Wall clock time and date at job start Tue Mar 31 2020 17:26:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46898 * 109.47010 * 2 1 4 4 C 1.46192 * 111.00110 * 207.08051 * 3 2 1 5 5 C 1.51333 * 109.10652 * 144.77293 * 4 3 2 6 6 C 1.53797 * 109.62257 * 92.39517 * 5 4 3 7 7 N 1.47609 * 111.30455 * 319.98512 * 6 5 4 8 8 S 1.65606 * 118.74717 * 138.31921 * 7 6 5 9 9 O 1.42102 * 106.39870 * 212.69801 * 8 7 6 10 10 O 1.42101 * 106.40006 * 345.61802 * 8 7 6 11 11 N 1.65600 * 107.21651 * 99.15906 * 8 7 6 12 12 C 1.46502 * 119.99938 * 108.04979 * 11 8 7 13 13 C 1.46503 * 120.00164 * 288.04294 * 11 8 7 14 14 H 1.08999 * 109.46657 * 0.02562 * 13 11 8 15 15 C 1.52996 * 109.47242 * 240.00303 * 13 11 8 16 16 C 1.50699 * 109.46825 * 120.00246 * 13 11 8 17 17 H 1.07995 * 120.00623 * 3.59944 * 16 13 11 18 18 C 1.37879 * 119.99636 * 183.60122 * 16 13 11 19 19 N 1.31517 * 120.00207 * 7.23647 * 18 16 13 20 20 Si 1.86806 * 119.99900 * 187.23092 * 18 16 13 21 21 H 1.48501 * 109.46864 * 94.99049 * 20 18 16 22 22 H 1.48495 * 109.47205 * 214.98830 * 20 18 16 23 23 H 1.48504 * 109.46920 * 334.99129 * 20 18 16 24 24 C 1.44886 * 122.50674 * 318.29468 * 7 6 5 25 25 H 1.08996 * 109.43357 * 329.68464 * 24 7 6 26 26 C 1.52996 * 109.40266 * 209.79237 * 24 7 6 27 27 C 1.41447 * 110.99978 * 76.04389 * 3 2 1 28 28 H 1.09001 * 109.47293 * 62.02435 * 1 2 3 29 29 H 1.09003 * 109.46912 * 182.01906 * 1 2 3 30 30 H 1.08992 * 109.47135 * 302.01765 * 1 2 3 31 31 H 1.09006 * 109.46510 * 240.00022 * 2 1 3 32 32 H 1.08998 * 109.46833 * 120.00527 * 2 1 3 33 33 H 1.08995 * 109.53716 * 264.65766 * 4 3 2 34 34 H 1.09008 * 109.53280 * 24.88426 * 4 3 2 35 35 H 1.08994 * 109.42351 * 332.36447 * 5 4 3 36 36 H 1.09003 * 109.44278 * 212.43904 * 5 4 3 37 37 H 1.09002 * 109.11153 * 199.51160 * 6 5 4 38 38 H 1.09001 * 109.06665 * 80.42280 * 6 5 4 39 39 H 1.08992 * 109.47217 * 87.70950 * 12 11 8 40 40 H 1.08998 * 109.46893 * 207.70990 * 12 11 8 41 41 H 1.09000 * 109.46911 * 327.70703 * 12 11 8 42 42 H 1.09003 * 109.47190 * 303.91939 * 15 13 11 43 43 H 1.09001 * 109.47128 * 63.92160 * 15 13 11 44 44 H 1.08997 * 109.47223 * 183.92151 * 15 13 11 45 45 H 0.96994 * 119.99998 * 180.02562 * 19 18 16 46 46 H 1.09006 * 109.47174 * 289.22934 * 26 24 7 47 47 H 1.09006 * 109.47047 * 49.21954 * 26 24 7 48 48 H 1.09000 * 109.47320 * 169.22137 * 26 24 7 49 49 H 1.08999 * 109.38584 * 311.84608 * 27 3 2 50 50 H 1.08999 * 109.38051 * 71.52436 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.3400 1.4739 -0.6213 5 6 3.4454 2.7816 -1.3757 6 6 4.0539 3.8579 -0.4610 7 7 3.5268 3.7538 0.9139 8 16 4.5729 3.9401 2.1841 9 8 4.0950 3.0979 3.2242 10 8 5.8830 3.8399 1.6430 11 7 4.4098 5.4952 2.7295 12 6 3.7467 5.7568 4.0094 13 6 4.9287 6.6093 1.9321 14 1 5.3840 6.2224 1.0204 15 6 5.9783 7.3715 2.7432 16 6 3.7985 7.5392 1.5731 17 1 2.8050 7.3540 1.9538 18 6 4.0329 8.6267 0.7586 19 7 5.2047 8.7746 0.1801 20 14 2.6859 9.8899 0.4764 21 1 2.8552 11.0154 1.4303 22 1 2.7717 10.4028 -0.9145 23 1 1.3601 9.2557 0.6894 24 6 2.1290 3.4954 1.1944 25 1 1.5156 3.9144 0.3968 26 6 1.7487 4.1476 2.5251 27 6 1.8883 1.9690 1.2815 28 1 -0.3634 0.4821 -0.9076 29 1 -0.3633 -1.0271 0.0362 30 1 -0.3633 0.5448 0.8713 31 1 1.8933 -0.5139 -0.8901 32 1 1.8933 -0.5139 0.8899 33 1 4.1091 1.4352 0.1500 34 1 3.4740 0.6422 -1.3132 35 1 2.4522 3.0965 -1.6956 36 1 4.0823 2.6459 -2.2498 37 1 3.8148 4.8432 -0.8613 38 1 5.1367 3.7352 -0.4383 39 1 4.4791 5.7067 4.8149 40 1 3.2963 6.7492 3.9890 41 1 2.9712 5.0092 4.1763 42 1 5.5413 7.6987 3.6867 43 1 6.8277 6.7183 2.9433 44 1 6.3138 8.2408 2.1775 45 1 5.3697 9.5398 -0.3926 46 1 2.2194 3.6035 3.3441 47 1 2.0901 5.1827 2.5332 48 1 0.6658 4.1212 2.6463 49 1 0.8846 1.7822 1.6632 50 1 2.6191 1.5255 1.9578 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601440054.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:26:53 Heat of formation + Delta-G solvation = -70.811811 kcal Electronic energy + Delta-G solvation = -30571.866767 eV Core-core repulsion = 26760.930927 eV Total energy + Delta-G solvation = -3810.935840 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.50194 -38.54355 -38.00925 -36.96222 -36.81923 -34.65620 -34.33130 -31.93680 -31.08619 -29.60405 -27.63676 -27.20725 -27.00024 -25.58653 -23.06244 -22.65820 -22.15059 -21.46376 -19.53590 -18.63632 -18.37498 -18.01535 -17.61740 -16.87692 -16.77159 -16.49022 -16.07675 -15.74127 -15.22336 -15.11975 -14.69526 -14.61104 -14.36614 -14.21028 -13.85886 -13.83032 -13.55394 -13.42340 -13.32961 -13.25600 -13.12093 -12.93465 -12.87460 -12.70179 -12.63887 -12.56777 -12.41040 -12.20588 -12.16536 -12.12419 -11.96660 -11.80586 -11.60786 -11.53002 -11.37510 -11.16857 -10.46634 -9.92149 -9.62438 -9.12451 -8.09016 -6.20022 -0.29078 1.45820 1.48894 1.56902 1.95980 2.46764 2.51738 2.93924 3.21441 3.40455 3.68999 3.86445 3.98176 4.11170 4.14133 4.19223 4.32019 4.40069 4.47948 4.57329 4.57934 4.68168 4.68826 4.72095 4.74274 4.77360 4.82848 4.90116 4.95615 4.98327 5.04918 5.09042 5.12039 5.14125 5.17173 5.21924 5.25550 5.32144 5.44503 5.49673 5.57058 5.66902 5.81344 5.89367 6.10024 6.28816 6.29649 6.45491 6.88551 7.48563 8.97682 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.014582 B = 0.004889 C = 0.004480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1919.711674 B = 5725.943200 C = 6248.399724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.053 3.947 3 N -0.564 5.564 4 C 0.073 3.927 5 C -0.113 4.113 6 C 0.112 3.888 7 N -0.988 5.988 8 S 2.787 3.213 9 O -0.999 6.999 10 O -1.026 7.026 11 N -0.997 5.997 12 C 0.086 3.914 13 C 0.282 3.718 14 H 0.017 0.983 15 C -0.136 4.136 16 C -0.521 4.521 17 H 0.070 0.930 18 C 0.022 3.978 19 N -0.918 5.918 20 Si 0.953 3.047 21 H -0.280 1.280 22 H -0.291 1.291 23 H -0.265 1.265 24 C 0.162 3.838 25 H 0.095 0.905 26 C -0.226 4.226 27 C 0.066 3.934 28 H 0.059 0.941 29 H 0.069 0.931 30 H 0.051 0.949 31 H 0.083 0.917 32 H 0.028 0.972 33 H 0.011 0.989 34 H 0.094 0.906 35 H 0.085 0.915 36 H 0.097 0.903 37 H 0.058 0.942 38 H 0.070 0.930 39 H 0.047 0.953 40 H 0.080 0.920 41 H 0.086 0.914 42 H 0.049 0.951 43 H 0.018 0.982 44 H 0.057 0.943 45 H 0.262 0.738 46 H 0.089 0.911 47 H 0.074 0.926 48 H 0.104 0.896 49 H 0.101 0.899 50 H 0.012 0.988 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.791 -13.591 -0.394 16.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.073 4.073 3 N -0.288 5.288 4 C -0.054 4.054 5 C -0.152 4.152 6 C -0.013 4.013 7 N -0.828 5.828 8 S 2.799 3.201 9 O -0.983 6.983 10 O -1.010 7.010 11 N -0.838 5.838 12 C -0.059 4.059 13 C 0.178 3.822 14 H 0.035 0.965 15 C -0.196 4.196 16 C -0.561 4.561 17 H 0.088 0.912 18 C -0.178 4.178 19 N -0.557 5.557 20 Si 0.779 3.221 21 H -0.206 1.206 22 H -0.217 1.217 23 H -0.189 1.189 24 C 0.055 3.945 25 H 0.113 0.887 26 C -0.284 4.284 27 C -0.064 4.064 28 H 0.078 0.922 29 H 0.088 0.912 30 H 0.070 0.930 31 H 0.102 0.898 32 H 0.046 0.954 33 H 0.030 0.970 34 H 0.113 0.887 35 H 0.103 0.897 36 H 0.115 0.885 37 H 0.077 0.923 38 H 0.088 0.912 39 H 0.065 0.935 40 H 0.099 0.901 41 H 0.105 0.895 42 H 0.068 0.932 43 H 0.037 0.963 44 H 0.076 0.924 45 H 0.072 0.928 46 H 0.107 0.893 47 H 0.093 0.907 48 H 0.123 0.877 49 H 0.119 0.881 50 H 0.030 0.970 Dipole moment (debyes) X Y Z Total from point charges -9.370 -13.890 -0.427 16.760 hybrid contribution 0.295 1.014 0.147 1.066 sum -9.075 -12.876 -0.281 15.755 Atomic orbital electron populations 1.21760 0.93927 1.01961 1.02249 1.22198 0.96998 0.87162 1.00984 1.58371 1.26214 1.19254 1.24975 1.21604 0.88042 0.98653 0.97138 1.21778 1.02664 0.93354 0.97420 1.21785 0.98146 1.00290 0.81114 1.57471 1.19982 1.86271 1.19086 1.01557 0.72639 0.73155 0.72730 1.93466 1.81440 1.66372 1.57033 1.93488 1.39736 1.87269 1.80485 1.57658 1.72330 1.23647 1.30204 1.21692 0.97339 1.03809 0.83097 1.18265 0.92410 0.83708 0.87837 0.96488 1.21907 0.97506 1.00359 0.99823 1.21542 0.95508 1.09371 1.29642 0.91229 1.25609 0.97418 0.99680 0.95125 1.70069 1.24086 1.30204 1.31332 0.85626 0.80062 0.79485 0.76892 1.20588 1.21673 1.18929 1.20909 0.80552 0.94538 0.98486 0.88702 1.23195 1.05940 1.02082 0.97187 1.21771 1.01761 0.93985 0.88921 0.92152 0.91161 0.93000 0.89826 0.95395 0.97025 0.88749 0.89661 0.88506 0.92329 0.91184 0.93455 0.90130 0.89531 0.93221 0.96325 0.92368 0.92840 0.89281 0.90719 0.87683 0.88095 0.96964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.13 10.03 71.98 0.72 -1.41 16 2 C 0.05 0.97 5.76 86.30 0.50 1.47 16 3 N -0.56 -13.08 3.78 -911.51 -3.44 -16.52 16 4 C 0.07 1.77 5.32 85.89 0.46 2.23 16 5 C -0.11 -2.79 5.79 30.32 0.18 -2.61 16 6 C 0.11 3.74 6.28 86.44 0.54 4.28 16 7 N -0.99 -34.33 2.49 -489.66 -1.22 -35.55 16 8 S 2.79 113.69 5.19 -56.49 -0.29 113.39 16 9 O -1.00 -39.87 12.99 -128.00 -1.66 -41.53 16 10 O -1.03 -49.10 15.63 -128.00 -2.00 -51.10 16 11 N -1.00 -41.29 2.38 -520.46 -1.24 -42.52 16 12 C 0.09 2.97 7.82 127.77 1.00 3.97 16 13 C 0.28 13.69 2.47 44.24 0.11 13.79 16 14 H 0.02 0.95 7.45 -2.39 -0.02 0.93 16 15 C -0.14 -6.50 9.12 71.98 0.66 -5.84 16 16 C -0.52 -25.82 7.98 25.60 0.20 -25.62 16 17 H 0.07 3.31 7.09 -2.91 -0.02 3.29 16 18 C 0.02 1.11 5.20 84.65 0.44 1.55 16 19 N -0.92 -50.29 11.92 21.45 0.26 -50.03 16 20 Si 0.95 40.81 29.54 68.60 2.03 42.84 16 21 H -0.28 -11.86 7.11 99.48 0.71 -11.16 16 22 H -0.29 -12.54 7.11 99.48 0.71 -11.83 16 23 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 24 C 0.16 4.71 2.60 45.90 0.12 4.83 16 25 H 0.09 2.67 8.11 -2.39 -0.02 2.65 16 26 C -0.23 -6.31 6.85 71.98 0.49 -5.82 16 27 C 0.07 1.72 4.45 87.90 0.39 2.11 16 28 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.05 0.82 6.69 -2.39 -0.02 0.80 16 31 H 0.08 1.30 7.30 -2.38 -0.02 1.28 16 32 H 0.03 0.54 7.98 -2.39 -0.02 0.52 16 33 H 0.01 0.34 7.32 -2.39 -0.02 0.32 16 34 H 0.09 1.79 7.22 -2.38 -0.02 1.77 16 35 H 0.08 2.05 7.98 -2.39 -0.02 2.03 16 36 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16 37 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 38 H 0.07 2.59 6.59 -2.39 -0.02 2.57 16 39 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 40 H 0.08 2.77 6.99 -2.39 -0.02 2.75 16 41 H 0.09 2.63 4.53 -2.39 -0.01 2.62 16 42 H 0.05 2.15 7.54 -2.39 -0.02 2.13 16 43 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 44 H 0.06 3.01 6.57 -2.39 -0.02 3.00 16 45 H 0.26 13.78 8.31 -92.71 -0.77 13.01 16 46 H 0.09 2.67 4.50 -2.38 -0.01 2.66 16 47 H 0.07 2.37 5.26 -2.38 -0.01 2.35 16 48 H 0.10 2.25 8.14 -2.39 -0.02 2.23 16 49 H 0.10 2.19 6.43 -2.39 -0.02 2.17 16 50 H 0.01 0.38 7.23 -2.39 -0.02 0.36 16 Total: -1.00 -62.83 372.99 -0.85 -63.67 By element: Atomic # 1 Polarization: 23.50 SS G_CDS: 0.92 Total: 24.42 kcal Atomic # 6 Polarization: -12.87 SS G_CDS: 5.81 Total: -7.06 kcal Atomic # 7 Polarization: -138.98 SS G_CDS: -5.64 Total: -144.63 kcal Atomic # 8 Polarization: -88.97 SS G_CDS: -3.66 Total: -92.63 kcal Atomic # 14 Polarization: 40.81 SS G_CDS: 2.03 Total: 42.84 kcal Atomic # 16 Polarization: 113.69 SS G_CDS: -0.29 Total: 113.39 kcal Total: -62.83 -0.85 -63.67 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601440054.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.137 kcal (2) G-P(sol) polarization free energy of solvation -62.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds