Wall clock time and date at job start Tue Mar 31 2020 17:54:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46897 * 110.99683 * 2 1 4 4 C 1.46895 * 110.99970 * 123.95060 * 2 1 3 5 5 C 1.53008 * 109.46972 * 170.00151 * 4 2 1 6 6 C 1.52997 * 109.47032 * 180.02562 * 5 4 2 7 7 S 1.81398 * 109.47007 * 179.97438 * 6 5 4 8 8 O 1.42105 * 110.54110 * 68.37568 * 7 6 5 9 9 O 1.42097 * 110.54639 * 291.62214 * 7 6 5 10 10 N 1.65603 * 104.44789 * 179.97438 * 7 6 5 11 11 C 1.46494 * 120.00025 * 65.00346 * 10 7 6 12 12 C 1.52996 * 109.47280 * 164.99695 * 11 10 7 13 13 C 1.53349 * 109.42091 * 295.12817 * 12 11 10 14 14 C 1.53196 * 109.15353 * 178.67328 * 13 12 11 15 15 N 1.46928 * 108.89135 * 54.57497 * 14 13 12 16 16 C 1.36936 * 120.63013 * 126.29699 * 15 14 13 17 17 H 1.07999 * 120.00022 * 331.83633 * 16 15 14 18 18 C 1.38813 * 120.00005 * 151.82709 * 16 15 14 19 19 N 1.31618 * 120.00004 * 343.09585 * 18 16 15 20 20 Si 1.86806 * 119.99953 * 163.09475 * 18 16 15 21 21 H 1.48494 * 109.47083 * 60.00061 * 20 18 16 22 22 H 1.48500 * 109.46851 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.47024 * 300.00112 * 20 18 16 24 24 C 1.46924 * 118.73859 * 306.32337 * 15 14 13 25 25 C 1.53044 * 109.46279 * 174.99967 * 12 11 10 26 26 H 1.08997 * 109.47498 * 296.04134 * 1 2 3 27 27 H 1.09001 * 109.47349 * 56.04930 * 1 2 3 28 28 H 1.09000 * 109.47394 * 176.04436 * 1 2 3 29 29 H 1.09001 * 109.47407 * 183.95052 * 3 2 1 30 30 H 1.08999 * 109.47382 * 303.95377 * 3 2 1 31 31 H 1.08997 * 109.47188 * 63.95707 * 3 2 1 32 32 H 1.09008 * 109.47084 * 50.00670 * 4 2 1 33 33 H 1.08993 * 109.47604 * 290.00117 * 4 2 1 34 34 H 1.08995 * 109.46954 * 60.00130 * 5 4 2 35 35 H 1.09002 * 109.46670 * 300.00388 * 5 4 2 36 36 H 1.09000 * 109.47151 * 60.00242 * 6 5 4 37 37 H 1.08998 * 109.46957 * 300.00167 * 6 5 4 38 38 H 0.97004 * 119.99617 * 244.99660 * 10 7 6 39 39 H 1.08996 * 109.47191 * 44.99663 * 11 10 7 40 40 H 1.08998 * 109.47122 * 284.99967 * 11 10 7 41 41 H 1.09003 * 109.46065 * 55.02896 * 12 11 10 42 42 H 1.08998 * 109.68701 * 58.70817 * 13 12 11 43 43 H 1.09000 * 109.47234 * 298.50885 * 13 12 11 44 44 H 1.08996 * 109.58345 * 294.72319 * 14 13 12 45 45 H 1.08994 * 109.58644 * 174.43734 * 14 13 12 46 46 H 0.96996 * 119.99787 * 179.97438 * 19 18 16 47 47 H 1.09000 * 109.58664 * 173.39523 * 24 15 14 48 48 H 1.08996 * 109.58580 * 293.67452 * 24 15 14 49 49 H 1.08992 * 109.49619 * 61.43154 * 25 12 11 50 50 H 1.08999 * 109.52313 * 301.35168 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3714 0.0000 4 6 1.9954 -0.7659 1.1376 5 6 3.5045 -0.9552 0.9703 6 6 4.0527 -1.7535 2.1549 7 16 5.8416 -1.9786 1.9562 8 8 6.5190 -0.7373 2.0967 9 8 6.1171 -2.8439 0.8632 10 7 6.2996 -2.8463 3.2902 11 6 5.8075 -4.2131 3.4794 12 6 6.6461 -4.9136 4.5503 13 6 8.0884 -5.0635 4.0512 14 6 8.9300 -5.7353 5.1408 15 7 8.2884 -6.9998 5.5256 16 6 8.9921 -8.1743 5.5033 17 1 9.8165 -8.2969 4.8166 18 6 8.6459 -9.2073 6.3636 19 7 7.8856 -8.9651 7.4103 20 14 9.2590 -10.9411 6.0356 21 1 10.7439 -10.9507 6.0428 22 1 8.7524 -11.8534 7.0921 23 1 8.7675 -11.3976 4.7107 24 6 6.8772 -6.9803 5.9341 25 6 6.0557 -6.2961 4.8370 26 1 -0.3634 0.4511 0.9233 27 1 -0.3634 0.5739 -0.8525 28 1 -0.3634 -1.0252 -0.0709 29 1 3.0827 1.3433 -0.0708 30 1 1.5897 1.9163 -0.8524 31 1 1.7043 1.8723 0.9233 32 1 1.5090 -1.7407 1.1756 33 1 1.7975 -0.2247 2.0628 34 1 3.9909 0.0194 0.9323 35 1 3.7023 -1.4964 0.0451 36 1 3.5662 -2.7282 2.1925 37 1 3.8547 -1.2126 3.0802 38 1 6.8937 -2.4496 3.9464 39 1 5.8863 -4.7609 2.5403 40 1 4.7650 -4.1834 3.7961 41 1 6.6387 -4.3190 5.4638 42 1 8.5028 -4.0809 3.8255 43 1 8.0995 -5.6789 3.1517 44 1 8.9947 -5.0794 6.0089 45 1 9.9309 -5.9349 4.7583 46 1 7.6434 -9.6870 8.0112 47 1 6.5228 -8.0017 6.0727 48 1 6.7749 -6.4281 6.8683 49 1 6.0857 -6.8997 3.9300 50 1 5.0229 -6.1894 5.1689 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601370303.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:54:16 Heat of formation + Delta-G solvation = -59.658192 kcal Electronic energy + Delta-G solvation = -27140.622634 eV Core-core repulsion = 23330.170451 eV Total energy + Delta-G solvation = -3810.452183 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -38.26829 -38.15255 -37.18512 -36.05894 -35.27305 -33.97266 -32.66978 -30.64456 -29.62599 -28.09271 -27.72295 -26.51371 -23.89759 -23.57199 -22.13014 -21.41308 -21.15235 -19.58619 -19.00984 -17.67125 -16.86584 -16.64516 -16.62255 -16.02485 -15.56036 -15.20910 -15.10242 -14.77050 -14.55262 -14.31124 -13.89407 -13.49496 -13.18269 -13.10811 -12.92588 -12.80895 -12.71496 -12.39281 -12.38297 -12.23208 -12.13738 -12.11035 -12.06171 -12.01130 -11.80077 -11.33938 -11.24367 -10.97124 -10.83813 -10.69806 -10.50298 -10.22493 -10.21885 -9.88162 -9.65118 -9.45148 -9.33458 -8.87115 -8.45243 -6.64887 -5.77741 -3.19685 0.09730 2.61690 3.36284 3.39697 3.44987 3.46949 3.67490 3.97995 4.29480 4.37267 4.50665 4.51313 4.70429 4.81382 4.89995 4.93295 5.03217 5.08274 5.14129 5.15166 5.22967 5.34525 5.40653 5.41624 5.43628 5.47178 5.50799 5.58436 5.65352 5.83038 5.90601 6.07916 6.19784 6.34276 6.50116 6.50679 6.53461 6.59954 6.68795 6.78130 6.85081 6.91967 7.03314 7.37335 7.65849 7.81113 8.47139 9.23400 9.86923 10.43759 11.30855 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.025375 B = 0.002102 C = 0.002018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.204191 B =13316.210121 C =13869.572896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.550 5.550 3 C 0.016 3.984 4 C 0.062 3.938 5 C -0.110 4.110 6 C -0.633 4.633 7 S 2.614 3.386 8 O -0.963 6.963 9 O -0.952 6.952 10 N -1.115 6.115 11 C 0.116 3.884 12 C -0.083 4.083 13 C -0.129 4.129 14 C 0.144 3.856 15 N -0.592 5.592 16 C -0.251 4.251 17 H 0.064 0.936 18 C 0.001 3.999 19 N -0.905 5.905 20 Si 0.903 3.097 21 H -0.283 1.283 22 H -0.291 1.291 23 H -0.284 1.284 24 C 0.171 3.829 25 C -0.135 4.135 26 H 0.026 0.974 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.073 0.927 30 H 0.070 0.930 31 H 0.027 0.973 32 H 0.081 0.919 33 H 0.039 0.961 34 H 0.078 0.922 35 H 0.089 0.911 36 H 0.134 0.866 37 H 0.132 0.868 38 H 0.418 0.582 39 H 0.079 0.921 40 H 0.059 0.941 41 H 0.070 0.930 42 H 0.051 0.949 43 H 0.061 0.939 44 H 0.016 0.984 45 H 0.052 0.948 46 H 0.254 0.746 47 H 0.087 0.913 48 H 0.017 0.983 49 H 0.058 0.942 50 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.688 18.922 -10.896 26.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.274 5.274 3 C -0.132 4.132 4 C -0.067 4.067 5 C -0.149 4.149 6 C -0.762 4.762 7 S 2.706 3.294 8 O -0.953 6.953 9 O -0.942 6.942 10 N -0.875 5.875 11 C -0.010 4.010 12 C -0.103 4.103 13 C -0.168 4.168 14 C 0.018 3.982 15 N -0.315 5.315 16 C -0.380 4.380 17 H 0.082 0.918 18 C -0.197 4.197 19 N -0.549 5.549 20 Si 0.732 3.268 21 H -0.209 1.209 22 H -0.217 1.217 23 H -0.210 1.210 24 C 0.045 3.955 25 C -0.176 4.176 26 H 0.044 0.956 27 H 0.088 0.912 28 H 0.089 0.911 29 H 0.092 0.908 30 H 0.089 0.911 31 H 0.046 0.954 32 H 0.099 0.901 33 H 0.057 0.943 34 H 0.097 0.903 35 H 0.107 0.893 36 H 0.152 0.848 37 H 0.150 0.850 38 H 0.253 0.747 39 H 0.097 0.903 40 H 0.077 0.923 41 H 0.088 0.912 42 H 0.070 0.930 43 H 0.079 0.921 44 H 0.034 0.966 45 H 0.071 0.929 46 H 0.064 0.936 47 H 0.105 0.895 48 H 0.035 0.965 49 H 0.077 0.923 50 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -14.130 18.766 -12.015 26.386 hybrid contribution -0.458 -0.451 1.446 1.582 sum -14.589 18.316 -10.569 25.690 Atomic orbital electron populations 1.22391 0.86913 1.02519 1.00617 1.61965 1.08169 1.14178 1.43074 1.22506 1.01366 0.88619 1.00714 1.22098 0.94280 0.98827 0.91513 1.21306 0.96915 1.00341 0.96327 1.30641 1.27708 1.10145 1.07689 1.04850 0.77006 0.73706 0.73876 1.93597 1.71044 1.44741 1.85896 1.93618 1.82655 1.65925 1.51953 1.55516 1.62890 1.24950 1.44172 1.21567 0.97287 0.80758 1.01356 1.21293 0.95440 0.96986 0.96568 1.22123 0.94905 0.99581 1.00175 1.20906 0.94937 0.88361 0.94018 1.44040 1.06822 1.02333 1.78323 1.19154 1.13812 0.90784 1.14291 0.91789 1.25041 1.00374 0.99268 0.95059 1.70019 1.40666 1.31177 1.13057 0.86367 0.78518 0.84552 0.77324 1.20911 1.21686 1.21031 1.20754 0.82986 1.00413 0.91319 1.22220 0.98526 0.94811 1.01997 0.95577 0.91162 0.91143 0.90842 0.91147 0.95419 0.90096 0.94256 0.90334 0.89254 0.84755 0.84958 0.74681 0.90302 0.92282 0.91208 0.93034 0.92066 0.96640 0.92899 0.93643 0.89459 0.96483 0.92305 0.93156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 9.57 60.06 0.57 0.71 16 2 N -0.55 -4.06 5.02 -251.26 -1.26 -5.33 16 3 C 0.02 0.10 9.32 60.06 0.56 0.66 16 4 C 0.06 0.43 4.96 -3.82 -0.02 0.41 16 5 C -0.11 -0.82 5.15 -26.73 -0.14 -0.96 16 6 C -0.63 -4.32 6.07 37.16 0.23 -4.10 16 7 S 2.61 27.47 5.46 -107.50 -0.59 26.88 16 8 O -0.96 -12.82 18.08 -57.54 -1.04 -13.86 16 9 O -0.95 -13.58 17.50 -57.54 -1.01 -14.58 16 10 N -1.11 -11.62 5.40 -10.62 -0.06 -11.68 16 11 C 0.12 1.35 5.52 -4.05 -0.02 1.33 16 12 C -0.08 -1.24 2.18 -90.42 -0.20 -1.44 16 13 C -0.13 -2.18 5.28 -26.45 -0.14 -2.32 16 14 C 0.14 2.99 6.51 -3.71 -0.02 2.97 16 15 N -0.59 -14.65 2.99 -172.32 -0.52 -15.17 16 16 C -0.25 -6.87 9.58 -15.06 -0.14 -7.01 16 17 H 0.06 1.73 7.88 -52.49 -0.41 1.32 16 18 C 0.00 0.03 4.92 -17.43 -0.09 -0.06 16 19 N -0.90 -26.03 11.20 55.49 0.62 -25.41 16 20 Si 0.90 21.68 29.59 -169.99 -5.03 16.65 16 21 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 22 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 23 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 24 C 0.17 3.94 5.30 -3.71 -0.02 3.92 16 25 C -0.14 -2.37 5.36 -26.61 -0.14 -2.51 16 26 H 0.03 0.14 8.14 -51.93 -0.42 -0.28 16 27 H 0.07 0.35 8.12 -51.93 -0.42 -0.07 16 28 H 0.07 0.38 8.12 -51.93 -0.42 -0.04 16 29 H 0.07 0.46 6.47 -51.93 -0.34 0.12 16 30 H 0.07 0.38 8.12 -51.93 -0.42 -0.04 16 31 H 0.03 0.16 8.14 -51.93 -0.42 -0.26 16 32 H 0.08 0.51 8.06 -51.92 -0.42 0.10 16 33 H 0.04 0.25 8.12 -51.93 -0.42 -0.17 16 34 H 0.08 0.56 6.55 -51.93 -0.34 0.22 16 35 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 36 H 0.13 0.73 8.14 -51.92 -0.42 0.31 16 37 H 0.13 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.42 4.07 8.34 -34.47 -0.29 3.78 16 39 H 0.08 0.98 7.70 -51.93 -0.40 0.58 16 40 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 42 H 0.05 0.76 7.52 -51.93 -0.39 0.37 16 43 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 44 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 45 H 0.05 1.10 7.93 -51.93 -0.41 0.68 16 46 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 47 H 0.09 2.27 6.06 -51.93 -0.31 1.95 16 48 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 49 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 50 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 LS Contribution 401.28 15.07 6.05 6.05 Total: -1.00 -34.45 401.28 -11.61 -46.05 By element: Atomic # 1 Polarization: 8.00 SS G_CDS: -9.21 Total: -1.21 kcal Atomic # 6 Polarization: -8.83 SS G_CDS: 0.43 Total: -8.40 kcal Atomic # 7 Polarization: -56.37 SS G_CDS: -1.21 Total: -57.58 kcal Atomic # 8 Polarization: -26.39 SS G_CDS: -2.05 Total: -28.44 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.03 Total: 16.65 kcal Atomic # 16 Polarization: 27.47 SS G_CDS: -0.59 Total: 26.88 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -34.45 -11.61 -46.05 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601370303.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.605 kcal (2) G-P(sol) polarization free energy of solvation -34.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds