Wall clock time and date at job start Tue Mar 31 2020 18:15:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86801 * 119.99998 * 2 1 4 4 H 1.48499 * 109.47165 * 0.02562 * 3 2 1 5 5 H 1.48498 * 109.47155 * 239.99836 * 3 2 1 6 6 H 1.48506 * 109.46826 * 120.00178 * 3 2 1 7 7 C 1.38810 * 119.99803 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00100 * 204.34176 * 7 2 1 9 9 N 1.36940 * 120.00019 * 24.34685 * 7 2 1 10 10 C 1.46931 * 120.62955 * 29.01976 * 9 7 2 11 11 C 1.53630 * 108.54020 * 126.37085 * 10 9 7 12 12 C 1.53040 * 109.24096 * 54.85674 * 11 10 9 13 13 N 1.46498 * 109.46365 * 178.49134 * 12 11 10 14 14 C 1.34783 * 119.99648 * 275.07226 * 13 12 11 15 15 O 1.21581 * 119.99918 * 359.97438 * 14 13 12 16 16 N 1.34773 * 119.99648 * 179.97438 * 14 13 12 17 17 C 1.46502 * 120.00091 * 180.02562 * 16 14 13 18 18 H 1.09002 * 109.71089 * 324.38183 * 17 16 14 19 19 C 1.53438 * 109.72420 * 203.71803 * 17 16 14 20 20 C 1.53140 * 109.19404 * 191.77222 * 19 17 16 21 21 C 1.53243 * 109.55622 * 69.43823 * 20 19 17 22 22 N 1.46592 * 108.79664 * 309.42336 * 21 20 19 23 23 N 1.39655 * 127.54539 * 197.33629 * 22 21 20 24 24 C 1.31029 * 108.12376 * 179.86558 * 23 22 21 25 25 C 1.40062 * 108.25217 * 0.03960 * 24 23 22 26 26 C 1.34747 * 107.80369 * 0.02562 * 25 24 23 27 27 C 1.53041 * 109.53848 * 298.51216 * 12 11 10 28 28 C 1.46927 * 120.63079 * 209.30756 * 9 7 2 29 29 H 0.96995 * 120.00246 * 185.77787 * 1 2 3 30 30 H 1.08990 * 109.58604 * 246.20225 * 10 9 7 31 31 H 1.09003 * 109.58604 * 6.63289 * 10 9 7 32 32 H 1.09003 * 109.63284 * 294.86742 * 11 10 9 33 33 H 1.08998 * 109.43227 * 174.72194 * 11 10 9 34 34 H 1.09007 * 109.44802 * 58.52280 * 12 11 10 35 35 H 0.96997 * 120.00106 * 95.06473 * 13 12 11 36 36 H 0.96997 * 120.00107 * 359.97438 * 16 14 13 37 37 H 1.09001 * 109.51384 * 311.68990 * 19 17 16 38 38 H 1.09007 * 109.51457 * 71.85683 * 19 17 16 39 39 H 1.08993 * 109.45888 * 309.40857 * 20 19 17 40 40 H 1.09007 * 109.44415 * 189.45403 * 20 19 17 41 41 H 1.09005 * 109.58367 * 189.63243 * 21 20 19 42 42 H 1.09002 * 109.58800 * 69.22135 * 21 20 19 43 43 H 1.07996 * 125.87336 * 180.02562 * 24 23 22 44 44 H 1.08005 * 126.09633 * 180.02562 * 25 24 23 45 45 H 1.09002 * 109.50003 * 301.41194 * 27 12 11 46 46 H 1.09003 * 109.50168 * 181.31613 * 27 12 11 47 47 H 1.09000 * 109.58078 * 353.36597 * 28 9 7 48 48 H 1.08997 * 109.58583 * 113.65443 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2853 2.7465 0.0006 5 1 3.1040 1.6964 -1.2125 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0182 -1.2436 0.3861 9 7 1.4169 -2.3356 -0.4879 10 6 0.3966 -2.2517 -1.5419 11 6 0.8145 -3.1699 -2.7005 12 6 1.0488 -4.5839 -2.1640 13 7 1.4126 -5.4719 -3.2710 14 6 0.4494 -6.0513 -4.0146 15 8 -0.7215 -5.8374 -3.7665 16 7 0.7841 -6.8678 -5.0333 17 6 -0.2628 -7.4972 -5.8421 18 1 -1.1157 -7.7458 -5.2104 19 6 0.2855 -8.7710 -6.4985 20 6 -0.7048 -9.2561 -7.5612 21 6 -0.7119 -8.2776 -8.7405 22 7 -0.8921 -6.9173 -8.2245 23 7 -1.2848 -5.7821 -8.9367 24 6 -1.3262 -4.7720 -8.1031 25 6 -0.9592 -5.2358 -6.8335 26 6 -0.6973 -6.5536 -6.9360 27 6 2.1821 -4.5601 -1.1359 28 6 1.7838 -3.6581 0.0365 29 1 -0.4850 -0.8357 0.0846 30 1 -0.5659 -2.5744 -1.1452 31 1 0.3218 -1.2239 -1.8971 32 1 1.7332 -2.7951 -3.1517 33 1 0.0231 -3.1915 -3.4496 34 1 0.1369 -4.9483 -1.6909 35 1 2.3467 -5.6428 -3.4687 36 1 1.7182 -7.0381 -5.2315 37 1 1.2456 -8.5549 -6.9671 38 1 0.4148 -9.5443 -5.7412 39 1 -1.7038 -9.3106 -7.1286 40 1 -0.4063 -10.2444 -7.9112 41 1 -1.5320 -8.5241 -9.4149 42 1 0.2357 -8.3430 -9.2753 43 1 -1.5964 -3.7565 -8.3522 44 1 -0.8973 -4.6429 -5.9328 45 1 3.0880 -4.1723 -1.6019 46 1 2.3642 -5.5711 -0.7715 47 1 2.6246 -3.5585 0.7230 48 1 0.9328 -4.0920 0.5614 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601572572.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:15:05 Heat of formation + Delta-G solvation = 40.835137 kcal Electronic energy + Delta-G solvation = -29238.556772 eV Core-core repulsion = 25329.311107 eV Total energy + Delta-G solvation = -3909.245665 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.62548 -41.13966 -39.32894 -37.77580 -36.19789 -35.43532 -33.99743 -32.26059 -31.71118 -31.28549 -30.67699 -28.81264 -26.75396 -25.04081 -24.04780 -23.58374 -23.33697 -22.14018 -21.78991 -21.09806 -20.20674 -19.55056 -18.97350 -18.08200 -17.62776 -16.70892 -16.30437 -16.13928 -15.89082 -15.70032 -15.51133 -15.45325 -15.34125 -15.14456 -15.07454 -14.59210 -14.48926 -14.44779 -13.99200 -13.51753 -13.45238 -13.13301 -12.94312 -12.59147 -12.50418 -12.42484 -12.13795 -12.08639 -11.99921 -11.94580 -11.79851 -11.70364 -11.61685 -11.37186 -11.16684 -10.48869 -10.44903 -10.23845 -9.87253 -9.56057 -8.94613 -8.23982 -5.41496 0.75340 1.46971 1.59032 1.65018 1.67508 1.85571 1.87609 2.16796 2.67187 3.18972 3.24052 3.43684 3.52951 3.55337 3.59091 3.80734 3.86244 4.00105 4.06573 4.26041 4.26410 4.30408 4.34651 4.49900 4.50910 4.61440 4.67539 4.70029 4.77019 4.79257 4.89284 4.94317 4.99512 5.01162 5.03635 5.12032 5.16298 5.17569 5.18440 5.41400 5.44415 5.56071 5.63265 5.86284 5.98435 6.06155 6.38781 6.67163 7.05678 7.10659 7.60429 7.77404 8.23428 9.00936 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.020260 B = 0.002581 C = 0.002374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1381.726030 B =10846.831235 C =11790.451374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C -0.080 4.080 3 Si 1.116 2.884 4 H -0.295 1.295 5 H -0.279 1.279 6 H -0.272 1.272 7 C -0.354 4.354 8 H 0.058 0.942 9 N -0.617 5.617 10 C 0.164 3.836 11 C -0.125 4.125 12 C 0.184 3.816 13 N -0.724 5.724 14 C 0.703 3.297 15 O -0.626 6.626 16 N -0.719 5.719 17 C 0.229 3.771 18 H 0.093 0.907 19 C -0.123 4.123 20 C -0.125 4.125 21 C 0.118 3.882 22 N -0.366 5.366 23 N -0.321 5.321 24 C 0.032 3.968 25 C -0.273 4.273 26 C 0.069 3.931 27 C -0.119 4.119 28 C 0.142 3.858 29 H 0.252 0.748 30 H -0.003 1.003 31 H 0.043 0.957 32 H 0.060 0.940 33 H 0.047 0.953 34 H 0.059 0.941 35 H 0.411 0.589 36 H 0.415 0.585 37 H 0.091 0.909 38 H 0.111 0.889 39 H 0.073 0.927 40 H 0.137 0.863 41 H 0.100 0.900 42 H 0.101 0.899 43 H 0.196 0.804 44 H 0.122 0.878 45 H 0.073 0.927 46 H 0.094 0.906 47 H 0.064 0.936 48 H 0.013 0.987 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.597 -24.423 -16.942 30.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.276 4.276 3 Si 0.940 3.060 4 H -0.222 1.222 5 H -0.205 1.205 6 H -0.198 1.198 7 C -0.483 4.483 8 H 0.075 0.925 9 N -0.341 5.341 10 C 0.037 3.963 11 C -0.165 4.165 12 C 0.078 3.922 13 N -0.379 5.379 14 C 0.402 3.598 15 O -0.506 6.506 16 N -0.375 5.375 17 C 0.121 3.879 18 H 0.111 0.889 19 C -0.161 4.161 20 C -0.163 4.163 21 C -0.002 4.002 22 N -0.151 5.151 23 N -0.143 5.143 24 C -0.153 4.153 25 C -0.303 4.303 26 C -0.061 4.061 27 C -0.159 4.159 28 C 0.017 3.983 29 H 0.062 0.938 30 H 0.015 0.985 31 H 0.061 0.939 32 H 0.078 0.922 33 H 0.065 0.935 34 H 0.077 0.923 35 H 0.247 0.753 36 H 0.252 0.748 37 H 0.110 0.890 38 H 0.129 0.871 39 H 0.091 0.909 40 H 0.155 0.845 41 H 0.118 0.882 42 H 0.119 0.881 43 H 0.213 0.787 44 H 0.140 0.860 45 H 0.092 0.908 46 H 0.113 0.887 47 H 0.082 0.918 48 H 0.031 0.969 Dipole moment (debyes) X Y Z Total from point charges 4.252 -23.124 -18.048 29.641 hybrid contribution 0.345 -0.606 0.969 1.194 sum 4.597 -23.730 -17.079 29.596 Atomic orbital electron populations 1.70901 1.07776 1.29381 1.50688 1.27290 0.96570 1.05162 0.98542 0.82857 0.73810 0.71920 0.77431 1.22162 1.20481 1.19766 1.20248 0.97090 0.89391 1.41612 0.92467 1.44410 1.46783 1.02614 1.40329 1.20754 0.89798 0.97515 0.88236 1.22289 1.00522 0.96084 0.97636 1.20439 0.98159 0.87627 0.85962 1.45054 1.08981 1.49841 1.34009 1.16130 0.84865 0.78836 0.79923 1.90939 1.19006 1.67491 1.73206 1.44825 1.10297 1.50461 1.31965 1.19505 0.91463 0.89549 0.87360 0.88884 1.21998 0.99954 0.94643 0.99470 1.21969 1.00829 0.99853 0.93662 1.22280 1.04549 0.74821 0.98512 1.49067 1.51928 1.08832 1.05271 1.77168 1.23246 0.92815 1.21045 1.24238 1.00085 0.99530 0.91421 1.21186 1.14686 0.95564 0.98873 1.21771 1.00945 0.95770 0.87589 1.22111 0.97307 1.00691 0.95771 1.21046 0.97744 0.85025 0.94520 0.93787 0.98495 0.93889 0.92172 0.93474 0.92300 0.75284 0.74791 0.89039 0.87057 0.90870 0.84499 0.88219 0.88126 0.78687 0.86008 0.90841 0.88717 0.91777 0.96891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.60 12.45 21.65 0.27 -59.33 16 2 C -0.08 -4.61 4.69 84.86 0.40 -4.22 16 3 Si 1.12 51.52 29.98 68.60 2.06 53.58 16 4 H -0.30 -14.03 7.11 99.48 0.71 -13.33 16 5 H -0.28 -12.08 7.11 99.48 0.71 -11.38 16 6 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 7 C -0.35 -19.85 9.48 84.03 0.80 -19.05 16 8 H 0.06 3.14 7.94 -2.91 -0.02 3.12 16 9 N -0.62 -31.26 2.83 -698.24 -1.98 -33.23 16 10 C 0.16 8.22 4.72 86.51 0.41 8.63 16 11 C -0.12 -5.02 5.67 30.82 0.17 -4.84 16 12 C 0.18 6.07 2.41 45.02 0.11 6.18 16 13 N -0.72 -17.88 5.08 -457.68 -2.33 -20.21 16 14 C 0.70 19.08 7.75 179.05 1.39 20.46 16 15 O -0.63 -23.44 14.69 -3.97 -0.06 -23.49 16 16 N -0.72 -12.73 5.03 -460.45 -2.32 -15.05 16 17 C 0.23 3.99 2.82 44.44 0.13 4.11 16 18 H 0.09 2.02 7.61 -2.39 -0.02 2.00 16 19 C -0.12 -0.81 5.46 30.79 0.17 -0.64 16 20 C -0.12 -0.62 5.93 30.72 0.18 -0.44 16 21 C 0.12 1.23 7.28 86.44 0.63 1.86 16 22 N -0.37 -7.84 4.04 -334.09 -1.35 -9.19 16 23 N -0.32 -8.69 12.62 -56.80 -0.72 -9.41 16 24 C 0.03 0.87 12.03 85.26 1.03 1.90 16 25 C -0.27 -8.14 10.09 21.91 0.22 -7.91 16 26 C 0.07 1.63 6.28 41.28 0.26 1.89 16 27 C -0.12 -3.59 5.55 30.67 0.17 -3.42 16 28 C 0.14 5.74 6.51 86.36 0.56 6.30 16 29 H 0.25 16.34 6.71 -92.71 -0.62 15.72 16 30 H 0.00 -0.16 7.85 -2.39 -0.02 -0.18 16 31 H 0.04 2.45 6.38 -2.39 -0.02 2.43 16 32 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 33 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 34 H 0.06 2.27 7.58 -2.38 -0.02 2.25 16 35 H 0.41 7.03 8.62 -92.71 -0.80 6.23 16 36 H 0.41 4.35 8.60 -92.71 -0.80 3.55 16 37 H 0.09 0.40 8.09 -2.39 -0.02 0.38 16 38 H 0.11 0.33 8.14 -2.38 -0.02 0.31 16 39 H 0.07 0.53 8.12 -2.39 -0.02 0.51 16 40 H 0.14 -0.26 8.14 -2.38 -0.02 -0.28 16 41 H 0.10 0.92 8.14 -2.38 -0.02 0.90 16 42 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 43 H 0.20 4.41 8.06 -2.91 -0.02 4.39 16 44 H 0.12 4.28 6.80 -2.91 -0.02 4.26 16 45 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 46 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 47 H 0.06 2.51 7.93 -2.39 -0.02 2.49 16 48 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 Total: -1.00 -82.90 378.29 -0.26 -83.16 By element: Atomic # 1 Polarization: 22.83 SS G_CDS: -0.47 Total: 22.36 kcal Atomic # 6 Polarization: 4.19 SS G_CDS: 6.62 Total: 10.81 kcal Atomic # 7 Polarization: -138.00 SS G_CDS: -8.41 Total: -146.42 kcal Atomic # 8 Polarization: -23.44 SS G_CDS: -0.06 Total: -23.49 kcal Atomic # 14 Polarization: 51.52 SS G_CDS: 2.06 Total: 53.58 kcal Total: -82.90 -0.26 -83.16 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601572572.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.995 kcal (2) G-P(sol) polarization free energy of solvation -82.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.160 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds