Wall clock time and date at job start Tue Mar 31 2020 17:27:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46901 * 109.47325 * 2 1 4 4 C 1.46194 * 111.00349 * 207.30892 * 3 2 1 5 5 C 1.51214 * 109.09628 * 144.76254 * 4 3 2 6 6 C 1.53802 * 109.63181 * 92.42954 * 5 4 3 7 7 N 1.47612 * 111.30072 * 319.93241 * 6 5 4 8 8 S 1.65595 * 118.74869 * 138.31649 * 7 6 5 9 9 O 1.42101 * 106.40501 * 202.04399 * 8 7 6 10 10 O 1.42096 * 106.40241 * 334.96658 * 8 7 6 11 11 N 1.65601 * 107.21967 * 88.50394 * 8 7 6 12 12 C 1.46496 * 120.00125 * 282.77973 * 11 8 7 13 13 C 1.46503 * 120.00048 * 102.77054 * 11 8 7 14 14 H 1.09006 * 109.46577 * 0.02562 * 13 11 8 15 15 C 1.53000 * 109.46879 * 120.00101 * 13 11 8 16 16 C 1.50698 * 109.47329 * 240.00750 * 13 11 8 17 17 H 1.07999 * 120.00344 * 359.97438 * 16 13 11 18 18 C 1.37882 * 119.99847 * 180.02562 * 16 13 11 19 19 N 1.31509 * 119.99825 * 179.97438 * 18 16 13 20 20 Si 1.86801 * 119.99995 * 0.02562 * 18 16 13 21 21 H 1.48497 * 109.47226 * 89.99905 * 20 18 16 22 22 H 1.48499 * 109.46756 * 210.00108 * 20 18 16 23 23 H 1.48502 * 109.47166 * 329.99495 * 20 18 16 24 24 C 1.44893 * 122.50433 * 318.34156 * 7 6 5 25 25 H 1.09002 * 109.43267 * 329.63601 * 24 7 6 26 26 C 1.53003 * 109.39825 * 209.74286 * 24 7 6 27 27 C 1.41447 * 110.99797 * 76.27241 * 3 2 1 28 28 H 1.09006 * 109.47049 * 181.61614 * 1 2 3 29 29 H 1.09001 * 109.47446 * 301.61665 * 1 2 3 30 30 H 1.09005 * 109.47122 * 61.62180 * 1 2 3 31 31 H 1.08998 * 109.47424 * 239.99873 * 2 1 3 32 32 H 1.09004 * 109.47075 * 120.00027 * 2 1 3 33 33 H 1.08997 * 109.53883 * 264.65543 * 4 3 2 34 34 H 1.09007 * 109.52966 * 24.88362 * 4 3 2 35 35 H 1.09002 * 109.46819 * 332.36876 * 5 4 3 36 36 H 1.09000 * 109.39682 * 212.44815 * 5 4 3 37 37 H 1.09002 * 109.11287 * 199.46861 * 6 5 4 38 38 H 1.08996 * 109.06490 * 80.36792 * 6 5 4 39 39 H 1.08996 * 109.47759 * 94.92188 * 12 11 8 40 40 H 1.09007 * 109.46917 * 214.92643 * 12 11 8 41 41 H 1.08997 * 109.46942 * 334.92307 * 12 11 8 42 42 H 1.09004 * 109.47069 * 180.02562 * 15 13 11 43 43 H 1.08996 * 109.47478 * 300.00273 * 15 13 11 44 44 H 1.08998 * 109.46770 * 60.00750 * 15 13 11 45 45 H 0.97000 * 119.99802 * 180.02562 * 19 18 16 46 46 H 1.08995 * 109.47228 * 282.26766 * 26 24 7 47 47 H 1.09005 * 109.46953 * 42.26582 * 26 24 7 48 48 H 1.08999 * 109.46763 * 162.25504 * 26 24 7 49 49 H 1.08998 * 109.39123 * 311.84444 * 27 3 2 50 50 H 1.09000 * 109.38524 * 71.53318 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.3377 1.4747 -0.6262 5 6 3.4399 2.7823 -1.3787 6 6 4.0524 3.8576 -0.4654 7 7 3.5303 3.7527 0.9113 8 16 4.5811 3.9372 2.1778 9 8 3.9786 3.2990 3.2954 10 8 5.8680 3.5902 1.6853 11 7 4.6377 5.5529 2.5364 12 6 5.4146 6.4638 1.6922 13 6 3.9107 6.0714 3.6979 14 1 3.3958 5.2520 4.1995 15 6 4.8980 6.7230 4.6682 16 6 2.9028 7.0954 3.2435 17 1 2.8130 7.3364 2.1946 18 6 2.0960 7.7256 4.1671 19 7 1.2168 8.6196 3.7707 20 14 2.2528 7.3105 5.9817 21 1 3.2527 8.2103 6.6107 22 1 0.9371 7.4910 6.6461 23 1 2.6931 5.9001 6.1306 24 6 2.1336 3.4939 1.1967 25 1 1.5171 3.9139 0.4020 26 6 1.7583 4.1442 2.5299 27 6 1.8932 1.9673 1.2828 28 1 -0.3633 -1.0273 0.0290 29 1 -0.3634 0.5387 0.8751 30 1 -0.3633 0.4885 -0.9042 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5139 0.8900 33 1 4.1097 1.4351 0.1422 34 1 3.4690 0.6440 -1.3196 35 1 2.4457 3.0982 -1.6948 36 1 4.0734 2.6470 -2.2553 37 1 3.8123 4.8433 -0.8639 38 1 5.1352 3.7343 -0.4468 39 1 4.7600 6.9166 0.9476 40 1 5.8561 7.2451 2.3110 41 1 6.2061 5.9076 1.1899 42 1 4.3572 7.1084 5.5326 43 1 5.6270 5.9823 4.9969 44 1 5.4132 7.5422 4.1667 45 1 0.6494 9.0632 4.4205 46 1 2.1283 3.5300 3.3507 47 1 2.2054 5.1366 2.5885 48 1 0.6739 4.2296 2.5999 49 1 0.8909 1.7801 1.6680 50 1 2.6266 1.5230 1.9557 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601440057.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:27:00 Heat of formation + Delta-G solvation = -40.749408 kcal Electronic energy + Delta-G solvation = -30631.937062 eV Core-core repulsion = 26822.304826 eV Total energy + Delta-G solvation = -3809.632237 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.41447 -37.13399 -36.46258 -35.80145 -35.32003 -33.31557 -32.55357 -30.99932 -30.03850 -28.41606 -26.61521 -25.74194 -25.09934 -24.41382 -21.95442 -21.15983 -20.79416 -20.44789 -18.03809 -17.33988 -16.68009 -16.55993 -16.35594 -15.89904 -15.47470 -15.16783 -14.71684 -14.63211 -13.76412 -13.64211 -13.51510 -13.30601 -13.16889 -12.75371 -12.64097 -12.37939 -12.28383 -12.18737 -12.12869 -12.06069 -11.98278 -11.74132 -11.56198 -11.49440 -11.35681 -11.16703 -11.02042 -10.94016 -10.79937 -10.64501 -10.49461 -10.31272 -10.11970 -9.85957 -9.60837 -9.40476 -8.72760 -8.63765 -8.13223 -8.07716 -6.19737 -4.19687 1.14631 3.20923 3.33953 3.34860 3.37226 3.88383 3.97378 4.30836 4.76424 4.80869 4.92142 5.05930 5.10173 5.15371 5.22838 5.32280 5.35185 5.43644 5.51919 5.60851 5.64128 5.68962 5.74366 5.79633 5.90847 5.94941 6.01540 6.07082 6.11483 6.16685 6.20070 6.22645 6.24638 6.33957 6.37408 6.45981 6.52201 6.55888 6.80898 6.86194 7.04100 7.21024 7.23963 7.32054 7.38946 7.50048 7.62169 8.39763 8.83962 9.41170 10.92126 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.015517 B = 0.005056 C = 0.004420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1804.093114 B = 5536.634109 C = 6332.780406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.056 3.944 3 N -0.562 5.562 4 C 0.074 3.926 5 C -0.123 4.123 6 C 0.114 3.886 7 N -0.996 5.996 8 S 2.778 3.222 9 O -0.977 6.977 10 O -1.000 7.000 11 N -0.987 5.987 12 C 0.100 3.900 13 C 0.232 3.768 14 H 0.067 0.933 15 C -0.162 4.162 16 C -0.523 4.523 17 H 0.084 0.916 18 C 0.079 3.921 19 N -0.890 5.890 20 Si 0.873 3.127 21 H -0.277 1.277 22 H -0.294 1.294 23 H -0.260 1.260 24 C 0.168 3.832 25 H 0.086 0.914 26 C -0.237 4.237 27 C 0.059 3.941 28 H 0.053 0.947 29 H 0.056 0.944 30 H 0.061 0.939 31 H 0.068 0.932 32 H 0.033 0.967 33 H 0.038 0.962 34 H 0.068 0.932 35 H 0.081 0.919 36 H 0.074 0.926 37 H 0.064 0.936 38 H 0.085 0.915 39 H 0.051 0.949 40 H 0.072 0.928 41 H 0.059 0.941 42 H 0.049 0.951 43 H 0.032 0.968 44 H 0.059 0.941 45 H 0.266 0.734 46 H 0.099 0.901 47 H 0.117 0.883 48 H 0.067 0.933 49 H 0.084 0.916 50 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.518 -12.201 -8.911 15.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.071 4.071 3 N -0.287 5.287 4 C -0.053 4.053 5 C -0.163 4.163 6 C -0.011 4.011 7 N -0.835 5.835 8 S 2.789 3.211 9 O -0.961 6.961 10 O -0.984 6.984 11 N -0.828 5.828 12 C -0.047 4.047 13 C 0.127 3.873 14 H 0.084 0.916 15 C -0.221 4.221 16 C -0.562 4.562 17 H 0.102 0.898 18 C -0.125 4.125 19 N -0.527 5.527 20 Si 0.703 3.297 21 H -0.204 1.204 22 H -0.221 1.221 23 H -0.185 1.185 24 C 0.061 3.939 25 H 0.104 0.896 26 C -0.295 4.295 27 C -0.071 4.071 28 H 0.072 0.928 29 H 0.075 0.925 30 H 0.080 0.920 31 H 0.087 0.913 32 H 0.051 0.949 33 H 0.056 0.944 34 H 0.086 0.914 35 H 0.099 0.901 36 H 0.092 0.908 37 H 0.083 0.917 38 H 0.103 0.897 39 H 0.069 0.931 40 H 0.091 0.909 41 H 0.077 0.923 42 H 0.068 0.932 43 H 0.051 0.949 44 H 0.078 0.922 45 H 0.076 0.924 46 H 0.117 0.883 47 H 0.135 0.865 48 H 0.086 0.914 49 H 0.102 0.898 50 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 2.601 -12.508 -8.707 15.461 hybrid contribution 0.193 -0.045 1.285 1.300 sum 2.794 -12.553 -7.422 14.849 Atomic orbital electron populations 1.21805 0.95098 1.00968 1.02649 1.22081 0.96133 0.88453 1.00425 1.58336 1.26511 1.17972 1.25859 1.21518 0.88787 0.97691 0.97345 1.21772 1.02333 0.94693 0.97492 1.21694 0.98607 0.99224 0.81618 1.57791 1.20124 1.86564 1.18991 1.01983 0.72645 0.73546 0.72897 1.93525 1.76871 1.74622 1.51104 1.93508 1.39867 1.83287 1.81760 1.57473 1.61863 1.25471 1.37977 1.21276 0.94216 0.94622 0.94553 1.19244 0.89929 0.96107 0.81983 0.91587 1.22462 0.99578 1.00480 0.99556 1.21122 1.17217 1.21564 0.96306 0.89830 1.24872 0.94734 0.94364 0.98491 1.69869 1.22131 1.25963 1.34692 0.87072 0.76551 0.80032 0.86066 1.20375 1.22127 1.18499 1.20802 0.80913 0.93028 0.99121 0.89559 1.23400 1.04029 1.05679 0.96391 1.21888 1.01564 0.95509 0.88184 0.92781 0.92488 0.92032 0.91314 0.94915 0.94410 0.91361 0.90051 0.90760 0.91719 0.89671 0.93063 0.90891 0.92258 0.93234 0.94864 0.92219 0.92420 0.88259 0.86473 0.91372 0.89775 0.95199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 10.03 37.16 0.37 -1.03 16 2 C 0.06 0.60 5.77 -3.83 -0.02 0.58 16 3 N -0.56 -7.10 3.77 -239.53 -0.90 -8.00 16 4 C 0.07 0.89 5.32 -5.11 -0.03 0.87 16 5 C -0.12 -1.38 5.78 -27.21 -0.16 -1.53 16 6 C 0.11 1.52 6.29 -3.02 -0.02 1.50 16 7 N -1.00 -16.18 2.49 -106.10 -0.26 -16.45 16 8 S 2.78 53.33 5.30 -107.50 -0.57 52.76 16 9 O -0.98 -20.75 12.11 -57.17 -0.69 -21.44 16 10 O -1.00 -20.09 15.45 -57.17 -0.88 -20.97 16 11 N -0.99 -19.54 2.87 -115.85 -0.33 -19.87 16 12 C 0.10 1.70 9.98 59.84 0.60 2.30 16 13 C 0.23 5.22 1.22 -69.08 -0.08 5.14 16 14 H 0.07 1.58 4.67 -51.93 -0.24 1.33 16 15 C -0.16 -3.43 8.64 37.16 0.32 -3.11 16 16 C -0.52 -13.19 6.93 -34.44 -0.24 -13.43 16 17 H 0.08 2.27 7.75 -52.49 -0.41 1.86 16 18 C 0.08 2.11 5.45 -17.82 -0.10 2.01 16 19 N -0.89 -25.26 13.96 55.43 0.77 -24.49 16 20 Si 0.87 20.78 24.37 -169.99 -4.14 16.64 16 21 H -0.28 -6.42 6.87 56.52 0.39 -6.04 16 22 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 23 H -0.26 -6.06 6.53 56.52 0.37 -5.69 16 24 C 0.17 2.71 2.61 -67.85 -0.18 2.54 16 25 H 0.09 1.35 8.11 -51.93 -0.42 0.93 16 26 C -0.24 -4.44 7.35 37.16 0.27 -4.17 16 27 C 0.06 0.86 4.41 -5.74 -0.03 0.84 16 28 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.06 0.58 6.71 -51.93 -0.35 0.23 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.07 0.63 7.30 -51.93 -0.38 0.25 16 32 H 0.03 0.36 7.97 -51.93 -0.41 -0.05 16 33 H 0.04 0.53 7.32 -51.93 -0.38 0.15 16 34 H 0.07 0.68 7.22 -51.92 -0.37 0.31 16 35 H 0.08 0.94 7.98 -51.93 -0.41 0.52 16 36 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.09 1.14 6.72 -51.93 -0.35 0.80 16 39 H 0.05 0.85 7.99 -51.93 -0.41 0.43 16 40 H 0.07 1.22 6.45 -51.92 -0.33 0.88 16 41 H 0.06 0.90 7.15 -51.93 -0.37 0.53 16 42 H 0.05 1.09 3.27 -51.93 -0.17 0.92 16 43 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.06 1.19 6.69 -51.93 -0.35 0.84 16 45 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 46 H 0.10 1.98 5.39 -51.93 -0.28 1.70 16 47 H 0.12 2.50 3.14 -51.93 -0.16 2.34 16 48 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 49 H 0.08 1.15 6.45 -51.93 -0.34 0.81 16 50 H 0.03 0.49 7.63 -51.93 -0.40 0.10 16 LS Contribution 363.66 15.07 5.48 5.48 Total: -1.00 -29.66 363.66 -9.08 -38.73 By element: Atomic # 1 Polarization: 13.38 SS G_CDS: -8.26 Total: 5.12 kcal Atomic # 6 Polarization: -8.23 SS G_CDS: 0.72 Total: -7.51 kcal Atomic # 7 Polarization: -68.08 SS G_CDS: -0.73 Total: -68.81 kcal Atomic # 8 Polarization: -40.84 SS G_CDS: -1.58 Total: -42.41 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -4.14 Total: 16.64 kcal Atomic # 16 Polarization: 53.33 SS G_CDS: -0.57 Total: 52.76 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -29.66 -9.08 -38.73 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601440057.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.015 kcal (2) G-P(sol) polarization free energy of solvation -29.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds