Wall clock time and date at job start Tue Mar 31 2020 17:26:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 N 1.46496 * 109.46863 * 2 1 4 4 C 1.46502 * 120.00397 * 85.00433 * 3 2 1 5 5 C 1.50700 * 109.47212 * 66.45962 * 4 3 2 6 6 H 1.08001 * 119.99656 * 356.61423 * 5 4 3 7 7 C 1.37868 * 120.00103 * 176.60512 * 5 4 3 8 8 N 1.31514 * 120.00017 * 0.02562 * 7 5 4 9 9 Si 1.86807 * 120.00102 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.46917 * 90.00086 * 9 7 5 11 11 H 1.48501 * 109.47199 * 210.00156 * 9 7 5 12 12 H 1.48500 * 109.46703 * 330.00032 * 9 7 5 13 13 S 1.65604 * 120.00134 * 264.99730 * 3 2 1 14 14 O 1.42104 * 106.39878 * 28.59904 * 13 3 2 15 15 O 1.42102 * 106.40528 * 161.51491 * 13 3 2 16 16 N 1.65596 * 107.22120 * 275.06191 * 13 3 2 17 17 C 1.50239 * 120.54830 * 263.15549 * 16 13 3 18 18 C 1.46652 * 106.97962 * 111.48227 * 17 16 13 19 19 C 1.52479 * 114.11189 * 58.14042 * 18 17 16 20 20 N 1.43914 * 105.41154 * 269.64131 * 19 18 17 21 21 C 1.46901 * 110.99415 * 223.42758 * 20 19 18 22 22 C 1.52998 * 109.47465 * 66.04889 * 21 20 19 23 23 C 1.48815 * 112.04765 * 98.70934 * 20 19 18 24 24 C 1.43653 * 120.55414 * 82.87961 * 16 13 3 25 25 H 1.08997 * 108.14149 * 147.40267 * 24 16 13 26 26 C 1.53001 * 108.14270 * 30.88244 * 24 16 13 27 27 H 1.08992 * 109.46880 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.46618 * 300.00169 * 1 2 3 29 29 H 1.08997 * 109.46789 * 59.99602 * 1 2 3 30 30 H 1.09003 * 109.46884 * 240.00530 * 2 1 3 31 31 H 1.08996 * 109.46940 * 119.99629 * 2 1 3 32 32 H 1.08995 * 109.47680 * 186.46583 * 4 3 2 33 33 H 1.09002 * 109.46824 * 306.46727 * 4 3 2 34 34 H 0.97006 * 120.00165 * 180.02562 * 8 7 5 35 35 H 1.08997 * 109.95261 * 230.84797 * 17 16 13 36 36 H 1.08997 * 109.94977 * 352.03462 * 17 16 13 37 37 H 1.09008 * 108.55085 * 179.33537 * 18 17 16 38 38 H 1.08998 * 108.56000 * 297.08892 * 18 17 16 39 39 H 1.08998 * 110.24939 * 28.61411 * 19 18 17 40 40 H 1.09001 * 110.24522 * 150.66706 * 19 18 17 41 41 H 1.09008 * 109.47092 * 186.04901 * 21 20 19 42 42 H 1.09003 * 109.47277 * 306.04800 * 21 20 19 43 43 H 1.09003 * 109.46945 * 59.99708 * 22 21 20 44 44 H 1.08995 * 109.47287 * 179.97438 * 22 21 20 45 45 H 1.08995 * 109.47312 * 299.99953 * 22 21 20 46 46 H 1.09001 * 109.23739 * 81.30241 * 23 20 19 47 47 H 1.08998 * 109.23890 * 200.72442 * 23 20 19 48 48 H 1.09007 * 109.47017 * 51.47353 * 26 24 16 49 49 H 1.08998 * 109.47743 * 171.47394 * 26 24 16 50 50 H 1.09001 * 109.47341 * 291.47688 * 26 24 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1584 2.1087 1.2639 5 6 3.2427 1.4706 2.0934 6 1 3.7367 0.5771 1.7412 7 6 3.6042 2.0276 3.3016 8 7 3.0024 3.1154 3.7306 9 14 4.9489 1.2370 4.3295 10 1 6.2641 1.8141 3.9524 11 1 4.6889 1.4960 5.7685 12 1 4.9624 -0.2276 4.0848 13 16 2.4122 2.1202 -1.4287 14 8 1.5985 1.5213 -2.4279 15 8 2.4218 3.5172 -1.1686 16 7 3.9741 1.6999 -1.7838 17 6 5.1109 2.6161 -1.4292 18 6 5.8755 1.9578 -0.3649 19 6 6.4139 0.5825 -0.7440 20 7 5.3880 -0.3497 -0.3574 21 6 5.9678 -1.5252 0.3059 22 6 6.5956 -1.1027 1.6356 23 6 4.5368 -0.7532 -1.5095 24 6 4.2652 0.4507 -2.4306 25 1 5.1385 0.5934 -3.0669 26 6 3.0817 0.0940 -3.3323 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3632 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 1.8934 -0.5138 -0.8901 31 1 1.8934 -0.5138 0.8900 32 1 2.4210 3.1465 1.0587 33 1 1.2154 2.0737 1.8096 34 1 3.2570 3.5075 4.5805 35 1 5.7465 2.7744 -2.3004 36 1 4.7224 3.5705 -1.0740 37 1 6.7162 2.5973 -0.0955 38 1 5.2315 1.8474 0.5075 39 1 6.5873 0.5284 -1.8188 40 1 7.3360 0.3756 -0.2008 41 1 5.1851 -2.2609 0.4911 42 1 6.7336 -1.9630 -0.3345 43 1 5.8298 -0.6650 2.2761 44 1 7.0254 -1.9750 2.1280 45 1 7.3783 -0.3671 1.4505 46 1 5.0454 -1.5333 -2.0759 47 1 3.5884 -1.1404 -1.1371 48 1 2.8467 0.9419 -3.9758 49 1 3.3401 -0.7681 -3.9471 50 1 2.2149 -0.1458 -2.7163 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601439987.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:26:48 Heat of formation + Delta-G solvation = -38.827588 kcal Electronic energy + Delta-G solvation = -31558.304194 eV Core-core repulsion = 27748.755294 eV Total energy + Delta-G solvation = -3809.548900 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -39.32709 -36.98453 -35.89236 -35.68169 -35.10855 -33.27901 -32.52068 -30.72800 -29.77675 -28.34943 -26.48366 -26.15008 -24.58913 -23.16907 -21.61038 -21.53690 -21.21989 -19.96699 -18.00671 -17.02422 -16.51432 -16.28245 -16.15510 -15.65130 -15.31757 -14.91990 -14.51530 -14.33518 -13.75281 -13.59408 -13.34994 -13.10834 -12.97120 -12.78771 -12.73514 -12.51490 -12.34882 -11.93759 -11.83582 -11.70475 -11.60862 -11.58268 -11.44352 -11.24988 -11.12595 -10.89558 -10.87578 -10.62788 -10.50325 -10.49269 -10.32500 -10.21772 -10.06695 -9.78346 -9.69943 -9.49036 -8.63509 -8.37461 -7.85962 -7.82487 -5.96997 -3.98638 1.37954 3.30592 3.37407 3.39111 3.50342 4.14244 4.21430 4.46944 4.81005 5.01605 5.10189 5.15464 5.33754 5.34090 5.39142 5.43268 5.48697 5.50353 5.60414 5.67036 5.73299 5.77576 5.79341 5.88558 5.93625 5.96130 6.04948 6.06549 6.19128 6.22955 6.25947 6.29035 6.40834 6.45206 6.53174 6.61813 6.72845 6.85780 6.87460 7.01557 7.16862 7.39876 7.51115 7.60733 7.62975 7.80784 8.04080 8.36477 9.11936 9.64767 11.11905 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.010843 B = 0.007777 C = 0.006008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2581.731810 B = 3599.520558 C = 4659.056302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.134 3.866 3 N -0.982 5.982 4 C 0.247 3.753 5 C -0.516 4.516 6 H 0.082 0.918 7 C 0.059 3.941 8 N -0.897 5.897 9 Si 0.887 3.113 10 H -0.282 1.282 11 H -0.294 1.294 12 H -0.269 1.269 13 S 2.778 3.222 14 O -0.994 6.994 15 O -0.986 6.986 16 N -0.987 5.987 17 C 0.136 3.864 18 C -0.156 4.156 19 C 0.063 3.937 20 N -0.518 5.518 21 C 0.057 3.943 22 C -0.158 4.158 23 C 0.038 3.962 24 C 0.154 3.846 25 H 0.069 0.931 26 C -0.180 4.180 27 H 0.054 0.946 28 H 0.060 0.940 29 H 0.054 0.946 30 H 0.057 0.943 31 H 0.083 0.917 32 H 0.051 0.949 33 H 0.025 0.975 34 H 0.260 0.740 35 H 0.061 0.939 36 H 0.097 0.903 37 H 0.057 0.943 38 H 0.117 0.883 39 H 0.039 0.961 40 H 0.066 0.934 41 H 0.069 0.931 42 H 0.022 0.978 43 H 0.076 0.924 44 H 0.050 0.950 45 H 0.052 0.948 46 H 0.041 0.959 47 H 0.079 0.921 48 H 0.071 0.929 49 H 0.050 0.950 50 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.466 -8.481 -10.366 14.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.008 3.992 3 N -0.823 5.823 4 C 0.124 3.876 5 C -0.555 4.555 6 H 0.100 0.900 7 C -0.142 4.142 8 N -0.536 5.536 9 Si 0.716 3.284 10 H -0.208 1.208 11 H -0.220 1.220 12 H -0.194 1.194 13 S 2.789 3.211 14 O -0.978 6.978 15 O -0.970 6.970 16 N -0.825 5.825 17 C 0.012 3.988 18 C -0.195 4.195 19 C -0.066 4.066 20 N -0.243 5.243 21 C -0.071 4.071 22 C -0.215 4.215 23 C -0.091 4.091 24 C 0.045 3.955 25 H 0.087 0.913 26 C -0.239 4.239 27 H 0.073 0.927 28 H 0.079 0.921 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.101 0.899 32 H 0.069 0.931 33 H 0.043 0.957 34 H 0.070 0.930 35 H 0.079 0.921 36 H 0.115 0.885 37 H 0.076 0.924 38 H 0.136 0.864 39 H 0.057 0.943 40 H 0.085 0.915 41 H 0.088 0.912 42 H 0.040 0.960 43 H 0.095 0.905 44 H 0.069 0.931 45 H 0.071 0.929 46 H 0.059 0.941 47 H 0.097 0.903 48 H 0.090 0.910 49 H 0.069 0.931 50 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 4.609 -7.512 -10.402 13.633 hybrid contribution 1.692 -1.090 0.497 2.073 sum 6.302 -8.602 -9.905 14.554 Atomic orbital electron populations 1.22223 0.97389 1.01060 1.02339 1.20991 0.93026 0.83290 1.01902 1.57597 1.78181 1.22712 1.23797 1.19145 0.97327 0.92158 0.78924 1.21665 1.18815 1.12088 1.02964 0.90038 1.24944 0.96557 0.94965 0.97731 1.69958 1.42037 1.20521 1.21132 0.86746 0.82518 0.79882 0.79291 1.20789 1.22045 1.19394 1.02033 0.73008 0.73040 0.73059 1.93640 1.68444 1.77621 1.58125 1.93539 1.86622 1.31120 1.85750 1.58158 1.24729 1.25479 1.74096 1.20843 0.87444 0.92992 0.97508 1.21086 1.00999 0.95091 1.02314 1.21575 0.93533 0.93375 0.98110 1.61847 1.22155 1.13475 1.26792 1.22038 0.97296 0.92501 0.95234 1.21977 1.01452 1.00750 0.97317 1.23324 0.98405 0.96124 0.91293 1.20252 0.99326 0.83790 0.92146 0.91279 1.22956 0.97960 1.02098 1.00881 0.92728 0.92129 0.92720 0.92451 0.89909 0.93121 0.95676 0.93026 0.92071 0.88522 0.92442 0.86443 0.94270 0.91543 0.91222 0.96012 0.90533 0.93089 0.92884 0.94121 0.90296 0.90962 0.93109 0.88582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.75 10.24 37.16 0.38 -2.37 16 2 C 0.13 2.32 5.63 -4.04 -0.02 2.30 16 3 N -0.98 -19.77 2.93 -115.66 -0.34 -20.11 16 4 C 0.25 6.01 5.62 -5.19 -0.03 5.98 16 5 C -0.52 -12.81 7.33 -34.44 -0.25 -13.07 16 6 H 0.08 1.95 7.50 -52.49 -0.39 1.56 16 7 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 8 N -0.90 -25.51 13.29 55.43 0.74 -24.78 16 9 Si 0.89 20.40 28.28 -169.99 -4.81 15.60 16 10 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 11 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 12 H -0.27 -5.89 6.24 56.52 0.35 -5.54 16 13 S 2.78 54.34 5.92 -107.50 -0.64 53.71 16 14 O -0.99 -19.12 11.82 -57.17 -0.68 -19.80 16 15 O -0.99 -22.85 15.02 -57.17 -0.86 -23.71 16 16 N -0.99 -16.05 3.02 -109.03 -0.33 -16.38 16 17 C 0.14 2.10 6.18 -4.98 -0.03 2.07 16 18 C -0.16 -2.45 5.33 -30.03 -0.16 -2.61 16 19 C 0.06 0.85 5.16 -5.68 -0.03 0.82 16 20 N -0.52 -7.46 4.02 -235.11 -0.95 -8.40 16 21 C 0.06 0.75 5.50 -3.82 -0.02 0.73 16 22 C -0.16 -2.26 9.87 37.16 0.37 -1.90 16 23 C 0.04 0.49 5.32 -2.24 -0.01 0.48 16 24 C 0.15 2.10 2.27 -68.92 -0.16 1.94 16 25 H 0.07 0.84 6.89 -51.93 -0.36 0.48 16 26 C -0.18 -2.45 7.33 37.16 0.27 -2.18 16 27 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 28 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 29 H 0.05 0.90 8.01 -51.93 -0.42 0.48 16 30 H 0.06 0.88 4.03 -51.93 -0.21 0.67 16 31 H 0.08 1.49 7.40 -51.93 -0.38 1.11 16 32 H 0.05 1.38 6.72 -51.93 -0.35 1.03 16 33 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 34 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 35 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.10 1.68 6.87 -51.93 -0.36 1.32 16 37 H 0.06 0.83 8.14 -51.92 -0.42 0.40 16 38 H 0.12 2.33 6.32 -51.93 -0.33 2.00 16 39 H 0.04 0.48 6.13 -51.93 -0.32 0.16 16 40 H 0.07 0.86 5.94 -51.93 -0.31 0.55 16 41 H 0.07 0.89 8.07 -51.92 -0.42 0.48 16 42 H 0.02 0.25 8.11 -51.93 -0.42 -0.17 16 43 H 0.08 1.35 5.80 -51.93 -0.30 1.05 16 44 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.05 0.74 6.42 -51.93 -0.33 0.41 16 46 H 0.04 0.46 8.00 -51.93 -0.42 0.04 16 47 H 0.08 1.06 5.56 -51.93 -0.29 0.78 16 48 H 0.07 1.07 7.16 -51.92 -0.37 0.70 16 49 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 50 H 0.10 1.45 4.03 -51.96 -0.21 1.24 16 LS Contribution 370.26 15.07 5.58 5.58 Total: -1.00 -29.46 370.26 -10.39 -39.85 By element: Atomic # 1 Polarization: 13.09 SS G_CDS: -8.32 Total: 4.77 kcal Atomic # 6 Polarization: -6.53 SS G_CDS: 0.21 Total: -6.33 kcal Atomic # 7 Polarization: -68.79 SS G_CDS: -0.88 Total: -69.67 kcal Atomic # 8 Polarization: -41.97 SS G_CDS: -1.53 Total: -43.50 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -4.81 Total: 15.60 kcal Atomic # 16 Polarization: 54.34 SS G_CDS: -0.64 Total: 53.71 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -29.46 -10.39 -39.85 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601439987.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.020 kcal (2) G-P(sol) polarization free energy of solvation -29.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds