Wall clock time and date at job start Tue Mar 31 2020 18:15:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 119.99663 * 2 1 4 4 H 1.48506 * 109.46812 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47258 * 299.99482 * 3 2 1 6 6 H 1.48499 * 109.47344 * 60.00017 * 3 2 1 7 7 C 1.38806 * 120.00191 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00020 * 163.07870 * 7 2 1 9 9 N 1.36937 * 120.00219 * 343.07619 * 7 2 1 10 10 C 1.46930 * 120.63259 * 331.83653 * 9 7 2 11 11 C 1.53183 * 108.89468 * 233.51494 * 10 9 7 12 12 C 1.53076 * 109.29478 * 305.57480 * 11 10 9 13 13 N 1.46505 * 109.45150 * 181.24130 * 12 11 10 14 14 C 1.34778 * 119.99485 * 84.78885 * 13 12 11 15 15 O 1.21588 * 120.00528 * 0.02562 * 14 13 12 16 16 N 1.34775 * 119.99666 * 179.97438 * 14 13 12 17 17 C 1.46505 * 119.99999 * 180.02562 * 16 14 13 18 18 H 1.08995 * 109.71806 * 35.00772 * 17 16 14 19 19 C 1.53448 * 109.72013 * 155.62118 * 17 16 14 20 20 C 1.53148 * 109.18246 * 168.26830 * 19 17 16 21 21 C 1.53237 * 109.57150 * 290.57348 * 20 19 17 22 22 N 1.46590 * 108.80543 * 50.53977 * 21 20 19 23 23 N 1.39648 * 127.54951 * 162.70908 * 22 21 20 24 24 C 1.31218 * 108.11433 * 180.16431 * 23 22 21 25 25 C 1.40063 * 108.23720 * 359.87468 * 24 23 22 26 26 C 1.34750 * 107.79640 * 0.09537 * 25 24 23 27 27 C 1.53033 * 109.65646 * 61.15632 * 12 11 10 28 28 C 1.46925 * 120.63413 * 151.81378 * 9 7 2 29 29 H 0.96995 * 120.00379 * 0.02562 * 1 2 3 30 30 H 1.09005 * 109.58138 * 353.37071 * 10 9 7 31 31 H 1.08998 * 109.58912 * 113.65314 * 10 9 7 32 32 H 1.09005 * 109.50135 * 65.38839 * 11 10 9 33 33 H 1.09004 * 109.49749 * 185.48051 * 11 10 9 34 34 H 1.08990 * 109.33376 * 301.13470 * 12 11 10 35 35 H 0.96997 * 120.00106 * 264.79224 * 13 12 11 36 36 H 0.97008 * 120.00072 * 0.02562 * 16 14 13 37 37 H 1.08993 * 109.51843 * 288.17587 * 19 17 16 38 38 H 1.08993 * 109.52070 * 48.30060 * 19 17 16 39 39 H 1.09007 * 109.45766 * 50.60495 * 20 19 17 40 40 H 1.08995 * 109.45614 * 170.56122 * 20 19 17 41 41 H 1.09000 * 109.58658 * 170.33793 * 21 20 19 42 42 H 1.09003 * 109.58297 * 290.74636 * 21 20 19 43 43 H 1.08000 * 125.89210 * 179.97438 * 24 23 22 44 44 H 1.08000 * 126.09780 * 180.10508 * 25 24 23 45 45 H 1.09003 * 109.49897 * 178.74799 * 27 12 11 46 46 H 1.09000 * 109.52987 * 58.66451 * 27 12 11 47 47 H 1.09001 * 109.58688 * 246.20238 * 28 9 7 48 48 H 1.08996 * 109.58570 * 6.47946 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0552 -1.2224 -0.2717 9 7 1.3702 -2.3622 0.3463 10 6 0.2263 -2.3400 1.2681 11 6 0.4942 -3.3197 2.4148 12 6 0.8122 -4.7007 1.8363 13 7 1.0399 -5.6476 2.9308 14 6 -0.0050 -6.2695 3.5121 15 8 -1.1365 -6.0453 3.1278 16 7 0.2045 -7.1409 4.5187 17 6 -0.9312 -7.8175 5.1502 18 1 -1.6983 -8.0230 4.4036 19 6 -0.4620 -9.1328 5.7861 20 6 -1.5740 -9.6822 6.6845 21 6 -1.7322 -8.7818 7.9143 22 7 -1.8531 -7.3905 7.4689 23 7 -2.3358 -6.3021 8.1987 24 6 -2.2784 -5.2389 7.4317 25 6 -1.7538 -5.6215 6.1907 26 6 -1.5021 -6.9444 6.2400 27 6 2.0675 -4.6173 0.9650 28 6 1.8138 -3.6528 -0.1979 29 1 -0.4850 0.8400 -0.0004 30 1 0.0995 -1.3342 1.6688 31 1 -0.6774 -2.6380 0.7364 32 1 1.3429 -2.9691 3.0021 33 1 -0.3879 -3.3839 3.0520 34 1 -0.0281 -5.0406 1.2310 35 1 1.9426 -5.8267 3.2372 36 1 1.1073 -7.3202 4.8250 37 1 -0.2363 -9.8560 5.0025 38 1 0.4322 -8.9506 6.3821 39 1 -2.5114 -9.7058 6.1287 40 1 -1.3165 -10.6917 7.0047 41 1 -2.6286 -9.0685 8.4641 42 1 -0.8582 -8.8849 8.5574 43 1 -2.5818 -4.2404 7.7099 44 1 -1.5815 -4.9720 5.3452 45 1 2.3043 -5.6062 0.5724 46 1 2.9029 -4.2538 1.5634 47 1 1.0401 -4.0605 -0.8485 48 1 2.7331 -3.5130 -0.7666 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601572575.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:15:09 Heat of formation + Delta-G solvation = 44.151271 kcal Electronic energy + Delta-G solvation = -29190.309450 eV Core-core repulsion = 25281.207582 eV Total energy + Delta-G solvation = -3909.101867 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.58608 -41.07259 -39.15170 -37.71725 -35.98907 -35.40018 -33.91355 -32.24996 -31.60443 -31.27142 -30.76343 -28.80514 -26.87136 -25.01621 -23.88081 -23.58649 -23.31651 -22.11115 -21.74001 -21.03874 -20.17762 -19.19837 -18.61426 -18.02297 -17.58640 -16.87335 -16.50579 -16.04366 -15.80872 -15.61971 -15.43249 -15.36669 -15.32390 -15.08815 -14.76908 -14.55577 -14.46562 -14.28564 -14.00109 -13.46594 -13.17397 -13.10378 -13.01312 -12.64433 -12.56515 -12.48865 -12.11937 -12.09997 -12.00256 -11.97104 -11.83663 -11.68579 -11.50078 -11.39325 -11.14439 -10.57958 -10.41082 -10.20745 -9.79395 -9.54310 -8.69576 -7.85970 -5.32393 0.77090 1.47087 1.49093 1.49909 1.59762 1.68353 1.90888 2.21874 2.52474 3.23728 3.31987 3.46181 3.55353 3.61664 3.69510 3.87618 3.92405 4.08376 4.13635 4.28574 4.32159 4.38443 4.50988 4.51708 4.63791 4.70337 4.72354 4.80715 4.83373 4.90284 4.91340 5.01719 5.08090 5.11992 5.14445 5.17111 5.19946 5.35292 5.45809 5.49671 5.63554 5.65687 5.66362 5.72182 6.03118 6.08777 6.40265 6.68663 7.14562 7.16347 7.65836 7.86209 8.38835 9.21097 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.020572 B = 0.002560 C = 0.002355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1360.768959 B =10933.666843 C =11884.717593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.056 4.056 3 Si 0.968 3.032 4 H -0.261 1.261 5 H -0.294 1.294 6 H -0.293 1.293 7 C -0.259 4.259 8 H 0.074 0.926 9 N -0.610 5.610 10 C 0.184 3.816 11 C -0.129 4.129 12 C 0.183 3.817 13 N -0.724 5.724 14 C 0.702 3.298 15 O -0.627 6.627 16 N -0.720 5.720 17 C 0.229 3.771 18 H 0.093 0.907 19 C -0.123 4.123 20 C -0.125 4.125 21 C 0.118 3.882 22 N -0.366 5.366 23 N -0.321 5.321 24 C 0.031 3.969 25 C -0.272 4.272 26 C 0.069 3.931 27 C -0.120 4.120 28 C 0.141 3.859 29 H 0.248 0.752 30 H 0.052 0.948 31 H -0.012 1.012 32 H 0.058 0.942 33 H 0.042 0.958 34 H 0.056 0.944 35 H 0.410 0.590 36 H 0.414 0.586 37 H 0.111 0.889 38 H 0.091 0.909 39 H 0.072 0.928 40 H 0.137 0.863 41 H 0.099 0.901 42 H 0.101 0.899 43 H 0.196 0.804 44 H 0.122 0.878 45 H 0.093 0.907 46 H 0.074 0.926 47 H 0.012 0.988 48 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.518 -25.053 15.599 29.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.251 4.251 3 Si 0.796 3.204 4 H -0.185 1.185 5 H -0.221 1.221 6 H -0.220 1.220 7 C -0.389 4.389 8 H 0.092 0.908 9 N -0.333 5.333 10 C 0.057 3.943 11 C -0.169 4.169 12 C 0.077 3.923 13 N -0.379 5.379 14 C 0.402 3.598 15 O -0.507 6.507 16 N -0.376 5.376 17 C 0.121 3.879 18 H 0.111 0.889 19 C -0.160 4.160 20 C -0.163 4.163 21 C -0.001 4.001 22 N -0.151 5.151 23 N -0.144 5.144 24 C -0.153 4.153 25 C -0.302 4.302 26 C -0.061 4.061 27 C -0.159 4.159 28 C 0.015 3.985 29 H 0.058 0.942 30 H 0.071 0.929 31 H 0.006 0.994 32 H 0.076 0.924 33 H 0.061 0.939 34 H 0.075 0.925 35 H 0.247 0.753 36 H 0.252 0.748 37 H 0.129 0.871 38 H 0.110 0.890 39 H 0.091 0.909 40 H 0.155 0.845 41 H 0.118 0.882 42 H 0.119 0.881 43 H 0.213 0.787 44 H 0.140 0.860 45 H 0.112 0.888 46 H 0.093 0.907 47 H 0.030 0.970 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 2.119 -25.341 16.449 30.286 hybrid contribution 0.539 2.095 -0.716 2.279 sum 2.659 -23.246 15.733 28.195 Atomic orbital electron populations 1.70217 1.06910 1.25735 1.55638 1.25880 0.95995 1.01803 1.01415 0.85198 0.78844 0.79782 0.76573 1.18524 1.22077 1.22035 1.19601 0.93008 0.85786 1.40484 0.90795 1.44362 1.35668 1.02735 1.50550 1.20438 0.87794 0.97234 0.88814 1.22305 1.00062 0.96194 0.98370 1.20482 0.98381 0.86804 0.86624 1.45084 1.08728 1.45804 1.38253 1.16142 0.84611 0.79079 0.79976 1.90941 1.23318 1.68817 1.67654 1.44826 1.10320 1.46257 1.36199 1.19499 0.88635 0.89695 0.90081 0.88910 1.21995 0.99616 0.93717 1.00722 1.21968 0.99721 1.00482 0.94146 1.22276 1.04798 0.73921 0.99142 1.49076 1.48534 1.08692 1.08787 1.77228 1.22466 0.94057 1.20604 1.24283 0.99742 0.98949 0.92335 1.21175 1.13290 0.95840 0.99885 1.21790 1.00370 0.95050 0.88869 1.22120 0.96164 1.00403 0.97226 1.21057 0.97893 0.85565 0.94011 0.94245 0.92947 0.99414 0.92359 0.93898 0.92549 0.75324 0.74816 0.87094 0.89040 0.90883 0.84517 0.88236 0.88126 0.78688 0.86009 0.88849 0.90707 0.97037 0.91352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.45 11.20 21.65 0.24 -57.21 16 2 C -0.06 -3.18 4.92 84.86 0.42 -2.76 16 3 Si 0.97 45.37 29.59 68.60 2.03 47.39 16 4 H -0.26 -11.40 7.11 99.48 0.71 -10.69 16 5 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 6 H -0.29 -13.83 7.11 99.48 0.71 -13.13 16 7 C -0.26 -14.20 9.58 84.03 0.81 -13.39 16 8 H 0.07 3.87 7.89 -2.91 -0.02 3.84 16 9 N -0.61 -30.82 3.00 -699.11 -2.09 -32.91 16 10 C 0.18 9.43 5.30 86.36 0.46 9.88 16 11 C -0.13 -5.26 5.66 30.68 0.17 -5.09 16 12 C 0.18 6.12 2.41 45.03 0.11 6.23 16 13 N -0.72 -18.17 5.08 -457.64 -2.33 -20.49 16 14 C 0.70 19.42 7.76 179.05 1.39 20.81 16 15 O -0.63 -23.91 14.78 -3.99 -0.06 -23.97 16 16 N -0.72 -13.02 5.02 -460.42 -2.31 -15.33 16 17 C 0.23 4.07 2.83 44.45 0.13 4.19 16 18 H 0.09 2.05 7.59 -2.39 -0.02 2.04 16 19 C -0.12 -0.85 5.47 30.79 0.17 -0.68 16 20 C -0.12 -0.65 5.93 30.72 0.18 -0.47 16 21 C 0.12 1.26 7.28 86.44 0.63 1.89 16 22 N -0.37 -7.92 4.04 -334.06 -1.35 -9.26 16 23 N -0.32 -8.76 12.63 -56.69 -0.72 -9.48 16 24 C 0.03 0.86 12.04 85.23 1.03 1.89 16 25 C -0.27 -8.17 10.12 21.91 0.22 -7.95 16 26 C 0.07 1.65 6.29 41.27 0.26 1.91 16 27 C -0.12 -3.58 5.55 30.67 0.17 -3.41 16 28 C 0.14 5.60 6.52 86.36 0.56 6.17 16 29 H 0.25 14.74 8.31 -92.71 -0.77 13.97 16 30 H 0.05 3.04 6.06 -2.38 -0.01 3.03 16 31 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 16 32 H 0.06 2.31 8.14 -2.38 -0.02 2.29 16 33 H 0.04 1.83 8.14 -2.38 -0.02 1.81 16 34 H 0.06 2.22 7.58 -2.39 -0.02 2.20 16 35 H 0.41 7.11 8.62 -92.71 -0.80 6.31 16 36 H 0.41 4.48 8.60 -92.70 -0.80 3.68 16 37 H 0.11 0.36 8.14 -2.39 -0.02 0.34 16 38 H 0.09 0.42 8.09 -2.39 -0.02 0.40 16 39 H 0.07 0.55 8.12 -2.38 -0.02 0.53 16 40 H 0.14 -0.23 8.14 -2.39 -0.02 -0.25 16 41 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 42 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 43 H 0.20 4.44 8.06 -2.91 -0.02 4.42 16 44 H 0.12 4.32 6.88 -2.91 -0.02 4.30 16 45 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 46 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 47 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 48 H 0.07 2.57 7.93 -2.39 -0.02 2.55 16 Total: -1.00 -81.37 379.43 -0.50 -81.87 By element: Atomic # 1 Polarization: 20.79 SS G_CDS: -0.62 Total: 20.17 kcal Atomic # 6 Polarization: 12.52 SS G_CDS: 6.70 Total: 19.22 kcal Atomic # 7 Polarization: -136.14 SS G_CDS: -8.55 Total: -144.69 kcal Atomic # 8 Polarization: -23.91 SS G_CDS: -0.06 Total: -23.97 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 2.03 Total: 47.39 kcal Total: -81.37 -0.50 -81.87 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601572575.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.018 kcal (2) G-P(sol) polarization free energy of solvation -81.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.867 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds