Wall clock time and date at job start Tue Mar 31 2020 18:15:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 119.99663 * 2 1 4 4 H 1.48506 * 109.46812 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47258 * 299.99482 * 3 2 1 6 6 H 1.48499 * 109.47344 * 60.00017 * 3 2 1 7 7 C 1.38806 * 120.00191 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00020 * 163.07870 * 7 2 1 9 9 N 1.36937 * 120.00219 * 343.07619 * 7 2 1 10 10 C 1.46930 * 120.63259 * 331.83653 * 9 7 2 11 11 C 1.53183 * 108.89468 * 233.51494 * 10 9 7 12 12 C 1.53076 * 109.29478 * 305.57480 * 11 10 9 13 13 N 1.46505 * 109.45150 * 181.24130 * 12 11 10 14 14 C 1.34778 * 119.99485 * 84.78885 * 13 12 11 15 15 O 1.21588 * 120.00528 * 0.02562 * 14 13 12 16 16 N 1.34775 * 119.99666 * 179.97438 * 14 13 12 17 17 C 1.46505 * 119.99999 * 180.02562 * 16 14 13 18 18 H 1.08995 * 109.71806 * 35.00772 * 17 16 14 19 19 C 1.53448 * 109.72013 * 155.62118 * 17 16 14 20 20 C 1.53148 * 109.18246 * 168.26830 * 19 17 16 21 21 C 1.53237 * 109.57150 * 290.57348 * 20 19 17 22 22 N 1.46590 * 108.80543 * 50.53977 * 21 20 19 23 23 N 1.39648 * 127.54951 * 162.70908 * 22 21 20 24 24 C 1.31218 * 108.11433 * 180.16431 * 23 22 21 25 25 C 1.40063 * 108.23720 * 359.87468 * 24 23 22 26 26 C 1.34750 * 107.79640 * 0.09537 * 25 24 23 27 27 C 1.53033 * 109.65646 * 61.15632 * 12 11 10 28 28 C 1.46925 * 120.63413 * 151.81378 * 9 7 2 29 29 H 0.96995 * 120.00379 * 0.02562 * 1 2 3 30 30 H 1.09005 * 109.58138 * 353.37071 * 10 9 7 31 31 H 1.08998 * 109.58912 * 113.65314 * 10 9 7 32 32 H 1.09005 * 109.50135 * 65.38839 * 11 10 9 33 33 H 1.09004 * 109.49749 * 185.48051 * 11 10 9 34 34 H 1.08990 * 109.33376 * 301.13470 * 12 11 10 35 35 H 0.96997 * 120.00106 * 264.79224 * 13 12 11 36 36 H 0.97008 * 120.00072 * 0.02562 * 16 14 13 37 37 H 1.08993 * 109.51843 * 288.17587 * 19 17 16 38 38 H 1.08993 * 109.52070 * 48.30060 * 19 17 16 39 39 H 1.09007 * 109.45766 * 50.60495 * 20 19 17 40 40 H 1.08995 * 109.45614 * 170.56122 * 20 19 17 41 41 H 1.09000 * 109.58658 * 170.33793 * 21 20 19 42 42 H 1.09003 * 109.58297 * 290.74636 * 21 20 19 43 43 H 1.08000 * 125.89210 * 179.97438 * 24 23 22 44 44 H 1.08000 * 126.09780 * 180.10508 * 25 24 23 45 45 H 1.09003 * 109.49897 * 178.74799 * 27 12 11 46 46 H 1.09000 * 109.52987 * 58.66451 * 27 12 11 47 47 H 1.09001 * 109.58688 * 246.20238 * 28 9 7 48 48 H 1.08996 * 109.58570 * 6.47946 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0552 -1.2224 -0.2717 9 7 1.3702 -2.3622 0.3463 10 6 0.2263 -2.3400 1.2681 11 6 0.4942 -3.3197 2.4148 12 6 0.8122 -4.7007 1.8363 13 7 1.0399 -5.6476 2.9308 14 6 -0.0050 -6.2695 3.5121 15 8 -1.1365 -6.0453 3.1278 16 7 0.2045 -7.1409 4.5187 17 6 -0.9312 -7.8175 5.1502 18 1 -1.6983 -8.0230 4.4036 19 6 -0.4620 -9.1328 5.7861 20 6 -1.5740 -9.6822 6.6845 21 6 -1.7322 -8.7818 7.9143 22 7 -1.8531 -7.3905 7.4689 23 7 -2.3358 -6.3021 8.1987 24 6 -2.2784 -5.2389 7.4317 25 6 -1.7538 -5.6215 6.1907 26 6 -1.5021 -6.9444 6.2400 27 6 2.0675 -4.6173 0.9650 28 6 1.8138 -3.6528 -0.1979 29 1 -0.4850 0.8400 -0.0004 30 1 0.0995 -1.3342 1.6688 31 1 -0.6774 -2.6380 0.7364 32 1 1.3429 -2.9691 3.0021 33 1 -0.3879 -3.3839 3.0520 34 1 -0.0281 -5.0406 1.2310 35 1 1.9426 -5.8267 3.2372 36 1 1.1073 -7.3202 4.8250 37 1 -0.2363 -9.8560 5.0025 38 1 0.4322 -8.9506 6.3821 39 1 -2.5114 -9.7058 6.1287 40 1 -1.3165 -10.6917 7.0047 41 1 -2.6286 -9.0685 8.4641 42 1 -0.8582 -8.8849 8.5574 43 1 -2.5818 -4.2404 7.7099 44 1 -1.5815 -4.9720 5.3452 45 1 2.3043 -5.6062 0.5724 46 1 2.9029 -4.2538 1.5634 47 1 1.0401 -4.0605 -0.8485 48 1 2.7331 -3.5130 -0.7666 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601572575.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:15:10 Heat of formation + Delta-G solvation = 69.352932 kcal Electronic energy + Delta-G solvation = -29189.216624 eV Core-core repulsion = 25281.207582 eV Total energy + Delta-G solvation = -3908.009041 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.67752 -39.88757 -37.68270 -36.83872 -34.63366 -34.27097 -32.22915 -31.10623 -30.38998 -29.90846 -29.24829 -27.96819 -25.10913 -24.08320 -22.64778 -22.21487 -21.98893 -21.11855 -20.57979 -19.48356 -19.31756 -18.00924 -17.17266 -16.77511 -16.53696 -15.64639 -14.98270 -14.90928 -14.84359 -14.54892 -14.45841 -14.25939 -13.89790 -13.63645 -13.53759 -13.45412 -12.98083 -12.78502 -12.64573 -12.39107 -12.31944 -11.89290 -11.57932 -11.51106 -11.42475 -11.09759 -10.90921 -10.74325 -10.71942 -10.35168 -10.19243 -10.08918 -9.97044 -9.72777 -9.52628 -9.36703 -9.28251 -8.62244 -8.55404 -8.37506 -6.65446 -5.75815 -3.19018 1.72648 2.31135 2.67915 2.95498 3.34781 3.39137 3.46838 3.48786 3.98949 4.13780 4.16877 4.33909 4.46047 4.51633 4.73850 4.82833 4.89661 5.14685 5.18276 5.26198 5.33346 5.38687 5.43264 5.48792 5.59308 5.62676 5.68208 5.79935 5.86597 6.12166 6.17461 6.26618 6.35013 6.39000 6.48319 6.61810 6.66955 6.68689 6.79156 6.89912 6.92446 6.97345 7.10932 7.42991 7.66286 7.72821 7.82617 8.12412 8.47982 8.75136 9.23836 9.87148 10.43864 11.32621 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.020572 B = 0.002560 C = 0.002355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1360.768959 B =10933.666843 C =11884.717593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.002 3.998 3 Si 0.901 3.099 4 H -0.278 1.278 5 H -0.290 1.290 6 H -0.289 1.289 7 C -0.254 4.254 8 H 0.066 0.934 9 N -0.593 5.593 10 C 0.174 3.826 11 C -0.146 4.146 12 C 0.169 3.831 13 N -0.738 5.738 14 C 0.704 3.296 15 O -0.581 6.581 16 N -0.741 5.741 17 C 0.232 3.768 18 H 0.111 0.889 19 C -0.132 4.132 20 C -0.132 4.132 21 C 0.133 3.867 22 N -0.373 5.373 23 N -0.298 5.298 24 C 0.041 3.959 25 C -0.236 4.236 26 C 0.062 3.938 27 C -0.138 4.138 28 C 0.149 3.851 29 H 0.254 0.746 30 H 0.088 0.912 31 H 0.020 0.980 32 H 0.052 0.948 33 H 0.054 0.946 34 H 0.081 0.919 35 H 0.390 0.610 36 H 0.395 0.605 37 H 0.087 0.913 38 H 0.075 0.925 39 H 0.080 0.920 40 H 0.097 0.903 41 H 0.091 0.909 42 H 0.081 0.919 43 H 0.183 0.817 44 H 0.150 0.850 45 H 0.054 0.946 46 H 0.062 0.938 47 H 0.020 0.980 48 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.772 -21.793 14.298 26.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.196 4.196 3 Si 0.731 3.269 4 H -0.203 1.203 5 H -0.217 1.217 6 H -0.216 1.216 7 C -0.383 4.383 8 H 0.083 0.917 9 N -0.315 5.315 10 C 0.047 3.953 11 C -0.186 4.186 12 C 0.065 3.935 13 N -0.391 5.391 14 C 0.404 3.596 15 O -0.457 6.457 16 N -0.397 5.397 17 C 0.124 3.876 18 H 0.129 0.871 19 C -0.171 4.171 20 C -0.171 4.171 21 C 0.012 3.988 22 N -0.158 5.158 23 N -0.120 5.120 24 C -0.144 4.144 25 C -0.265 4.265 26 C -0.066 4.066 27 C -0.178 4.178 28 C 0.021 3.979 29 H 0.064 0.936 30 H 0.107 0.893 31 H 0.039 0.961 32 H 0.071 0.929 33 H 0.073 0.927 34 H 0.100 0.900 35 H 0.222 0.778 36 H 0.229 0.771 37 H 0.106 0.894 38 H 0.094 0.906 39 H 0.099 0.901 40 H 0.116 0.884 41 H 0.110 0.890 42 H 0.099 0.901 43 H 0.200 0.800 44 H 0.168 0.832 45 H 0.073 0.927 46 H 0.081 0.919 47 H 0.038 0.962 48 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -0.701 -22.002 15.095 26.691 hybrid contribution 1.445 1.172 -0.313 1.887 sum 0.745 -20.830 14.782 25.552 Atomic orbital electron populations 1.70044 1.05245 1.25424 1.53733 1.25065 0.95279 0.98432 1.00867 0.86247 0.79315 0.84055 0.77273 1.20296 1.21740 1.21572 1.19203 0.92522 0.84790 1.41805 0.91651 1.44114 1.35937 1.01502 1.49992 1.20751 0.88620 0.98095 0.87795 1.22574 1.00451 0.95215 1.00400 1.20921 0.98508 0.88074 0.85960 1.45533 1.07699 1.46770 1.39109 1.15981 0.85407 0.78798 0.79447 1.90957 1.21300 1.67352 1.66137 1.45069 1.09037 1.47758 1.37798 1.19271 0.89027 0.88169 0.91139 0.87098 1.21966 0.98952 0.96178 0.99972 1.21907 1.00295 0.99319 0.95558 1.21748 1.03467 0.76161 0.97465 1.48670 1.50122 1.07580 1.09435 1.77302 1.21534 0.93348 1.19769 1.24033 0.99731 0.98066 0.92598 1.21251 1.10565 0.94638 1.00049 1.21493 1.01561 0.95477 0.88036 1.22334 0.96785 0.99640 0.99052 1.20834 0.97978 0.86767 0.92297 0.93634 0.89349 0.96140 0.92872 0.92719 0.90044 0.77752 0.77058 0.89398 0.90605 0.90112 0.88444 0.89037 0.90073 0.80034 0.83232 0.92701 0.91945 0.96206 0.92387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.39 11.20 55.49 0.62 -25.77 16 2 C 0.00 0.07 4.92 -17.43 -0.09 -0.02 16 3 Si 0.90 21.70 29.59 -169.99 -5.03 16.67 16 4 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 6 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 7 C -0.25 -6.91 9.58 -15.06 -0.14 -7.06 16 8 H 0.07 1.74 7.89 -52.49 -0.41 1.33 16 9 N -0.59 -14.75 3.00 -172.33 -0.52 -15.26 16 10 C 0.17 4.23 5.30 -3.71 -0.02 4.21 16 11 C -0.15 -2.90 5.66 -26.60 -0.15 -3.05 16 12 C 0.17 2.89 2.41 -67.87 -0.16 2.72 16 13 N -0.74 -9.92 5.08 -58.62 -0.30 -10.22 16 14 C 0.70 9.99 7.76 -86.92 -0.67 9.32 16 15 O -0.58 -10.75 14.78 5.29 0.08 -10.67 16 16 N -0.74 -7.43 5.02 -59.50 -0.30 -7.73 16 17 C 0.23 2.25 2.83 -68.77 -0.19 2.06 16 18 H 0.11 1.26 7.59 -51.93 -0.39 0.86 16 19 C -0.13 -0.73 5.47 -26.42 -0.14 -0.87 16 20 C -0.13 -0.61 5.93 -26.53 -0.16 -0.76 16 21 C 0.13 0.91 7.28 -3.87 -0.03 0.88 16 22 N -0.37 -4.26 4.04 -56.94 -0.23 -4.49 16 23 N -0.30 -4.08 12.63 30.73 0.39 -3.70 16 24 C 0.04 0.55 12.04 -17.13 -0.21 0.34 16 25 C -0.24 -3.38 10.12 -40.13 -0.41 -3.79 16 26 C 0.06 0.76 6.29 -82.19 -0.52 0.24 16 27 C -0.14 -2.24 5.55 -26.62 -0.15 -2.39 16 28 C 0.15 3.02 6.52 -3.71 -0.02 3.00 16 29 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 30 H 0.09 2.41 6.06 -51.93 -0.31 2.10 16 31 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 33 H 0.05 1.11 8.14 -51.93 -0.42 0.68 16 34 H 0.08 1.58 7.58 -51.93 -0.39 1.19 16 35 H 0.39 4.06 8.62 -40.82 -0.35 3.71 16 36 H 0.40 2.83 8.60 -40.82 -0.35 2.48 16 37 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.08 0.37 8.09 -51.93 -0.42 -0.05 16 39 H 0.08 0.42 8.12 -51.93 -0.42 0.00 16 40 H 0.10 0.19 8.14 -51.93 -0.42 -0.23 16 41 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.18 1.93 8.06 -52.49 -0.42 1.51 16 44 H 0.15 2.44 6.88 -52.49 -0.36 2.08 16 45 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 46 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 47 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 48 H 0.06 1.14 7.93 -51.93 -0.41 0.73 16 LS Contribution 379.43 15.07 5.72 5.72 Total: -1.00 -34.75 379.43 -10.25 -45.00 By element: Atomic # 1 Polarization: 13.24 SS G_CDS: -7.62 Total: 5.62 kcal Atomic # 6 Polarization: 7.89 SS G_CDS: -3.06 Total: 4.83 kcal Atomic # 7 Polarization: -66.84 SS G_CDS: -0.33 Total: -67.17 kcal Atomic # 8 Polarization: -10.75 SS G_CDS: 0.08 Total: -10.67 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.03 Total: 16.67 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -34.75 -10.25 -45.00 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601572575.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.352 kcal (2) G-P(sol) polarization free energy of solvation -34.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.999 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds