Wall clock time and date at job start Tue Mar 31 2020 17:27:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46901 * 109.47325 * 2 1 4 4 C 1.46194 * 111.00349 * 207.30892 * 3 2 1 5 5 C 1.51214 * 109.09628 * 144.76254 * 4 3 2 6 6 C 1.53802 * 109.63181 * 92.42954 * 5 4 3 7 7 N 1.47612 * 111.30072 * 319.93241 * 6 5 4 8 8 S 1.65595 * 118.74869 * 138.31649 * 7 6 5 9 9 O 1.42101 * 106.40501 * 202.04399 * 8 7 6 10 10 O 1.42096 * 106.40241 * 334.96658 * 8 7 6 11 11 N 1.65601 * 107.21967 * 88.50394 * 8 7 6 12 12 C 1.46496 * 120.00125 * 282.77973 * 11 8 7 13 13 C 1.46503 * 120.00048 * 102.77054 * 11 8 7 14 14 H 1.09006 * 109.46577 * 0.02562 * 13 11 8 15 15 C 1.53000 * 109.46879 * 120.00101 * 13 11 8 16 16 C 1.50698 * 109.47329 * 240.00750 * 13 11 8 17 17 H 1.07999 * 120.00344 * 359.97438 * 16 13 11 18 18 C 1.37882 * 119.99847 * 180.02562 * 16 13 11 19 19 N 1.31509 * 119.99825 * 179.97438 * 18 16 13 20 20 Si 1.86801 * 119.99995 * 0.02562 * 18 16 13 21 21 H 1.48497 * 109.47226 * 89.99905 * 20 18 16 22 22 H 1.48499 * 109.46756 * 210.00108 * 20 18 16 23 23 H 1.48502 * 109.47166 * 329.99495 * 20 18 16 24 24 C 1.44893 * 122.50433 * 318.34156 * 7 6 5 25 25 H 1.09002 * 109.43267 * 329.63601 * 24 7 6 26 26 C 1.53003 * 109.39825 * 209.74286 * 24 7 6 27 27 C 1.41447 * 110.99797 * 76.27241 * 3 2 1 28 28 H 1.09006 * 109.47049 * 181.61614 * 1 2 3 29 29 H 1.09001 * 109.47446 * 301.61665 * 1 2 3 30 30 H 1.09005 * 109.47122 * 61.62180 * 1 2 3 31 31 H 1.08998 * 109.47424 * 239.99873 * 2 1 3 32 32 H 1.09004 * 109.47075 * 120.00027 * 2 1 3 33 33 H 1.08997 * 109.53883 * 264.65543 * 4 3 2 34 34 H 1.09007 * 109.52966 * 24.88362 * 4 3 2 35 35 H 1.09002 * 109.46819 * 332.36876 * 5 4 3 36 36 H 1.09000 * 109.39682 * 212.44815 * 5 4 3 37 37 H 1.09002 * 109.11287 * 199.46861 * 6 5 4 38 38 H 1.08996 * 109.06490 * 80.36792 * 6 5 4 39 39 H 1.08996 * 109.47759 * 94.92188 * 12 11 8 40 40 H 1.09007 * 109.46917 * 214.92643 * 12 11 8 41 41 H 1.08997 * 109.46942 * 334.92307 * 12 11 8 42 42 H 1.09004 * 109.47069 * 180.02562 * 15 13 11 43 43 H 1.08996 * 109.47478 * 300.00273 * 15 13 11 44 44 H 1.08998 * 109.46770 * 60.00750 * 15 13 11 45 45 H 0.97000 * 119.99802 * 180.02562 * 19 18 16 46 46 H 1.08995 * 109.47228 * 282.26766 * 26 24 7 47 47 H 1.09005 * 109.46953 * 42.26582 * 26 24 7 48 48 H 1.08999 * 109.46763 * 162.25504 * 26 24 7 49 49 H 1.08998 * 109.39123 * 311.84444 * 27 3 2 50 50 H 1.09000 * 109.38524 * 71.53318 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.3377 1.4747 -0.6262 5 6 3.4399 2.7823 -1.3787 6 6 4.0524 3.8576 -0.4654 7 7 3.5303 3.7527 0.9113 8 16 4.5811 3.9372 2.1778 9 8 3.9786 3.2990 3.2954 10 8 5.8680 3.5902 1.6853 11 7 4.6377 5.5529 2.5364 12 6 5.4146 6.4638 1.6922 13 6 3.9107 6.0714 3.6979 14 1 3.3958 5.2520 4.1995 15 6 4.8980 6.7230 4.6682 16 6 2.9028 7.0954 3.2435 17 1 2.8130 7.3364 2.1946 18 6 2.0960 7.7256 4.1671 19 7 1.2168 8.6196 3.7707 20 14 2.2528 7.3105 5.9817 21 1 3.2527 8.2103 6.6107 22 1 0.9371 7.4910 6.6461 23 1 2.6931 5.9001 6.1306 24 6 2.1336 3.4939 1.1967 25 1 1.5171 3.9139 0.4020 26 6 1.7583 4.1442 2.5299 27 6 1.8932 1.9673 1.2828 28 1 -0.3633 -1.0273 0.0290 29 1 -0.3634 0.5387 0.8751 30 1 -0.3633 0.4885 -0.9042 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5139 0.8900 33 1 4.1097 1.4351 0.1422 34 1 3.4690 0.6440 -1.3196 35 1 2.4457 3.0982 -1.6948 36 1 4.0734 2.6470 -2.2553 37 1 3.8123 4.8433 -0.8639 38 1 5.1352 3.7343 -0.4468 39 1 4.7600 6.9166 0.9476 40 1 5.8561 7.2451 2.3110 41 1 6.2061 5.9076 1.1899 42 1 4.3572 7.1084 5.5326 43 1 5.6270 5.9823 4.9969 44 1 5.4132 7.5422 4.1667 45 1 0.6494 9.0632 4.4205 46 1 2.1283 3.5300 3.3507 47 1 2.2054 5.1366 2.5885 48 1 0.6739 4.2296 2.5999 49 1 0.8909 1.7801 1.6680 50 1 2.6266 1.5230 1.9557 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601440057.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:27:00 Heat of formation + Delta-G solvation = -61.571147 kcal Electronic energy + Delta-G solvation = -30632.839961 eV Core-core repulsion = 26822.304826 eV Total energy + Delta-G solvation = -3810.535135 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.51520 -38.70973 -38.10894 -37.00062 -36.83327 -34.50991 -34.42759 -32.00989 -31.72826 -29.62489 -27.82892 -27.20633 -26.91623 -25.56674 -23.04827 -22.68502 -22.15021 -21.47514 -19.57272 -19.01041 -18.38336 -18.02758 -17.71146 -17.08704 -16.78410 -16.46475 -16.26010 -15.74219 -15.30636 -15.13178 -14.71378 -14.58419 -14.45276 -14.23647 -14.16609 -13.87888 -13.79230 -13.63231 -13.49814 -13.41134 -13.19350 -13.10728 -13.04178 -12.83230 -12.70432 -12.52634 -12.31429 -12.17899 -12.10569 -11.98478 -11.85519 -11.58271 -11.54495 -11.47403 -11.29548 -11.23807 -10.71866 -9.95919 -9.69949 -9.14827 -8.26245 -6.26938 -0.35509 1.30583 1.40409 1.46771 1.91798 2.33215 2.45454 2.92704 3.07942 3.35087 3.66364 3.88874 3.98701 4.02960 4.12813 4.17807 4.32463 4.39619 4.45947 4.47969 4.57896 4.60720 4.61621 4.68952 4.69784 4.71077 4.77141 4.78568 4.83570 4.88325 4.92620 5.03060 5.08315 5.10949 5.13471 5.15403 5.22240 5.33439 5.38251 5.45487 5.49453 5.56714 5.67415 5.77588 5.97294 6.27711 6.37612 6.43348 6.76143 7.36011 8.88707 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.015517 B = 0.005056 C = 0.004420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1804.093114 B = 5536.634109 C = 6332.780406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.054 3.946 3 N -0.564 5.564 4 C 0.069 3.931 5 C -0.115 4.115 6 C 0.104 3.896 7 N -0.992 5.992 8 S 2.784 3.216 9 O -1.001 7.001 10 O -1.009 7.009 11 N -0.993 5.993 12 C 0.095 3.905 13 C 0.235 3.765 14 H 0.053 0.947 15 C -0.164 4.164 16 C -0.502 4.502 17 H 0.057 0.943 18 C 0.034 3.966 19 N -0.933 5.933 20 Si 0.916 3.084 21 H -0.264 1.264 22 H -0.298 1.298 23 H -0.255 1.255 24 C 0.173 3.827 25 H 0.095 0.905 26 C -0.235 4.235 27 C 0.069 3.931 28 H 0.070 0.930 29 H 0.045 0.955 30 H 0.061 0.939 31 H 0.089 0.911 32 H 0.026 0.974 33 H 0.014 0.986 34 H 0.095 0.905 35 H 0.081 0.919 36 H 0.105 0.895 37 H 0.074 0.926 38 H 0.085 0.915 39 H 0.052 0.948 40 H 0.076 0.924 41 H 0.079 0.921 42 H 0.042 0.958 43 H 0.052 0.948 44 H 0.070 0.930 45 H 0.265 0.735 46 H 0.086 0.914 47 H 0.092 0.908 48 H 0.073 0.927 49 H 0.091 0.909 50 H 0.007 0.993 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.179 -13.570 -10.204 17.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.073 4.073 3 N -0.288 5.288 4 C -0.058 4.058 5 C -0.155 4.155 6 C -0.020 4.020 7 N -0.833 5.833 8 S 2.796 3.204 9 O -0.985 6.985 10 O -0.993 6.993 11 N -0.833 5.833 12 C -0.051 4.051 13 C 0.130 3.870 14 H 0.071 0.929 15 C -0.223 4.223 16 C -0.541 4.541 17 H 0.075 0.925 18 C -0.166 4.166 19 N -0.573 5.573 20 Si 0.744 3.256 21 H -0.190 1.190 22 H -0.226 1.226 23 H -0.179 1.179 24 C 0.066 3.934 25 H 0.113 0.887 26 C -0.294 4.294 27 C -0.062 4.062 28 H 0.089 0.911 29 H 0.064 0.936 30 H 0.080 0.920 31 H 0.107 0.893 32 H 0.044 0.956 33 H 0.033 0.967 34 H 0.113 0.887 35 H 0.100 0.900 36 H 0.123 0.877 37 H 0.093 0.907 38 H 0.104 0.896 39 H 0.071 0.929 40 H 0.095 0.905 41 H 0.098 0.902 42 H 0.061 0.939 43 H 0.071 0.929 44 H 0.089 0.911 45 H 0.075 0.925 46 H 0.104 0.896 47 H 0.111 0.889 48 H 0.092 0.908 49 H 0.110 0.890 50 H 0.026 0.974 Dipole moment (debyes) X Y Z Total from point charges 3.298 -13.886 -10.011 17.433 hybrid contribution 0.002 0.323 1.566 1.599 sum 3.300 -13.562 -8.445 16.314 Atomic orbital electron populations 1.21773 0.94293 1.01926 1.02098 1.22198 0.96780 0.87271 1.01066 1.58397 1.26905 1.19184 1.24324 1.21653 0.87700 0.99263 0.97220 1.21774 1.02800 0.93240 0.97681 1.21993 0.98784 1.00875 0.80333 1.57625 1.19645 1.86301 1.19689 1.01678 0.72596 0.73207 0.72934 1.93495 1.77230 1.75111 1.52668 1.93488 1.40629 1.83334 1.81873 1.57459 1.61968 1.26026 1.37870 1.21446 0.94505 0.94705 0.94413 1.19000 0.89994 0.94866 0.83180 0.92896 1.22438 0.99612 1.01303 0.98963 1.21180 1.17115 1.20921 0.94895 0.92464 1.25443 0.94778 0.94556 1.01811 1.69976 1.23684 1.27816 1.35783 0.86364 0.76544 0.80298 0.82400 1.19030 1.22553 1.17913 1.20760 0.80834 0.94095 0.97723 0.88720 1.23295 1.04198 1.04143 0.97728 1.21709 1.01291 0.94213 0.89017 0.91088 0.93620 0.91962 0.89307 0.95597 0.96745 0.88712 0.90007 0.87694 0.90728 0.89643 0.92915 0.90526 0.90212 0.93918 0.92940 0.91143 0.92529 0.89581 0.88946 0.90772 0.89041 0.97450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.42 10.03 71.98 0.72 -1.70 16 2 C 0.05 1.02 5.77 86.30 0.50 1.51 16 3 N -0.56 -13.18 3.77 -911.73 -3.44 -16.63 16 4 C 0.07 1.50 5.32 85.85 0.46 1.95 16 5 C -0.12 -2.25 5.78 30.28 0.18 -2.07 16 6 C 0.10 2.60 6.29 86.44 0.54 3.14 16 7 N -0.99 -31.51 2.49 -489.61 -1.22 -32.73 16 8 S 2.78 105.81 5.30 -56.49 -0.30 105.51 16 9 O -1.00 -42.87 12.11 -128.00 -1.55 -44.42 16 10 O -1.01 -39.53 15.45 -128.00 -1.98 -41.51 16 11 N -0.99 -38.79 2.87 -520.44 -1.49 -40.28 16 12 C 0.09 3.12 9.98 127.77 1.27 4.40 16 13 C 0.24 10.53 1.22 44.24 0.05 10.58 16 14 H 0.05 2.54 4.67 -2.38 -0.01 2.53 16 15 C -0.16 -6.74 8.64 71.98 0.62 -6.12 16 16 C -0.50 -25.57 6.93 25.60 0.18 -25.39 16 17 H 0.06 3.18 7.75 -2.91 -0.02 3.16 16 18 C 0.03 1.81 5.45 84.66 0.46 2.27 16 19 N -0.93 -54.03 13.96 21.45 0.30 -53.74 16 20 Si 0.92 42.73 24.37 68.60 1.67 44.40 16 21 H -0.26 -11.71 6.87 99.48 0.68 -11.03 16 22 H -0.30 -13.98 7.11 99.48 0.71 -13.27 16 23 H -0.25 -11.55 6.53 99.48 0.65 -10.90 16 24 C 0.17 5.50 2.61 45.90 0.12 5.61 16 25 H 0.09 2.86 8.11 -2.39 -0.02 2.84 16 26 C -0.24 -8.96 7.35 71.98 0.53 -8.43 16 27 C 0.07 1.97 4.41 87.90 0.39 2.35 16 28 H 0.07 0.96 8.14 -2.38 -0.02 0.94 16 29 H 0.04 0.87 6.71 -2.39 -0.02 0.85 16 30 H 0.06 1.05 8.14 -2.38 -0.02 1.03 16 31 H 0.09 1.34 7.30 -2.39 -0.02 1.32 16 32 H 0.03 0.53 7.97 -2.38 -0.02 0.51 16 33 H 0.01 0.38 7.32 -2.39 -0.02 0.36 16 34 H 0.09 1.56 7.22 -2.38 -0.02 1.54 16 35 H 0.08 1.63 7.98 -2.39 -0.02 1.61 16 36 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 37 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 38 H 0.09 2.14 6.72 -2.39 -0.02 2.12 16 39 H 0.05 1.70 7.99 -2.39 -0.02 1.68 16 40 H 0.08 2.45 6.45 -2.38 -0.02 2.44 16 41 H 0.08 2.29 7.15 -2.39 -0.02 2.27 16 42 H 0.04 1.80 3.27 -2.38 -0.01 1.80 16 43 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 44 H 0.07 2.70 6.69 -2.39 -0.02 2.68 16 45 H 0.27 14.64 8.31 -92.71 -0.77 13.87 16 46 H 0.09 3.52 5.39 -2.39 -0.01 3.50 16 47 H 0.09 4.02 3.14 -2.38 -0.01 4.01 16 48 H 0.07 2.64 8.14 -2.39 -0.02 2.62 16 49 H 0.09 2.44 6.45 -2.39 -0.02 2.43 16 50 H 0.01 0.25 7.63 -2.39 -0.02 0.23 16 Total: -1.00 -63.98 363.66 -1.14 -65.12 By element: Atomic # 1 Polarization: 25.32 SS G_CDS: 0.85 Total: 26.16 kcal Atomic # 6 Polarization: -17.91 SS G_CDS: 6.02 Total: -11.89 kcal Atomic # 7 Polarization: -137.52 SS G_CDS: -5.85 Total: -143.38 kcal Atomic # 8 Polarization: -82.40 SS G_CDS: -3.53 Total: -85.93 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 1.67 Total: 44.40 kcal Atomic # 16 Polarization: 105.81 SS G_CDS: -0.30 Total: 105.51 kcal Total: -63.98 -1.14 -65.12 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601440057.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.551 kcal (2) G-P(sol) polarization free energy of solvation -63.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds