Wall clock time and date at job start Tue Mar 31 2020 18:15:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86801 * 119.99998 * 2 1 4 4 H 1.48499 * 109.47165 * 0.02562 * 3 2 1 5 5 H 1.48498 * 109.47155 * 239.99836 * 3 2 1 6 6 H 1.48506 * 109.46826 * 120.00178 * 3 2 1 7 7 C 1.38810 * 119.99803 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00100 * 204.34176 * 7 2 1 9 9 N 1.36940 * 120.00019 * 24.34685 * 7 2 1 10 10 C 1.46931 * 120.62955 * 29.01976 * 9 7 2 11 11 C 1.53630 * 108.54020 * 126.37085 * 10 9 7 12 12 C 1.53040 * 109.24096 * 54.85674 * 11 10 9 13 13 N 1.46498 * 109.46365 * 178.49134 * 12 11 10 14 14 C 1.34783 * 119.99648 * 275.07226 * 13 12 11 15 15 O 1.21581 * 119.99918 * 359.97438 * 14 13 12 16 16 N 1.34773 * 119.99648 * 179.97438 * 14 13 12 17 17 C 1.46502 * 120.00091 * 180.02562 * 16 14 13 18 18 H 1.09002 * 109.71089 * 324.38183 * 17 16 14 19 19 C 1.53438 * 109.72420 * 203.71803 * 17 16 14 20 20 C 1.53140 * 109.19404 * 191.77222 * 19 17 16 21 21 C 1.53243 * 109.55622 * 69.43823 * 20 19 17 22 22 N 1.46592 * 108.79664 * 309.42336 * 21 20 19 23 23 N 1.39655 * 127.54539 * 197.33629 * 22 21 20 24 24 C 1.31029 * 108.12376 * 179.86558 * 23 22 21 25 25 C 1.40062 * 108.25217 * 0.03960 * 24 23 22 26 26 C 1.34747 * 107.80369 * 0.02562 * 25 24 23 27 27 C 1.53041 * 109.53848 * 298.51216 * 12 11 10 28 28 C 1.46927 * 120.63079 * 209.30756 * 9 7 2 29 29 H 0.96995 * 120.00246 * 185.77787 * 1 2 3 30 30 H 1.08990 * 109.58604 * 246.20225 * 10 9 7 31 31 H 1.09003 * 109.58604 * 6.63289 * 10 9 7 32 32 H 1.09003 * 109.63284 * 294.86742 * 11 10 9 33 33 H 1.08998 * 109.43227 * 174.72194 * 11 10 9 34 34 H 1.09007 * 109.44802 * 58.52280 * 12 11 10 35 35 H 0.96997 * 120.00106 * 95.06473 * 13 12 11 36 36 H 0.96997 * 120.00107 * 359.97438 * 16 14 13 37 37 H 1.09001 * 109.51384 * 311.68990 * 19 17 16 38 38 H 1.09007 * 109.51457 * 71.85683 * 19 17 16 39 39 H 1.08993 * 109.45888 * 309.40857 * 20 19 17 40 40 H 1.09007 * 109.44415 * 189.45403 * 20 19 17 41 41 H 1.09005 * 109.58367 * 189.63243 * 21 20 19 42 42 H 1.09002 * 109.58800 * 69.22135 * 21 20 19 43 43 H 1.07996 * 125.87336 * 180.02562 * 24 23 22 44 44 H 1.08005 * 126.09633 * 180.02562 * 25 24 23 45 45 H 1.09002 * 109.50003 * 301.41194 * 27 12 11 46 46 H 1.09003 * 109.50168 * 181.31613 * 27 12 11 47 47 H 1.09000 * 109.58078 * 353.36597 * 28 9 7 48 48 H 1.08997 * 109.58583 * 113.65443 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2853 2.7465 0.0006 5 1 3.1040 1.6964 -1.2125 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0182 -1.2436 0.3861 9 7 1.4169 -2.3356 -0.4879 10 6 0.3966 -2.2517 -1.5419 11 6 0.8145 -3.1699 -2.7005 12 6 1.0488 -4.5839 -2.1640 13 7 1.4126 -5.4719 -3.2710 14 6 0.4494 -6.0513 -4.0146 15 8 -0.7215 -5.8374 -3.7665 16 7 0.7841 -6.8678 -5.0333 17 6 -0.2628 -7.4972 -5.8421 18 1 -1.1157 -7.7458 -5.2104 19 6 0.2855 -8.7710 -6.4985 20 6 -0.7048 -9.2561 -7.5612 21 6 -0.7119 -8.2776 -8.7405 22 7 -0.8921 -6.9173 -8.2245 23 7 -1.2848 -5.7821 -8.9367 24 6 -1.3262 -4.7720 -8.1031 25 6 -0.9592 -5.2358 -6.8335 26 6 -0.6973 -6.5536 -6.9360 27 6 2.1821 -4.5601 -1.1359 28 6 1.7838 -3.6581 0.0365 29 1 -0.4850 -0.8357 0.0846 30 1 -0.5659 -2.5744 -1.1452 31 1 0.3218 -1.2239 -1.8971 32 1 1.7332 -2.7951 -3.1517 33 1 0.0231 -3.1915 -3.4496 34 1 0.1369 -4.9483 -1.6909 35 1 2.3467 -5.6428 -3.4687 36 1 1.7182 -7.0381 -5.2315 37 1 1.2456 -8.5549 -6.9671 38 1 0.4148 -9.5443 -5.7412 39 1 -1.7038 -9.3106 -7.1286 40 1 -0.4063 -10.2444 -7.9112 41 1 -1.5320 -8.5241 -9.4149 42 1 0.2357 -8.3430 -9.2753 43 1 -1.5964 -3.7565 -8.3522 44 1 -0.8973 -4.6429 -5.9328 45 1 3.0880 -4.1723 -1.6019 46 1 2.3642 -5.5711 -0.7715 47 1 2.6246 -3.5585 0.7230 48 1 0.9328 -4.0920 0.5614 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601572572.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:15:06 Heat of formation + Delta-G solvation = 66.590475 kcal Electronic energy + Delta-G solvation = -29237.439937 eV Core-core repulsion = 25329.311107 eV Total energy + Delta-G solvation = -3908.128830 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.72557 -39.96269 -37.82195 -36.92238 -34.76004 -34.39160 -32.34666 -31.12841 -30.43416 -30.03460 -29.11682 -27.98041 -24.99738 -24.07059 -22.67822 -22.41759 -21.94473 -21.15102 -20.65151 -19.52789 -19.35683 -18.09967 -17.38983 -17.11578 -16.67157 -15.69826 -15.06299 -14.90003 -14.80564 -14.56640 -14.38244 -14.21544 -14.04591 -13.70421 -13.56172 -13.49374 -13.27068 -12.87127 -12.79346 -12.47242 -12.32447 -11.91625 -11.64917 -11.60920 -11.51250 -11.28368 -10.78639 -10.71777 -10.62907 -10.43004 -10.20751 -10.08468 -9.96793 -9.91400 -9.42072 -9.32881 -9.26878 -8.66090 -8.58016 -8.33931 -6.86159 -6.03535 -3.22084 1.69985 2.28331 2.63311 2.91610 3.28190 3.51221 3.54784 3.73031 3.96062 4.10321 4.12153 4.29907 4.41767 4.61858 4.71112 4.80184 4.86630 5.12006 5.15397 5.20761 5.24505 5.30965 5.35594 5.45669 5.54807 5.56705 5.59775 5.76462 5.76864 5.98244 6.13758 6.15227 6.26834 6.30424 6.30656 6.47100 6.56742 6.64088 6.66296 6.79460 6.83150 6.87522 6.99650 7.12163 7.25465 7.63958 8.03252 8.05627 8.60934 8.68136 9.14510 9.87147 10.32225 11.24739 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.020260 B = 0.002581 C = 0.002374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1381.726030 B =10846.831235 C =11790.451374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C -0.023 4.023 3 Si 1.065 2.935 4 H -0.285 1.285 5 H -0.293 1.293 6 H -0.293 1.293 7 C -0.352 4.352 8 H 0.055 0.945 9 N -0.599 5.599 10 C 0.155 3.845 11 C -0.141 4.141 12 C 0.170 3.830 13 N -0.738 5.738 14 C 0.704 3.296 15 O -0.581 6.581 16 N -0.740 5.740 17 C 0.232 3.768 18 H 0.111 0.889 19 C -0.132 4.132 20 C -0.132 4.132 21 C 0.133 3.867 22 N -0.373 5.373 23 N -0.297 5.297 24 C 0.042 3.958 25 C -0.237 4.237 26 C 0.062 3.938 27 C -0.138 4.138 28 C 0.150 3.850 29 H 0.270 0.730 30 H 0.020 0.980 31 H 0.080 0.920 32 H 0.057 0.943 33 H 0.056 0.944 34 H 0.082 0.918 35 H 0.391 0.609 36 H 0.396 0.604 37 H 0.076 0.924 38 H 0.088 0.912 39 H 0.080 0.920 40 H 0.097 0.903 41 H 0.092 0.908 42 H 0.081 0.919 43 H 0.183 0.817 44 H 0.150 0.850 45 H 0.063 0.937 46 H 0.056 0.944 47 H 0.059 0.941 48 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.797 -21.268 -15.653 26.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.226 4.226 3 Si 0.894 3.106 4 H -0.211 1.211 5 H -0.221 1.221 6 H -0.220 1.220 7 C -0.481 4.481 8 H 0.073 0.927 9 N -0.323 5.323 10 C 0.028 3.972 11 C -0.182 4.182 12 C 0.066 3.934 13 N -0.391 5.391 14 C 0.404 3.596 15 O -0.458 6.458 16 N -0.396 5.396 17 C 0.124 3.876 18 H 0.129 0.871 19 C -0.171 4.171 20 C -0.171 4.171 21 C 0.011 3.989 22 N -0.158 5.158 23 N -0.118 5.118 24 C -0.144 4.144 25 C -0.266 4.266 26 C -0.066 4.066 27 C -0.178 4.178 28 C 0.023 3.977 29 H 0.081 0.919 30 H 0.038 0.962 31 H 0.098 0.902 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.100 0.900 35 H 0.223 0.777 36 H 0.230 0.770 37 H 0.094 0.906 38 H 0.106 0.894 39 H 0.099 0.901 40 H 0.116 0.884 41 H 0.110 0.890 42 H 0.100 0.900 43 H 0.200 0.800 44 H 0.167 0.833 45 H 0.082 0.918 46 H 0.074 0.926 47 H 0.078 0.922 48 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges 1.376 -19.882 -16.710 26.008 hybrid contribution 1.260 -1.484 0.585 2.033 sum 2.636 -21.366 -16.125 26.898 Atomic orbital electron populations 1.70773 1.06603 1.30463 1.47575 1.25877 0.96559 1.01527 0.98629 0.83533 0.74781 0.76109 0.76130 1.21082 1.22074 1.22011 1.19940 0.97061 0.88284 1.42806 0.92722 1.44177 1.46895 1.01482 1.39785 1.21010 0.90512 0.98715 0.86968 1.22525 1.01022 0.94874 0.99759 1.20874 0.98473 0.89087 0.84960 1.45492 1.07951 1.50714 1.34954 1.15972 0.85634 0.78647 0.79334 1.90954 1.16894 1.66002 1.71909 1.45060 1.09032 1.51961 1.33540 1.19273 0.91671 0.88309 0.88330 0.87132 1.21967 0.99452 0.96786 0.98869 1.21906 1.01268 0.98912 0.94988 1.21753 1.03217 0.76831 0.97067 1.48660 1.53545 1.07862 1.05735 1.77241 1.22323 0.91987 1.20296 1.23989 1.00048 0.98639 0.91704 1.21258 1.11800 0.94208 0.99349 1.21465 1.02386 0.96140 0.86581 1.22330 0.97857 0.99698 0.97923 1.20833 0.97860 0.86383 0.92599 0.91915 0.96216 0.90183 0.92451 0.92563 0.90038 0.77656 0.77016 0.90577 0.89381 0.90113 0.88413 0.89006 0.90050 0.80009 0.83268 0.91831 0.92570 0.92241 0.96363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.64 12.45 55.49 0.69 -26.95 16 2 C -0.02 -0.67 4.69 -17.43 -0.08 -0.75 16 3 Si 1.06 25.28 29.98 -169.99 -5.10 20.18 16 4 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 5 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 7 C -0.35 -9.76 9.48 -15.06 -0.14 -9.91 16 8 H 0.06 1.51 7.94 -52.49 -0.42 1.10 16 9 N -0.60 -14.91 2.83 -172.05 -0.49 -15.40 16 10 C 0.15 3.69 4.72 -3.48 -0.02 3.67 16 11 C -0.14 -2.77 5.67 -26.38 -0.15 -2.92 16 12 C 0.17 2.87 2.41 -67.89 -0.16 2.70 16 13 N -0.74 -9.80 5.08 -58.63 -0.30 -10.10 16 14 C 0.70 9.87 7.75 -86.92 -0.67 9.19 16 15 O -0.58 -10.60 14.69 5.29 0.08 -10.53 16 16 N -0.74 -7.31 5.03 -59.51 -0.30 -7.61 16 17 C 0.23 2.22 2.82 -68.77 -0.19 2.03 16 18 H 0.11 1.24 7.61 -51.93 -0.40 0.84 16 19 C -0.13 -0.71 5.46 -26.43 -0.14 -0.86 16 20 C -0.13 -0.59 5.93 -26.53 -0.16 -0.75 16 21 C 0.13 0.89 7.28 -3.87 -0.03 0.87 16 22 N -0.37 -4.23 4.04 -56.95 -0.23 -4.46 16 23 N -0.30 -4.05 12.62 30.70 0.39 -3.66 16 24 C 0.04 0.55 12.03 -17.21 -0.21 0.35 16 25 C -0.24 -3.38 10.09 -40.13 -0.40 -3.78 16 26 C 0.06 0.75 6.28 -82.22 -0.52 0.23 16 27 C -0.14 -2.25 5.55 -26.61 -0.15 -2.39 16 28 C 0.15 3.08 6.51 -3.71 -0.02 3.06 16 29 H 0.27 8.25 6.71 -40.82 -0.27 7.97 16 30 H 0.02 0.49 7.85 -51.93 -0.41 0.08 16 31 H 0.08 2.15 6.38 -51.93 -0.33 1.82 16 32 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 33 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 34 H 0.08 1.56 7.58 -51.93 -0.39 1.16 16 35 H 0.39 4.02 8.62 -40.82 -0.35 3.67 16 36 H 0.40 2.77 8.60 -40.82 -0.35 2.42 16 37 H 0.08 0.36 8.09 -51.93 -0.42 -0.06 16 38 H 0.09 0.36 8.14 -51.93 -0.42 -0.07 16 39 H 0.08 0.41 8.12 -51.93 -0.42 -0.01 16 40 H 0.10 0.19 8.14 -51.92 -0.42 -0.24 16 41 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 42 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.18 1.93 8.06 -52.49 -0.42 1.50 16 44 H 0.15 2.42 6.80 -52.48 -0.36 2.06 16 45 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 46 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 47 H 0.06 1.20 7.93 -51.93 -0.41 0.79 16 48 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 LS Contribution 378.29 15.07 5.70 5.70 Total: -1.00 -35.46 378.29 -10.16 -45.62 By element: Atomic # 1 Polarization: 14.02 SS G_CDS: -7.56 Total: 6.47 kcal Atomic # 6 Polarization: 3.79 SS G_CDS: -3.05 Total: 0.74 kcal Atomic # 7 Polarization: -67.95 SS G_CDS: -0.24 Total: -68.18 kcal Atomic # 8 Polarization: -10.60 SS G_CDS: 0.08 Total: -10.53 kcal Atomic # 14 Polarization: 25.28 SS G_CDS: -5.10 Total: 20.18 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -35.46 -10.16 -45.62 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601572572.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.208 kcal (2) G-P(sol) polarization free energy of solvation -35.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.617 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds