5.4451 1.6002 -2.6484 38 1 7.1901 0.6857 -1.1433 39 1 7.2852 -0.7824 -2.1451 40 1 8.3443 -0.6843 -4.3177 41 1 6.9964 0.3794 -4.7880 42 1 8.5968 2.1575 -5.4042 43 1 8.9589 0.6607 -6.2971 44 1 12.2585 1.7174 -5.2412 45 1 11.2186 1.3238 -6.6310 46 1 10.9777 2.8471 -5.7424 47 1 9.9862 2.7684 -3.4836 48 1 11.3341 1.7050 -3.0130 49 1 9.3717 1.4238 -1.5043 50 1 9.7337 -0.0735 -2.3970 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601337141.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:14:32 Heat of formation + Delta-G solvation = -82.377032 kcal Electronic energy + Delta-G solvation = -27820.058644 eV Core-core repulsion = 24008.621298 eV Total energy + Delta-G solvation = -3811.437346 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.33817 -38.15941 -37.85162 -37.22416 -36.89437 -34.49058 -34.29419 -31.93196 -30.90577 -29.72822 -27.27908 -27.01025 -26.56325 -24.84372 -24.21350 -22.66178 -22.11690 -20.78276 -19.69431 -18.55896 -18.23850 -17.72432 -17.28144 -16.84677 -16.71694 -16.29969 -16.02403 -15.84216 -15.71327 -15.26758 -15.15544 -14.95396 -14.79155 -14.40724 -13.71647 -13.60496 -13.55938 -13.39316 -13.36336 -13.17636 -13.12335 -13.08088 -12.94503 -12.83305 -12.70523 -12.65280 -12.56684 -12.25863 -12.14165 -12.12620 -12.08128 -11.91585 -11.80975 -11.64358 -11.41362 -11.04258 -10.48869 -9.56420 -9.46311 -9.28327 -8.07491 -6.23149 -0.59612 1.46163 1.49224 1.58886 1.84905 2.46485 2.74104 2.96359 3.02472 3.21014 3.27486 3.71475 3.77316 3.88873 3.92212 4.06900 4.14888 4.21258 4.28547 4.38325 4.40030 4.49044 4.58623 4.61617 4.65348 4.71613 4.76200 4.82259 4.83483 4.88283 4.90980 4.98703 4.99399 5.00429 5.00589 5.04591 5.08687 5.18779 5.29968 5.62957 5.72604 5.87983 5.90813 5.93976 6.11407 6.11482 6.13399 6.30870 6.87850 7.47252 8.97292 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.015815 B = 0.002793 C = 0.002507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1770.022677 B =10022.984415 C =11165.009599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.269 3.731 3 H 0.029 0.971 4 C -0.531 4.531 5 H 0.075 0.925 6 C 0.015 3.985 7 N -0.919 5.919 8 Si 0.959 3.041 9 H -0.260 1.260 10 H -0.285 1.285 11 H -0.286 1.286 12 N -0.995 5.995 13 C 0.099 3.901 14 S 2.605 3.395 15 O -0.989 6.989 16 O -1.001 7.001 17 C -0.605 4.605 18 C -0.110 4.110 19 C 0.069 3.931 20 N -0.554 5.554 21 C 0.048 3.952 22 C 0.057 3.943 23 N -0.558 5.558 24 C 0.026 3.974 25 C 0.058 3.942 26 C 0.056 3.944 27 H 0.069 0.931 28 H 0.015 0.985 29 H 0.042 0.958 30 H 0.263 0.737 31 H 0.045 0.955 32 H 0.081 0.919 33 H 0.077 0.923 34 H 0.141 0.859 35 H 0.155 0.845 36 H 0.083 0.917 37 H 0.076 0.924 38 H 0.084 0.916 39 H 0.050 0.950 40 H 0.043 0.957 41 H 0.084 0.916 42 H 0.035 0.965 43 H 0.092 0.908 44 H 0.077 0.923 45 H 0.075 0.925 46 H 0.025 0.975 47 H 0.035 0.965 48 H 0.094 0.906 49 H 0.088 0.912 50 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.633 -2.901 -11.806 22.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.165 3.835 3 H 0.047 0.953 4 C -0.570 4.570 5 H 0.093 0.907 6 C -0.185 4.185 7 N -0.558 5.558 8 Si 0.785 3.215 9 H -0.184 1.184 10 H -0.211 1.211 11 H -0.212 1.212 12 N -0.833 5.833 13 C -0.047 4.047 14 S 2.704 3.296 15 O -0.980 6.980 16 O -0.992 6.992 17 C -0.738 4.738 18 C -0.150 4.150 19 C -0.060 4.060 20 N -0.280 5.280 21 C -0.080 4.080 22 C -0.071 4.071 23 N -0.283 5.283 24 C -0.122 4.122 25 C -0.070 4.070 26 C -0.072 4.072 27 H 0.088 0.912 28 H 0.034 0.966 29 H 0.061 0.939 30 H 0.072 0.928 31 H 0.064 0.936 32 H 0.099 0.901 33 H 0.095 0.905 34 H 0.159 0.841 35 H 0.173 0.827 36 H 0.101 0.899 37 H 0.095 0.905 38 H 0.103 0.897 39 H 0.068 0.932 40 H 0.061 0.939 41 H 0.102 0.898 42 H 0.053 0.947 43 H 0.110 0.890 44 H 0.096 0.904 45 H 0.094 0.906 46 H 0.044 0.956 47 H 0.053 0.947 48 H 0.112 0.888 49 H 0.106 0.894 50 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 18.204 -2.316 -12.437 22.168 hybrid contribution 0.131 -0.291 1.465 1.500 sum 18.334 -2.607 -10.972 21.525 Atomic orbital electron populations 1.21936 0.98305 0.99858 0.99732 1.18425 0.91853 0.91733 0.81486 0.95331 1.21726 1.31559 1.13248 0.90505 0.90702 1.25721 0.95196 0.95613 1.01961 1.70034 1.37406 1.24139 1.24248 0.85492 0.77984 0.78728 0.79289 1.18406 1.21120 1.21191 1.57301 1.64989 1.22385 1.38629 1.21394 1.00577 0.80579 1.02137 1.04803 0.78075 0.73169 0.73578 1.93495 1.85473 1.75528 1.43494 1.93518 1.82741 1.36260 1.86651 1.30414 1.19653 1.12201 1.11533 1.21363 0.94499 1.01012 0.98117 1.21990 0.89781 0.97482 0.96760 1.62132 1.07444 1.55202 1.03194 1.22305 1.00059 0.96542 0.89137 1.22181 0.87718 0.99173 0.98018 1.62206 1.07471 1.55126 1.03459 1.22386 0.96354 0.96350 0.97139 1.22184 0.99931 0.95906 0.88980 1.22204 0.87113 0.99663 0.98201 0.91220 0.96618 0.93924 0.92781 0.93627 0.90083 0.90456 0.84082 0.82663 0.89873 0.90515 0.89721 0.93216 0.93884 0.89752 0.94698 0.88987 0.90420 0.90584 0.95649 0.94716 0.88821 0.89389 0.94035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.76 8.97 71.98 0.65 -6.12 16 2 C 0.27 13.10 2.57 44.24 0.11 13.22 16 3 H 0.03 1.58 6.87 -2.38 -0.02 1.56 16 4 C -0.53 -26.26 7.99 25.60 0.20 -26.06 16 5 H 0.07 3.46 7.33 -2.91 -0.02 3.44 16 6 C 0.01 0.76 5.30 84.65 0.45 1.20 16 7 N -0.92 -50.72 11.31 21.45 0.24 -50.48 16 8 Si 0.96 40.45 29.54 68.60 2.03 42.48 16 9 H -0.26 -10.32 7.11 99.48 0.71 -9.61 16 10 H -0.29 -12.02 7.11 99.48 0.71 -11.31 16 11 H -0.29 -12.08 7.11 99.48 0.71 -11.38 16 12 N -0.99 -39.79 2.99 -520.42 -1.56 -41.35 16 13 C 0.10 3.29 9.19 127.77 1.17 4.46 16 14 S 2.61 95.83 5.37 -56.49 -0.30 95.52 16 15 O -0.99 -37.91 17.09 -127.65 -2.18 -40.09 16 16 O -1.00 -45.51 16.57 -127.65 -2.12 -47.63 16 17 C -0.61 -16.16 6.18 71.98 0.44 -15.72 16 18 C -0.11 -2.67 5.16 30.60 0.16 -2.51 16 19 C 0.07 1.43 4.96 86.31 0.43 1.85 16 20 N -0.55 -11.36 4.71 -895.69 -4.22 -15.58 16 21 C 0.05 0.90 5.41 86.31 0.47 1.36 16 22 C 0.06 0.97 5.62 86.31 0.49 1.46 16 23 N -0.56 -9.21 4.97 -921.93 -4.58 -13.79 16 24 C 0.03 0.31 9.60 127.69 1.23 1.54 16 25 C 0.06 0.93 5.62 86.31 0.49 1.42 16 26 C 0.06 0.98 5.61 86.31 0.48 1.47 16 27 H 0.07 3.72 6.06 -2.38 -0.01 3.70 16 28 H 0.01 0.70 8.14 -2.38 -0.02 0.68 16 29 H 0.04 1.92 7.67 -2.39 -0.02 1.90 16 30 H 0.26 13.82 8.31 -92.71 -0.77 13.05 16 31 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.08 2.16 7.79 -2.39 -0.02 2.14 16 33 H 0.08 2.60 7.02 -2.39 -0.02 2.58 16 34 H 0.14 3.88 8.14 -2.39 -0.02 3.86 16 35 H 0.16 3.27 8.14 -2.39 -0.02 3.25 16 36 H 0.08 1.85 6.49 -2.39 -0.02 1.83 16 37 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 38 H 0.08 1.72 8.03 -2.39 -0.02 1.70 16 39 H 0.05 0.94 8.12 -2.39 -0.02 0.92 16 40 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 41 H 0.08 1.57 6.34 -2.39 -0.02 1.55 16 42 H 0.03 0.65 8.14 -2.39 -0.02 0.63 16 43 H 0.09 1.30 8.13 -2.39 -0.02 1.28 16 44 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 45 H 0.08 0.81 8.13 -2.39 -0.02 0.79 16 46 H 0.02 0.32 8.14 -2.39 -0.02 0.30 16 47 H 0.03 0.62 8.14 -2.38 -0.02 0.60 16 48 H 0.09 1.20 8.14 -2.38 -0.02 1.18 16 49 H 0.09 1.40 8.07 -2.39 -0.02 1.38 16 50 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 Total: -1.00 -66.51 398.10 -5.04 -71.54 By element: Atomic # 1 Polarization: 20.91 SS G_CDS: 0.88 Total: 21.79 kcal Atomic # 6 Polarization: -29.18 SS G_CDS: 6.76 Total: -22.42 kcal Atomic # 7 Polarization: -111.09 SS G_CDS: -10.11 Total: -121.20 kcal Atomic # 8 Polarization: -83.42 SS G_CDS: -4.30 Total: -87.72 kcal Atomic # 14 Polarization: 40.45 SS G_CDS: 2.03 Total: 42.48 kcal Atomic # 16 Polarization: 95.83 SS G_CDS: -0.30 Total: 95.52 kcal Total: -66.51 -5.04 -71.54 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601337141.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.833 kcal (2) G-P(sol) polarization free energy of solvation -66.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds