Wall clock time and date at job start Tue Mar 31 2020 17:54:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46897 * 110.99683 * 2 1 4 4 C 1.46895 * 110.99970 * 123.95060 * 2 1 3 5 5 C 1.53008 * 109.46972 * 170.00151 * 4 2 1 6 6 C 1.52997 * 109.47032 * 180.02562 * 5 4 2 7 7 S 1.81398 * 109.47007 * 179.97438 * 6 5 4 8 8 O 1.42105 * 110.54110 * 68.37568 * 7 6 5 9 9 O 1.42097 * 110.54639 * 291.62214 * 7 6 5 10 10 N 1.65603 * 104.44789 * 179.97438 * 7 6 5 11 11 C 1.46494 * 120.00025 * 65.00346 * 10 7 6 12 12 C 1.52996 * 109.47280 * 164.99695 * 11 10 7 13 13 C 1.53349 * 109.42091 * 295.12817 * 12 11 10 14 14 C 1.53196 * 109.15353 * 178.67328 * 13 12 11 15 15 N 1.46928 * 108.89135 * 54.57497 * 14 13 12 16 16 C 1.36936 * 120.63013 * 126.29699 * 15 14 13 17 17 H 1.07999 * 120.00022 * 331.83633 * 16 15 14 18 18 C 1.38813 * 120.00005 * 151.82709 * 16 15 14 19 19 N 1.31618 * 120.00004 * 343.09585 * 18 16 15 20 20 Si 1.86806 * 119.99953 * 163.09475 * 18 16 15 21 21 H 1.48494 * 109.47083 * 60.00061 * 20 18 16 22 22 H 1.48500 * 109.46851 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.47024 * 300.00112 * 20 18 16 24 24 C 1.46924 * 118.73859 * 306.32337 * 15 14 13 25 25 C 1.53044 * 109.46279 * 174.99967 * 12 11 10 26 26 H 1.08997 * 109.47498 * 296.04134 * 1 2 3 27 27 H 1.09001 * 109.47349 * 56.04930 * 1 2 3 28 28 H 1.09000 * 109.47394 * 176.04436 * 1 2 3 29 29 H 1.09001 * 109.47407 * 183.95052 * 3 2 1 30 30 H 1.08999 * 109.47382 * 303.95377 * 3 2 1 31 31 H 1.08997 * 109.47188 * 63.95707 * 3 2 1 32 32 H 1.09008 * 109.47084 * 50.00670 * 4 2 1 33 33 H 1.08993 * 109.47604 * 290.00117 * 4 2 1 34 34 H 1.08995 * 109.46954 * 60.00130 * 5 4 2 35 35 H 1.09002 * 109.46670 * 300.00388 * 5 4 2 36 36 H 1.09000 * 109.47151 * 60.00242 * 6 5 4 37 37 H 1.08998 * 109.46957 * 300.00167 * 6 5 4 38 38 H 0.97004 * 119.99617 * 244.99660 * 10 7 6 39 39 H 1.08996 * 109.47191 * 44.99663 * 11 10 7 40 40 H 1.08998 * 109.47122 * 284.99967 * 11 10 7 41 41 H 1.09003 * 109.46065 * 55.02896 * 12 11 10 42 42 H 1.08998 * 109.68701 * 58.70817 * 13 12 11 43 43 H 1.09000 * 109.47234 * 298.50885 * 13 12 11 44 44 H 1.08996 * 109.58345 * 294.72319 * 14 13 12 45 45 H 1.08994 * 109.58644 * 174.43734 * 14 13 12 46 46 H 0.96996 * 119.99787 * 179.97438 * 19 18 16 47 47 H 1.09000 * 109.58664 * 173.39523 * 24 15 14 48 48 H 1.08996 * 109.58580 * 293.67452 * 24 15 14 49 49 H 1.08992 * 109.49619 * 61.43154 * 25 12 11 50 50 H 1.08999 * 109.52313 * 301.35168 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3714 0.0000 4 6 1.9954 -0.7659 1.1376 5 6 3.5045 -0.9552 0.9703 6 6 4.0527 -1.7535 2.1549 7 16 5.8416 -1.9786 1.9562 8 8 6.5190 -0.7373 2.0967 9 8 6.1171 -2.8439 0.8632 10 7 6.2996 -2.8463 3.2902 11 6 5.8075 -4.2131 3.4794 12 6 6.6461 -4.9136 4.5503 13 6 8.0884 -5.0635 4.0512 14 6 8.9300 -5.7353 5.1408 15 7 8.2884 -6.9998 5.5256 16 6 8.9921 -8.1743 5.5033 17 1 9.8165 -8.2969 4.8166 18 6 8.6459 -9.2073 6.3636 19 7 7.8856 -8.9651 7.4103 20 14 9.2590 -10.9411 6.0356 21 1 10.7439 -10.9507 6.0428 22 1 8.7524 -11.8534 7.0921 23 1 8.7675 -11.3976 4.7107 24 6 6.8772 -6.9803 5.9341 25 6 6.0557 -6.2961 4.8370 26 1 -0.3634 0.4511 0.9233 27 1 -0.3634 0.5739 -0.8525 28 1 -0.3634 -1.0252 -0.0709 29 1 3.0827 1.3433 -0.0708 30 1 1.5897 1.9163 -0.8524 31 1 1.7043 1.8723 0.9233 32 1 1.5090 -1.7407 1.1756 33 1 1.7975 -0.2247 2.0628 34 1 3.9909 0.0194 0.9323 35 1 3.7023 -1.4964 0.0451 36 1 3.5662 -2.7282 2.1925 37 1 3.8547 -1.2126 3.0802 38 1 6.8937 -2.4496 3.9464 39 1 5.8863 -4.7609 2.5403 40 1 4.7650 -4.1834 3.7961 41 1 6.6387 -4.3190 5.4638 42 1 8.5028 -4.0809 3.8255 43 1 8.0995 -5.6789 3.1517 44 1 8.9947 -5.0794 6.0089 45 1 9.9309 -5.9349 4.7583 46 1 7.6434 -9.6870 8.0112 47 1 6.5228 -8.0017 6.0727 48 1 6.7749 -6.4281 6.8683 49 1 6.0857 -6.8997 3.9300 50 1 5.0229 -6.1894 5.1689 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601370303.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:54:16 Heat of formation + Delta-G solvation = -85.851485 kcal Electronic energy + Delta-G solvation = -27141.758460 eV Core-core repulsion = 23330.170451 eV Total energy + Delta-G solvation = -3811.588009 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -39.57388 -38.74895 -38.13122 -36.99900 -36.61332 -34.51743 -34.30905 -32.29881 -31.28846 -28.52914 -28.23863 -28.05131 -25.52819 -24.12164 -23.69165 -22.64751 -21.91369 -20.81014 -20.14552 -18.82829 -18.28356 -17.63145 -17.35238 -16.85541 -16.60734 -16.13488 -15.81741 -15.78413 -15.60776 -15.42808 -15.27273 -15.07972 -14.78230 -14.21607 -13.84644 -13.67253 -13.53375 -13.36698 -13.25357 -13.16079 -13.11304 -13.05380 -12.97281 -12.89920 -12.71579 -12.58909 -12.52606 -12.48057 -12.27228 -11.98022 -11.80159 -11.75973 -11.59978 -11.43404 -11.10659 -11.08000 -10.50997 -10.25585 -9.33943 -8.64313 -7.86096 -5.30797 -0.68801 1.46869 1.48925 1.55825 1.81476 2.52233 2.77898 3.03716 3.27529 3.29020 3.72936 3.74896 3.79959 3.89173 3.97896 4.02008 4.12799 4.26524 4.33448 4.47316 4.50754 4.55540 4.58635 4.63009 4.66634 4.68758 4.73353 4.78041 4.82131 4.94967 4.96118 5.00248 5.01296 5.03355 5.08809 5.11716 5.28519 5.35798 5.37644 5.47186 5.58320 5.68979 5.85110 6.04408 6.06193 6.13750 6.41648 7.17915 7.90246 8.40615 9.19539 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.025375 B = 0.002102 C = 0.002018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.204191 B =13316.210121 C =13869.572896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.568 5.568 3 C 0.014 3.986 4 C 0.062 3.938 5 C -0.118 4.118 6 C -0.605 4.605 7 S 2.619 3.381 8 O -0.996 6.996 9 O -0.996 6.996 10 N -1.114 6.114 11 C 0.122 3.878 12 C -0.078 4.078 13 C -0.120 4.120 14 C 0.139 3.861 15 N -0.612 5.612 16 C -0.264 4.264 17 H 0.060 0.940 18 C -0.050 4.050 19 N -0.933 5.933 20 Si 0.965 3.035 21 H -0.278 1.278 22 H -0.292 1.292 23 H -0.279 1.279 24 C 0.174 3.826 25 C -0.124 4.124 26 H 0.030 0.970 27 H 0.074 0.926 28 H 0.073 0.927 29 H 0.069 0.931 30 H 0.075 0.925 31 H 0.031 0.969 32 H 0.088 0.912 33 H 0.048 0.952 34 H 0.078 0.922 35 H 0.081 0.919 36 H 0.159 0.841 37 H 0.161 0.839 38 H 0.422 0.578 39 H 0.071 0.929 40 H 0.099 0.901 41 H 0.078 0.922 42 H 0.075 0.925 43 H 0.048 0.952 44 H 0.016 0.984 45 H 0.044 0.956 46 H 0.250 0.750 47 H 0.051 0.949 48 H -0.002 1.002 49 H 0.051 0.949 50 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.600 20.004 -11.417 28.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.292 5.292 3 C -0.134 4.134 4 C -0.067 4.067 5 C -0.158 4.158 6 C -0.739 4.739 7 S 2.716 3.284 8 O -0.986 6.986 9 O -0.986 6.986 10 N -0.874 5.874 11 C -0.004 4.004 12 C -0.098 4.098 13 C -0.159 4.159 14 C 0.013 3.987 15 N -0.336 5.336 16 C -0.394 4.394 17 H 0.078 0.922 18 C -0.246 4.246 19 N -0.579 5.579 20 Si 0.793 3.207 21 H -0.204 1.204 22 H -0.218 1.218 23 H -0.205 1.205 24 C 0.048 3.952 25 C -0.163 4.163 26 H 0.048 0.952 27 H 0.093 0.907 28 H 0.092 0.908 29 H 0.088 0.912 30 H 0.094 0.906 31 H 0.050 0.950 32 H 0.107 0.893 33 H 0.066 0.934 34 H 0.096 0.904 35 H 0.099 0.901 36 H 0.177 0.823 37 H 0.179 0.821 38 H 0.258 0.742 39 H 0.089 0.911 40 H 0.117 0.883 41 H 0.097 0.903 42 H 0.093 0.907 43 H 0.066 0.934 44 H 0.033 0.967 45 H 0.062 0.938 46 H 0.059 0.941 47 H 0.070 0.930 48 H 0.016 0.984 49 H 0.069 0.931 50 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -15.989 19.866 -12.557 28.425 hybrid contribution 0.127 -0.720 1.610 1.768 sum -15.861 19.147 -10.947 27.166 Atomic orbital electron populations 1.22422 0.86095 1.02902 1.01048 1.61969 1.09069 1.14643 1.43563 1.22536 1.01211 0.88474 1.01210 1.22110 0.93502 0.99354 0.91755 1.21398 0.97718 1.00403 0.96269 1.30386 1.22700 1.12000 1.08768 1.04477 0.78599 0.72448 0.72914 1.93551 1.73252 1.45739 1.86102 1.93564 1.84439 1.66825 1.53816 1.55339 1.63658 1.24535 1.43914 1.21477 0.98596 0.80679 0.99677 1.21196 0.94354 0.95999 0.98210 1.22003 0.96005 0.99922 0.97972 1.21058 0.95272 0.87188 0.95148 1.44329 1.07749 1.02940 1.78577 1.19446 1.13846 0.92232 1.13897 0.92220 1.25761 1.01125 1.02657 0.95016 1.70166 1.42042 1.31823 1.13882 0.85378 0.78086 0.80151 0.77047 1.20377 1.21812 1.20506 1.20632 0.83091 0.98778 0.92688 1.22016 0.99310 0.95590 0.99405 0.95165 0.90727 0.90811 0.91185 0.90596 0.95005 0.89329 0.93422 0.90378 0.90063 0.82294 0.82149 0.74229 0.91074 0.88279 0.90330 0.90697 0.93354 0.96653 0.93766 0.94089 0.93039 0.98359 0.93059 0.89944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.57 127.69 1.22 1.44 16 2 N -0.57 -7.23 5.02 -948.86 -4.76 -11.99 16 3 C 0.01 0.15 9.32 127.69 1.19 1.34 16 4 C 0.06 0.68 4.96 86.31 0.43 1.10 16 5 C -0.12 -1.47 5.15 30.60 0.16 -1.32 16 6 C -0.61 -5.96 6.07 71.98 0.44 -5.52 16 7 S 2.62 49.88 5.46 -56.49 -0.31 49.57 16 8 O -1.00 -25.37 18.08 -127.65 -2.31 -27.68 16 9 O -1.00 -27.47 17.50 -127.65 -2.23 -29.70 16 10 N -1.11 -20.06 5.40 -187.51 -1.01 -21.07 16 11 C 0.12 2.40 5.52 86.38 0.48 2.87 16 12 C -0.08 -2.14 2.18 -10.66 -0.02 -2.16 16 13 C -0.12 -3.92 5.28 30.78 0.16 -3.76 16 14 C 0.14 5.78 6.51 86.36 0.56 6.34 16 15 N -0.61 -30.81 2.99 -699.11 -2.09 -32.90 16 16 C -0.26 -14.76 9.58 84.03 0.81 -13.95 16 17 H 0.06 3.30 7.88 -2.91 -0.02 3.28 16 18 C -0.05 -2.82 4.92 84.86 0.42 -2.41 16 19 N -0.93 -55.05 11.20 21.65 0.24 -54.81 16 20 Si 0.97 45.26 29.59 68.60 2.03 47.28 16 21 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 22 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 23 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 24 C 0.17 8.08 5.30 86.36 0.46 8.54 16 25 C -0.12 -4.12 5.36 30.67 0.16 -3.95 16 26 H 0.03 0.26 8.14 -2.39 -0.02 0.24 16 27 H 0.07 0.62 8.12 -2.39 -0.02 0.60 16 28 H 0.07 0.64 8.12 -2.39 -0.02 0.62 16 29 H 0.07 0.80 6.47 -2.39 -0.02 0.78 16 30 H 0.08 0.72 8.12 -2.39 -0.02 0.70 16 31 H 0.03 0.32 8.14 -2.39 -0.02 0.30 16 32 H 0.09 0.82 8.06 -2.38 -0.02 0.80 16 33 H 0.05 0.45 8.12 -2.39 -0.02 0.43 16 34 H 0.08 0.98 6.55 -2.39 -0.02 0.96 16 35 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 36 H 0.16 0.91 8.14 -2.39 -0.02 0.89 16 37 H 0.16 0.81 8.14 -2.39 -0.02 0.79 16 38 H 0.42 7.08 8.34 -96.74 -0.81 6.27 16 39 H 0.07 1.56 7.70 -2.39 -0.02 1.55 16 40 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 41 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 42 H 0.07 2.09 7.52 -2.39 -0.02 2.07 16 43 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 44 H 0.02 0.64 8.14 -2.39 -0.02 0.62 16 45 H 0.04 1.86 7.93 -2.39 -0.02 1.84 16 46 H 0.25 14.29 8.31 -92.71 -0.77 13.52 16 47 H 0.05 2.75 6.06 -2.39 -0.01 2.73 16 48 H 0.00 -0.08 8.14 -2.39 -0.02 -0.10 16 49 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 50 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 Total: -1.00 -76.81 401.28 -3.90 -80.70 By element: Atomic # 1 Polarization: 11.92 SS G_CDS: 0.09 Total: 12.01 kcal Atomic # 6 Polarization: -17.88 SS G_CDS: 6.46 Total: -11.42 kcal Atomic # 7 Polarization: -113.15 SS G_CDS: -7.62 Total: -120.77 kcal Atomic # 8 Polarization: -52.84 SS G_CDS: -4.54 Total: -57.38 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 2.03 Total: 47.28 kcal Atomic # 16 Polarization: 49.88 SS G_CDS: -0.31 Total: 49.57 kcal Total: -76.81 -3.90 -80.70 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601370303.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.149 kcal (2) G-P(sol) polarization free energy of solvation -76.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds