Wall clock time and date at job start Tue Mar 31 2020 17:26:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46898 * 109.47010 * 2 1 4 4 C 1.46192 * 111.00110 * 207.08051 * 3 2 1 5 5 C 1.51333 * 109.10652 * 144.77293 * 4 3 2 6 6 C 1.53797 * 109.62257 * 92.39517 * 5 4 3 7 7 N 1.47609 * 111.30455 * 319.98512 * 6 5 4 8 8 S 1.65606 * 118.74717 * 138.31921 * 7 6 5 9 9 O 1.42102 * 106.39870 * 212.69801 * 8 7 6 10 10 O 1.42101 * 106.40006 * 345.61802 * 8 7 6 11 11 N 1.65600 * 107.21651 * 99.15906 * 8 7 6 12 12 C 1.46502 * 119.99938 * 108.04979 * 11 8 7 13 13 C 1.46503 * 120.00164 * 288.04294 * 11 8 7 14 14 H 1.08999 * 109.46657 * 0.02562 * 13 11 8 15 15 C 1.52996 * 109.47242 * 240.00303 * 13 11 8 16 16 C 1.50699 * 109.46825 * 120.00246 * 13 11 8 17 17 H 1.07995 * 120.00623 * 3.59944 * 16 13 11 18 18 C 1.37879 * 119.99636 * 183.60122 * 16 13 11 19 19 N 1.31517 * 120.00207 * 7.23647 * 18 16 13 20 20 Si 1.86806 * 119.99900 * 187.23092 * 18 16 13 21 21 H 1.48501 * 109.46864 * 94.99049 * 20 18 16 22 22 H 1.48495 * 109.47205 * 214.98830 * 20 18 16 23 23 H 1.48504 * 109.46920 * 334.99129 * 20 18 16 24 24 C 1.44886 * 122.50674 * 318.29468 * 7 6 5 25 25 H 1.08996 * 109.43357 * 329.68464 * 24 7 6 26 26 C 1.52996 * 109.40266 * 209.79237 * 24 7 6 27 27 C 1.41447 * 110.99978 * 76.04389 * 3 2 1 28 28 H 1.09001 * 109.47293 * 62.02435 * 1 2 3 29 29 H 1.09003 * 109.46912 * 182.01906 * 1 2 3 30 30 H 1.08992 * 109.47135 * 302.01765 * 1 2 3 31 31 H 1.09006 * 109.46510 * 240.00022 * 2 1 3 32 32 H 1.08998 * 109.46833 * 120.00527 * 2 1 3 33 33 H 1.08995 * 109.53716 * 264.65766 * 4 3 2 34 34 H 1.09008 * 109.53280 * 24.88426 * 4 3 2 35 35 H 1.08994 * 109.42351 * 332.36447 * 5 4 3 36 36 H 1.09003 * 109.44278 * 212.43904 * 5 4 3 37 37 H 1.09002 * 109.11153 * 199.51160 * 6 5 4 38 38 H 1.09001 * 109.06665 * 80.42280 * 6 5 4 39 39 H 1.08992 * 109.47217 * 87.70950 * 12 11 8 40 40 H 1.08998 * 109.46893 * 207.70990 * 12 11 8 41 41 H 1.09000 * 109.46911 * 327.70703 * 12 11 8 42 42 H 1.09003 * 109.47190 * 303.91939 * 15 13 11 43 43 H 1.09001 * 109.47128 * 63.92160 * 15 13 11 44 44 H 1.08997 * 109.47223 * 183.92151 * 15 13 11 45 45 H 0.96994 * 119.99998 * 180.02562 * 19 18 16 46 46 H 1.09006 * 109.47174 * 289.22934 * 26 24 7 47 47 H 1.09006 * 109.47047 * 49.21954 * 26 24 7 48 48 H 1.09000 * 109.47320 * 169.22137 * 26 24 7 49 49 H 1.08999 * 109.38584 * 311.84608 * 27 3 2 50 50 H 1.08999 * 109.38051 * 71.52436 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.3400 1.4739 -0.6213 5 6 3.4454 2.7816 -1.3757 6 6 4.0539 3.8579 -0.4610 7 7 3.5268 3.7538 0.9139 8 16 4.5729 3.9401 2.1841 9 8 4.0950 3.0979 3.2242 10 8 5.8830 3.8399 1.6430 11 7 4.4098 5.4952 2.7295 12 6 3.7467 5.7568 4.0094 13 6 4.9287 6.6093 1.9321 14 1 5.3840 6.2224 1.0204 15 6 5.9783 7.3715 2.7432 16 6 3.7985 7.5392 1.5731 17 1 2.8050 7.3540 1.9538 18 6 4.0329 8.6267 0.7586 19 7 5.2047 8.7746 0.1801 20 14 2.6859 9.8899 0.4764 21 1 2.8552 11.0154 1.4303 22 1 2.7717 10.4028 -0.9145 23 1 1.3601 9.2557 0.6894 24 6 2.1290 3.4954 1.1944 25 1 1.5156 3.9144 0.3968 26 6 1.7487 4.1476 2.5251 27 6 1.8883 1.9690 1.2815 28 1 -0.3634 0.4821 -0.9076 29 1 -0.3633 -1.0271 0.0362 30 1 -0.3633 0.5448 0.8713 31 1 1.8933 -0.5139 -0.8901 32 1 1.8933 -0.5139 0.8899 33 1 4.1091 1.4352 0.1500 34 1 3.4740 0.6422 -1.3132 35 1 2.4522 3.0965 -1.6956 36 1 4.0823 2.6459 -2.2498 37 1 3.8148 4.8432 -0.8613 38 1 5.1367 3.7352 -0.4383 39 1 4.4791 5.7067 4.8149 40 1 3.2963 6.7492 3.9890 41 1 2.9712 5.0092 4.1763 42 1 5.5413 7.6987 3.6867 43 1 6.8277 6.7183 2.9433 44 1 6.3138 8.2408 2.1775 45 1 5.3697 9.5398 -0.3926 46 1 2.2194 3.6035 3.3441 47 1 2.0901 5.1827 2.5332 48 1 0.6658 4.1212 2.6463 49 1 0.8846 1.7822 1.6632 50 1 2.6191 1.5255 1.9578 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601440054.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:26:54 Heat of formation + Delta-G solvation = -52.185584 kcal Electronic energy + Delta-G solvation = -30571.059073 eV Core-core repulsion = 26760.930927 eV Total energy + Delta-G solvation = -3810.128146 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -39.39030 -36.92972 -36.29483 -35.70696 -35.20960 -33.34787 -32.58390 -30.97233 -29.34339 -28.39290 -26.48727 -25.51045 -25.18702 -24.45687 -22.02350 -21.05892 -20.82512 -20.29646 -17.95428 -17.01561 -16.61184 -16.59477 -16.19417 -15.77445 -15.40579 -15.07303 -14.58713 -14.41176 -13.84617 -13.57262 -13.51471 -13.19483 -13.00863 -12.81174 -12.70534 -12.32783 -12.14396 -12.06964 -12.00118 -11.81111 -11.69218 -11.46810 -11.42719 -11.33362 -11.16370 -11.03560 -10.95907 -10.85329 -10.75760 -10.58472 -10.46935 -10.41922 -10.30710 -10.08818 -10.03644 -9.32144 -8.56553 -8.47690 -8.10727 -7.93574 -6.13089 -4.18461 1.28958 3.23270 3.31657 3.32651 3.48379 3.90070 4.08638 4.34649 4.86180 4.88808 4.96067 5.04166 5.18923 5.22194 5.28192 5.34448 5.40354 5.42828 5.57696 5.63579 5.68155 5.71634 5.80113 5.80474 5.82056 5.95149 6.01576 6.04531 6.15835 6.19695 6.26311 6.32658 6.36675 6.41884 6.51011 6.64022 6.71081 6.81552 6.85072 7.06133 7.11149 7.24534 7.46556 7.49864 7.60949 7.73331 7.96064 8.22979 8.84341 9.47070 10.93691 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.014582 B = 0.004889 C = 0.004480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1919.711674 B = 5725.943200 C = 6248.399724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.056 3.944 3 N -0.562 5.562 4 C 0.075 3.925 5 C -0.124 4.124 6 C 0.114 3.886 7 N -0.992 5.992 8 S 2.781 3.219 9 O -0.999 6.999 10 O -0.990 6.990 11 N -0.993 5.993 12 C 0.092 3.908 13 C 0.275 3.725 14 H 0.051 0.949 15 C -0.142 4.142 16 C -0.523 4.523 17 H 0.063 0.937 18 C 0.067 3.933 19 N -0.886 5.886 20 Si 0.892 3.108 21 H -0.281 1.281 22 H -0.287 1.287 23 H -0.274 1.274 24 C 0.168 3.832 25 H 0.089 0.911 26 C -0.228 4.228 27 C 0.058 3.942 28 H 0.060 0.940 29 H 0.053 0.947 30 H 0.055 0.945 31 H 0.069 0.931 32 H 0.032 0.968 33 H 0.037 0.963 34 H 0.068 0.932 35 H 0.079 0.921 36 H 0.075 0.925 37 H 0.074 0.926 38 H 0.089 0.911 39 H 0.037 0.963 40 H 0.080 0.920 41 H 0.067 0.933 42 H 0.033 0.967 43 H 0.017 0.983 44 H 0.079 0.921 45 H 0.263 0.737 46 H 0.098 0.902 47 H 0.091 0.909 48 H 0.074 0.926 49 H 0.080 0.920 50 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.265 -12.657 -0.272 14.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.071 4.071 3 N -0.286 5.286 4 C -0.052 4.052 5 C -0.164 4.164 6 C -0.011 4.011 7 N -0.830 5.830 8 S 2.792 3.208 9 O -0.983 6.983 10 O -0.974 6.974 11 N -0.834 5.834 12 C -0.055 4.055 13 C 0.172 3.828 14 H 0.069 0.931 15 C -0.201 4.201 16 C -0.562 4.562 17 H 0.081 0.919 18 C -0.136 4.136 19 N -0.524 5.524 20 Si 0.720 3.280 21 H -0.207 1.207 22 H -0.213 1.213 23 H -0.199 1.199 24 C 0.061 3.939 25 H 0.107 0.893 26 C -0.286 4.286 27 C -0.072 4.072 28 H 0.080 0.920 29 H 0.072 0.928 30 H 0.074 0.926 31 H 0.088 0.912 32 H 0.051 0.949 33 H 0.055 0.945 34 H 0.086 0.914 35 H 0.098 0.902 36 H 0.093 0.907 37 H 0.092 0.908 38 H 0.107 0.893 39 H 0.056 0.944 40 H 0.098 0.902 41 H 0.085 0.915 42 H 0.053 0.947 43 H 0.036 0.964 44 H 0.097 0.903 45 H 0.073 0.927 46 H 0.116 0.884 47 H 0.110 0.890 48 H 0.093 0.907 49 H 0.098 0.902 50 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -6.829 -12.940 -0.333 14.635 hybrid contribution -0.486 0.791 0.100 0.934 sum -7.315 -12.149 -0.233 14.183 Atomic orbital electron populations 1.21802 0.95208 1.00921 1.02519 1.22077 0.96005 0.88514 1.00489 1.58301 1.26635 1.17831 1.25880 1.21551 0.88470 0.97893 0.97317 1.21817 1.02317 0.94550 0.97680 1.21733 0.98837 0.99601 0.80912 1.57609 1.19304 1.86541 1.19579 1.01892 0.73037 0.73317 0.72507 1.93468 1.81577 1.66557 1.56674 1.93540 1.37165 1.86843 1.79833 1.57747 1.71922 1.24426 1.29346 1.21496 0.96660 1.03097 0.84202 1.18581 0.92523 0.83174 0.88524 0.93129 1.21998 0.97381 1.01212 0.99558 1.21341 0.95166 1.09522 1.30199 0.91863 1.24908 0.95627 0.97933 0.95150 1.69942 1.22271 1.29652 1.30502 0.86584 0.82177 0.81789 0.77428 1.20749 1.21298 1.19897 1.20652 0.82025 0.93184 0.98059 0.89319 1.23233 1.03981 1.03533 0.97873 1.21867 1.01371 0.95343 0.88639 0.92042 0.92800 0.92644 0.91247 0.94935 0.94491 0.91395 0.90221 0.90690 0.90758 0.89302 0.94410 0.90174 0.91511 0.94750 0.96420 0.90252 0.92681 0.88371 0.89035 0.90742 0.90162 0.94612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 10.03 37.16 0.37 -0.96 16 2 C 0.06 0.59 5.76 -3.82 -0.02 0.57 16 3 N -0.56 -7.10 3.78 -239.46 -0.90 -8.01 16 4 C 0.07 0.97 5.32 -5.05 -0.03 0.94 16 5 C -0.12 -1.61 5.79 -27.16 -0.16 -1.77 16 6 C 0.11 1.87 6.28 -3.02 -0.02 1.85 16 7 N -0.99 -17.15 2.49 -106.12 -0.26 -17.41 16 8 S 2.78 55.78 5.19 -107.50 -0.56 55.22 16 9 O -1.00 -19.99 12.99 -57.17 -0.74 -20.73 16 10 O -0.99 -22.78 15.63 -57.17 -0.89 -23.68 16 11 N -0.99 -20.42 2.38 -115.86 -0.28 -20.70 16 12 C 0.09 1.63 7.82 59.85 0.47 2.09 16 13 C 0.28 6.54 2.47 -69.08 -0.17 6.37 16 14 H 0.05 1.33 7.45 -51.93 -0.39 0.95 16 15 C -0.14 -3.32 9.12 37.16 0.34 -2.98 16 16 C -0.52 -12.95 7.98 -34.44 -0.27 -13.22 16 17 H 0.06 1.53 7.09 -52.49 -0.37 1.16 16 18 C 0.07 1.71 5.20 -17.82 -0.09 1.62 16 19 N -0.89 -23.81 11.92 55.43 0.66 -23.15 16 20 Si 0.89 20.04 29.54 -169.99 -5.02 15.01 16 21 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 22 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 23 H -0.27 -6.08 7.11 56.52 0.40 -5.67 16 24 C 0.17 2.56 2.60 -67.86 -0.18 2.38 16 25 H 0.09 1.33 8.11 -51.93 -0.42 0.91 16 26 C -0.23 -3.38 6.85 37.16 0.25 -3.13 16 27 C 0.06 0.81 4.45 -5.74 -0.03 0.78 16 28 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.05 0.52 6.69 -51.93 -0.35 0.17 16 31 H 0.07 0.65 7.30 -51.93 -0.38 0.27 16 32 H 0.03 0.35 7.98 -51.93 -0.41 -0.06 16 33 H 0.04 0.55 7.32 -51.93 -0.38 0.17 16 34 H 0.07 0.73 7.22 -51.92 -0.37 0.36 16 35 H 0.08 1.04 7.98 -51.93 -0.41 0.62 16 36 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 38 H 0.09 1.56 6.59 -51.93 -0.34 1.21 16 39 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.08 1.43 6.99 -51.93 -0.36 1.06 16 41 H 0.07 1.06 4.53 -51.93 -0.24 0.82 16 42 H 0.03 0.74 7.54 -51.93 -0.39 0.35 16 43 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 44 H 0.08 2.00 6.57 -51.93 -0.34 1.66 16 45 H 0.26 6.79 8.31 -40.82 -0.34 6.45 16 46 H 0.10 1.55 4.50 -51.93 -0.23 1.31 16 47 H 0.09 1.51 5.26 -51.93 -0.27 1.24 16 48 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 49 H 0.08 0.98 6.43 -51.93 -0.33 0.64 16 50 H 0.04 0.57 7.23 -51.93 -0.38 0.19 16 LS Contribution 372.99 15.07 5.62 5.62 Total: -1.00 -29.05 372.99 -10.38 -39.43 By element: Atomic # 1 Polarization: 12.32 SS G_CDS: -8.47 Total: 3.85 kcal Atomic # 6 Polarization: -5.93 SS G_CDS: 0.47 Total: -5.46 kcal Atomic # 7 Polarization: -68.49 SS G_CDS: -0.78 Total: -69.27 kcal Atomic # 8 Polarization: -42.77 SS G_CDS: -1.64 Total: -44.41 kcal Atomic # 14 Polarization: 20.04 SS G_CDS: -5.02 Total: 15.01 kcal Atomic # 16 Polarization: 55.78 SS G_CDS: -0.56 Total: 55.22 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -29.05 -10.38 -39.43 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601440054.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.751 kcal (2) G-P(sol) polarization free energy of solvation -29.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds