Wall clock time and date at job start Tue Mar 31 2020 17:26:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 N 1.46496 * 109.46863 * 2 1 4 4 C 1.46502 * 120.00397 * 85.00433 * 3 2 1 5 5 C 1.50700 * 109.47212 * 66.45962 * 4 3 2 6 6 H 1.08001 * 119.99656 * 356.61423 * 5 4 3 7 7 C 1.37868 * 120.00103 * 176.60512 * 5 4 3 8 8 N 1.31514 * 120.00017 * 0.02562 * 7 5 4 9 9 Si 1.86807 * 120.00102 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.46917 * 90.00086 * 9 7 5 11 11 H 1.48501 * 109.47199 * 210.00156 * 9 7 5 12 12 H 1.48500 * 109.46703 * 330.00032 * 9 7 5 13 13 S 1.65604 * 120.00134 * 264.99730 * 3 2 1 14 14 O 1.42104 * 106.39878 * 28.59904 * 13 3 2 15 15 O 1.42102 * 106.40528 * 161.51491 * 13 3 2 16 16 N 1.65596 * 107.22120 * 275.06191 * 13 3 2 17 17 C 1.50239 * 120.54830 * 263.15549 * 16 13 3 18 18 C 1.46652 * 106.97962 * 111.48227 * 17 16 13 19 19 C 1.52479 * 114.11189 * 58.14042 * 18 17 16 20 20 N 1.43914 * 105.41154 * 269.64131 * 19 18 17 21 21 C 1.46901 * 110.99415 * 223.42758 * 20 19 18 22 22 C 1.52998 * 109.47465 * 66.04889 * 21 20 19 23 23 C 1.48815 * 112.04765 * 98.70934 * 20 19 18 24 24 C 1.43653 * 120.55414 * 82.87961 * 16 13 3 25 25 H 1.08997 * 108.14149 * 147.40267 * 24 16 13 26 26 C 1.53001 * 108.14270 * 30.88244 * 24 16 13 27 27 H 1.08992 * 109.46880 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.46618 * 300.00169 * 1 2 3 29 29 H 1.08997 * 109.46789 * 59.99602 * 1 2 3 30 30 H 1.09003 * 109.46884 * 240.00530 * 2 1 3 31 31 H 1.08996 * 109.46940 * 119.99629 * 2 1 3 32 32 H 1.08995 * 109.47680 * 186.46583 * 4 3 2 33 33 H 1.09002 * 109.46824 * 306.46727 * 4 3 2 34 34 H 0.97006 * 120.00165 * 180.02562 * 8 7 5 35 35 H 1.08997 * 109.95261 * 230.84797 * 17 16 13 36 36 H 1.08997 * 109.94977 * 352.03462 * 17 16 13 37 37 H 1.09008 * 108.55085 * 179.33537 * 18 17 16 38 38 H 1.08998 * 108.56000 * 297.08892 * 18 17 16 39 39 H 1.08998 * 110.24939 * 28.61411 * 19 18 17 40 40 H 1.09001 * 110.24522 * 150.66706 * 19 18 17 41 41 H 1.09008 * 109.47092 * 186.04901 * 21 20 19 42 42 H 1.09003 * 109.47277 * 306.04800 * 21 20 19 43 43 H 1.09003 * 109.46945 * 59.99708 * 22 21 20 44 44 H 1.08995 * 109.47287 * 179.97438 * 22 21 20 45 45 H 1.08995 * 109.47312 * 299.99953 * 22 21 20 46 46 H 1.09001 * 109.23739 * 81.30241 * 23 20 19 47 47 H 1.08998 * 109.23890 * 200.72442 * 23 20 19 48 48 H 1.09007 * 109.47017 * 51.47353 * 26 24 16 49 49 H 1.08998 * 109.47743 * 171.47394 * 26 24 16 50 50 H 1.09001 * 109.47341 * 291.47688 * 26 24 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1584 2.1087 1.2639 5 6 3.2427 1.4706 2.0934 6 1 3.7367 0.5771 1.7412 7 6 3.6042 2.0276 3.3016 8 7 3.0024 3.1154 3.7306 9 14 4.9489 1.2370 4.3295 10 1 6.2641 1.8141 3.9524 11 1 4.6889 1.4960 5.7685 12 1 4.9624 -0.2276 4.0848 13 16 2.4122 2.1202 -1.4287 14 8 1.5985 1.5213 -2.4279 15 8 2.4218 3.5172 -1.1686 16 7 3.9741 1.6999 -1.7838 17 6 5.1109 2.6161 -1.4292 18 6 5.8755 1.9578 -0.3649 19 6 6.4139 0.5825 -0.7440 20 7 5.3880 -0.3497 -0.3574 21 6 5.9678 -1.5252 0.3059 22 6 6.5956 -1.1027 1.6356 23 6 4.5368 -0.7532 -1.5095 24 6 4.2652 0.4507 -2.4306 25 1 5.1385 0.5934 -3.0669 26 6 3.0817 0.0940 -3.3323 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3632 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 1.8934 -0.5138 -0.8901 31 1 1.8934 -0.5138 0.8900 32 1 2.4210 3.1465 1.0587 33 1 1.2154 2.0737 1.8096 34 1 3.2570 3.5075 4.5805 35 1 5.7465 2.7744 -2.3004 36 1 4.7224 3.5705 -1.0740 37 1 6.7162 2.5973 -0.0955 38 1 5.2315 1.8474 0.5075 39 1 6.5873 0.5284 -1.8188 40 1 7.3360 0.3756 -0.2008 41 1 5.1851 -2.2609 0.4911 42 1 6.7336 -1.9630 -0.3345 43 1 5.8298 -0.6650 2.2761 44 1 7.0254 -1.9750 2.1280 45 1 7.3783 -0.3671 1.4505 46 1 5.0454 -1.5333 -2.0759 47 1 3.5884 -1.1404 -1.1371 48 1 2.8467 0.9419 -3.9758 49 1 3.3401 -0.7681 -3.9471 50 1 2.2149 -0.1458 -2.7163 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601439987.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:26:47 Heat of formation + Delta-G solvation = -59.324045 kcal Electronic energy + Delta-G solvation = -31559.192987 eV Core-core repulsion = 27748.755294 eV Total energy + Delta-G solvation = -3810.437693 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.44106 -38.53628 -37.54882 -36.97914 -36.62143 -34.59363 -34.35076 -31.83235 -31.37720 -29.50075 -28.36018 -27.26011 -25.66442 -24.93062 -23.12028 -22.67241 -22.54756 -21.06623 -19.50370 -18.59316 -18.25886 -17.77182 -17.57008 -16.83444 -16.76998 -16.29018 -15.91903 -15.63906 -15.32048 -14.88608 -14.68638 -14.52270 -14.36357 -14.12016 -13.96261 -13.88548 -13.56071 -13.43477 -13.34610 -13.27872 -13.14773 -12.93925 -12.81245 -12.67410 -12.55670 -12.46936 -12.20072 -12.12842 -12.02534 -11.73954 -11.60070 -11.58871 -11.43251 -11.34462 -11.29598 -10.92260 -10.45649 -9.88580 -9.53992 -8.84536 -8.02369 -6.09200 -0.16090 1.45802 1.46523 1.56606 2.05147 2.51688 2.67802 3.13767 3.30609 3.52378 3.65805 3.99726 4.09693 4.14871 4.21367 4.33750 4.37399 4.44156 4.47775 4.54562 4.55425 4.63361 4.68715 4.74155 4.76481 4.82209 4.89662 4.94953 5.00936 5.04166 5.05985 5.16496 5.22115 5.27143 5.29255 5.34767 5.39214 5.47025 5.49673 5.65279 5.69620 5.79402 5.89995 5.96952 6.15506 6.33726 6.42046 6.59437 7.08291 7.58084 9.07047 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.010843 B = 0.007777 C = 0.006008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2581.731810 B = 3599.520558 C = 4659.056302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.131 3.869 3 N -0.986 5.986 4 C 0.265 3.735 5 C -0.496 4.496 6 H 0.093 0.907 7 C 0.006 3.994 8 N -0.941 5.941 9 Si 0.946 3.054 10 H -0.278 1.278 11 H -0.304 1.304 12 H -0.249 1.249 13 S 2.784 3.216 14 O -0.992 6.992 15 O -1.030 7.030 16 N -0.981 5.981 17 C 0.134 3.866 18 C -0.153 4.153 19 C 0.071 3.929 20 N -0.546 5.546 21 C 0.062 3.938 22 C -0.157 4.157 23 C 0.040 3.960 24 C 0.147 3.853 25 H 0.098 0.902 26 C -0.178 4.178 27 H 0.087 0.913 28 H 0.041 0.959 29 H 0.048 0.952 30 H 0.084 0.916 31 H 0.075 0.925 32 H 0.014 0.986 33 H -0.001 1.001 34 H 0.257 0.743 35 H 0.100 0.900 36 H 0.067 0.933 37 H 0.066 0.934 38 H 0.073 0.927 39 H 0.062 0.938 40 H 0.074 0.926 41 H 0.071 0.929 42 H 0.046 0.954 43 H 0.039 0.961 44 H 0.068 0.932 45 H 0.053 0.947 46 H 0.072 0.928 47 H 0.071 0.929 48 H 0.057 0.943 49 H 0.084 0.916 50 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.652 -11.578 -12.335 18.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.005 3.995 3 N -0.826 5.826 4 C 0.141 3.859 5 C -0.536 4.536 6 H 0.111 0.889 7 C -0.191 4.191 8 N -0.583 5.583 9 Si 0.773 3.227 10 H -0.204 1.204 11 H -0.231 1.231 12 H -0.172 1.172 13 S 2.796 3.204 14 O -0.976 6.976 15 O -1.014 7.014 16 N -0.821 5.821 17 C 0.011 3.989 18 C -0.192 4.192 19 C -0.058 4.058 20 N -0.271 5.271 21 C -0.066 4.066 22 C -0.214 4.214 23 C -0.089 4.089 24 C 0.039 3.961 25 H 0.116 0.884 26 C -0.237 4.237 27 H 0.106 0.894 28 H 0.060 0.940 29 H 0.067 0.933 30 H 0.102 0.898 31 H 0.094 0.906 32 H 0.032 0.968 33 H 0.016 0.984 34 H 0.066 0.934 35 H 0.118 0.882 36 H 0.085 0.915 37 H 0.084 0.916 38 H 0.091 0.909 39 H 0.080 0.920 40 H 0.092 0.908 41 H 0.089 0.911 42 H 0.064 0.936 43 H 0.058 0.942 44 H 0.087 0.913 45 H 0.072 0.928 46 H 0.090 0.910 47 H 0.089 0.911 48 H 0.076 0.924 49 H 0.102 0.898 50 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 6.782 -10.652 -12.394 17.694 hybrid contribution 1.006 -0.147 1.008 1.431 sum 7.788 -10.799 -11.386 17.519 Atomic orbital electron populations 1.22204 0.96567 1.02866 1.01094 1.21185 0.93779 0.81730 1.02767 1.57503 1.79088 1.23681 1.22344 1.18616 0.95884 0.90925 0.80501 1.21854 1.17800 1.11635 1.02305 0.88879 1.25708 0.98764 0.95431 0.99213 1.70115 1.44163 1.22458 1.21600 0.85791 0.79852 0.80171 0.76847 1.20406 1.23136 1.17238 1.01719 0.73925 0.72008 0.72790 1.93665 1.69299 1.77146 1.57466 1.93480 1.87525 1.34128 1.86283 1.57923 1.23376 1.26970 1.73835 1.20934 0.87276 0.91615 0.99110 1.21035 1.00429 0.97233 1.00534 1.21501 0.93358 0.91385 0.99508 1.61723 1.22994 1.14477 1.27870 1.22000 0.97864 0.91985 0.94728 1.21960 1.00436 1.01335 0.97683 1.23317 0.98273 0.96248 0.91055 1.20555 1.00394 0.82706 0.92440 0.88443 1.22872 0.97255 1.02849 1.00748 0.89395 0.93982 0.93322 0.89831 0.90639 0.96791 0.98351 0.93423 0.88169 0.91492 0.91591 0.90864 0.91997 0.90754 0.91093 0.93578 0.94178 0.91334 0.92792 0.91042 0.91098 0.92438 0.89762 0.90318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.33 10.24 71.99 0.74 -4.59 16 2 C 0.13 4.44 5.63 86.38 0.49 4.93 16 3 N -0.99 -40.65 2.93 -519.84 -1.52 -42.17 16 4 C 0.26 13.59 5.62 85.63 0.48 14.07 16 5 C -0.50 -25.35 7.33 25.60 0.19 -25.16 16 6 H 0.09 4.48 7.50 -2.91 -0.02 4.46 16 7 C 0.01 0.32 5.46 84.65 0.46 0.78 16 8 N -0.94 -55.99 13.29 21.44 0.28 -55.71 16 9 Si 0.95 42.68 28.28 68.60 1.94 44.62 16 10 H -0.28 -12.27 7.11 99.48 0.71 -11.57 16 11 H -0.30 -14.15 7.11 99.48 0.71 -13.45 16 12 H -0.25 -10.29 6.24 99.48 0.62 -9.67 16 13 S 2.78 110.28 5.92 -56.49 -0.33 109.94 16 14 O -0.99 -37.65 11.82 -128.00 -1.51 -39.16 16 15 O -1.03 -50.06 15.02 -128.00 -1.92 -51.99 16 16 N -0.98 -30.52 3.02 -498.87 -1.51 -32.02 16 17 C 0.13 4.00 6.18 83.68 0.52 4.51 16 18 C -0.15 -4.60 5.33 28.46 0.15 -4.45 16 19 C 0.07 1.67 5.16 86.69 0.45 2.11 16 20 N -0.55 -13.93 4.02 -897.76 -3.61 -17.53 16 21 C 0.06 1.38 5.50 86.30 0.47 1.86 16 22 C -0.16 -4.06 9.87 71.98 0.71 -3.34 16 23 C 0.04 0.87 5.32 86.27 0.46 1.33 16 24 C 0.15 3.47 2.27 45.86 0.10 3.57 16 25 H 0.10 1.84 6.89 -2.39 -0.02 1.82 16 26 C -0.18 -4.25 7.33 71.98 0.53 -3.73 16 27 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 28 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 29 H 0.05 1.58 8.01 -2.39 -0.02 1.56 16 30 H 0.08 2.40 4.03 -2.39 -0.01 2.39 16 31 H 0.08 2.67 7.40 -2.39 -0.02 2.66 16 32 H 0.01 0.83 6.72 -2.39 -0.02 0.81 16 33 H 0.00 -0.08 8.14 -2.39 -0.02 -0.10 16 34 H 0.26 14.70 8.31 -92.70 -0.77 13.93 16 35 H 0.10 2.22 8.14 -2.39 -0.02 2.20 16 36 H 0.07 2.40 6.87 -2.39 -0.02 2.38 16 37 H 0.07 1.82 8.14 -2.38 -0.02 1.80 16 38 H 0.07 2.91 6.32 -2.39 -0.02 2.89 16 39 H 0.06 1.18 6.13 -2.39 -0.01 1.17 16 40 H 0.07 1.64 5.94 -2.39 -0.01 1.62 16 41 H 0.07 1.57 8.07 -2.38 -0.02 1.55 16 42 H 0.05 0.83 8.11 -2.39 -0.02 0.81 16 43 H 0.04 1.33 5.80 -2.39 -0.01 1.31 16 44 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 45 H 0.05 1.35 6.42 -2.39 -0.02 1.34 16 46 H 0.07 1.17 8.00 -2.39 -0.02 1.15 16 47 H 0.07 1.66 5.56 -2.39 -0.01 1.65 16 48 H 0.06 1.55 7.16 -2.38 -0.02 1.53 16 49 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 50 H 0.08 2.17 4.03 -2.95 -0.01 2.15 16 Total: -1.00 -67.59 370.26 -1.60 -69.19 By element: Atomic # 1 Polarization: 22.08 SS G_CDS: 0.84 Total: 22.92 kcal Atomic # 6 Polarization: -13.84 SS G_CDS: 5.75 Total: -8.10 kcal Atomic # 7 Polarization: -141.08 SS G_CDS: -6.35 Total: -147.43 kcal Atomic # 8 Polarization: -87.71 SS G_CDS: -3.44 Total: -91.15 kcal Atomic # 14 Polarization: 42.68 SS G_CDS: 1.94 Total: 44.62 kcal Atomic # 16 Polarization: 110.28 SS G_CDS: -0.33 Total: 109.94 kcal Total: -67.59 -1.60 -69.19 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601439987.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.866 kcal (2) G-P(sol) polarization free energy of solvation -67.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds