Wall clock time and date at job start Tue Mar 31 2020 17:54:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86797 * 120.00057 * 2 1 4 4 H 1.48504 * 109.47471 * 240.00579 * 3 2 1 5 5 H 1.48501 * 109.47170 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47052 * 120.00466 * 3 2 1 7 7 C 1.37880 * 119.99890 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99724 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00053 * 359.97438 * 7 2 1 10 10 N 1.46905 * 109.46780 * 184.99987 * 9 7 2 11 11 C 1.46895 * 111.00086 * 295.00582 * 10 9 7 12 12 C 1.53237 * 109.36386 * 187.24296 * 11 10 9 13 13 N 1.47087 * 108.51549 * 306.21161 * 12 11 10 14 14 C 1.34776 * 120.85874 * 231.11803 * 13 12 11 15 15 O 1.21585 * 120.00139 * 185.03924 * 14 13 12 16 16 N 1.34781 * 120.00209 * 5.03327 * 14 13 12 17 17 C 1.46499 * 120.00114 * 174.93714 * 16 14 13 18 18 H 1.08994 * 109.42113 * 324.89003 * 17 16 14 19 19 C 1.53020 * 109.42520 * 205.00082 * 17 16 14 20 20 C 1.53382 * 109.72256 * 168.18873 * 19 17 16 21 21 C 1.50886 * 108.19491 * 50.53418 * 20 19 17 22 22 C 1.34564 * 128.32433 * 163.42621 * 21 20 19 23 23 N 1.35207 * 107.61445 * 180.14047 * 22 21 20 24 24 H 0.97000 * 125.99970 * 179.97438 * 23 22 21 25 25 N 1.40311 * 107.99357 * 359.97182 * 23 22 21 26 26 C 1.30132 * 108.12142 * 359.95322 * 25 23 22 27 27 C 1.50946 * 128.28535 * 180.29539 * 26 25 23 28 28 C 1.47079 * 118.25683 * 51.14280 * 13 12 11 29 29 C 1.46893 * 111.00268 * 59.31199 * 10 9 7 30 30 H 0.97003 * 120.00237 * 359.97438 * 1 2 3 31 31 H 1.08991 * 109.47372 * 64.99573 * 9 7 2 32 32 H 1.09004 * 109.46816 * 304.99507 * 9 7 2 33 33 H 1.09002 * 109.49388 * 307.21973 * 11 10 9 34 34 H 1.09002 * 109.49509 * 67.26547 * 11 10 9 35 35 H 1.08997 * 109.62680 * 65.89477 * 12 11 10 36 36 H 1.09005 * 109.62895 * 186.47106 * 12 11 10 37 37 H 0.97001 * 119.99561 * 354.94166 * 16 14 13 38 38 H 1.09003 * 109.43203 * 288.27030 * 19 17 16 39 39 H 1.09010 * 109.42956 * 48.15987 * 19 17 16 40 40 H 1.09000 * 109.72216 * 170.21137 * 20 19 17 41 41 H 1.09003 * 109.71666 * 290.81698 * 20 19 17 42 42 H 1.08000 * 126.19550 * 0.12675 * 22 21 20 43 43 H 1.09009 * 109.71555 * 43.49560 * 27 26 25 44 44 H 1.09003 * 109.71569 * 282.85303 * 27 26 25 45 45 H 1.09000 * 109.62058 * 189.12259 * 28 13 12 46 46 H 1.08997 * 109.63421 * 68.54406 * 28 13 12 47 47 H 1.09006 * 109.49196 * 292.70277 * 29 10 9 48 48 H 1.09004 * 109.49387 * 52.75200 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6963 1.2124 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 7 2.2011 -3.6131 0.1196 11 6 3.0749 -3.6891 -1.0588 12 6 3.9237 -4.9625 -0.9807 13 7 4.6216 -4.9800 0.3140 14 6 5.9525 -5.1818 0.3791 15 8 6.4996 -5.2847 1.4601 16 7 6.6772 -5.2696 -0.7539 17 6 8.1365 -5.3775 -0.6836 18 1 8.5035 -4.7874 0.1561 19 6 8.7490 -4.8498 -1.9828 20 6 10.2639 -4.6825 -1.8104 21 6 10.8188 -5.9680 -1.2479 22 6 12.0986 -6.3830 -1.2205 23 7 12.1227 -7.5958 -0.6235 24 1 12.9114 -8.1378 -0.4653 25 7 10.8065 -7.9326 -0.2729 26 6 10.0269 -6.9593 -0.6447 27 6 8.5303 -6.8463 -0.4843 28 6 3.8288 -4.7722 1.5352 29 6 2.9843 -3.5059 1.3577 30 1 -0.4850 0.8400 0.0004 31 1 0.6928 -2.5965 -0.9316 32 1 0.5592 -2.5193 0.8416 33 1 2.4658 -3.7128 -1.9624 34 1 3.7286 -2.8172 -1.0837 35 1 3.2789 -5.8377 -1.0605 36 1 4.6532 -4.9666 -1.7906 37 1 6.2324 -5.2612 -1.6159 38 1 8.5516 -5.5557 -2.7897 39 1 8.3039 -3.8854 -2.2280 40 1 10.7234 -4.4753 -2.7768 41 1 10.4673 -3.8615 -1.1229 42 1 12.9519 -5.8448 -1.6059 43 1 8.2420 -7.1719 0.5153 44 1 8.0326 -7.4651 -1.2310 45 1 4.4960 -4.6506 2.3885 46 1 3.1746 -5.6288 1.6975 47 1 3.6396 -2.6368 1.2994 48 1 2.3094 -3.3963 2.2066 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601585282.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:54:54 Heat of formation + Delta-G solvation = 56.318501 kcal Electronic energy + Delta-G solvation = -28911.136503 eV Core-core repulsion = 25002.562246 eV Total energy + Delta-G solvation = -3908.574256 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.72012 -40.19429 -37.97795 -36.77017 -34.40916 -33.57936 -32.40923 -32.23056 -30.69618 -29.65254 -28.72492 -27.87298 -25.39289 -24.40301 -23.12878 -22.46531 -21.79829 -21.27229 -20.54006 -19.44513 -18.97782 -17.94022 -17.64936 -16.44276 -16.34082 -15.50477 -15.25206 -15.11561 -14.75547 -14.43379 -14.39310 -14.12790 -13.91893 -13.80223 -13.68681 -13.48266 -13.11206 -13.05860 -12.66739 -12.23137 -12.15791 -11.85375 -11.75705 -11.49630 -11.16505 -11.14901 -11.01587 -10.93868 -10.67607 -10.61194 -10.56529 -10.23008 -9.99201 -9.81835 -9.65056 -9.61162 -9.11370 -8.69638 -8.47002 -8.26804 -7.25144 -6.06792 -4.16260 1.63793 2.48241 2.54198 2.82265 3.26181 3.31537 3.34111 3.39408 3.94470 4.28243 4.37449 4.47097 4.58792 4.79604 4.90772 4.92602 5.06706 5.22104 5.23357 5.30243 5.33891 5.38245 5.48634 5.52536 5.54611 5.67403 5.76844 5.81185 5.85736 5.91685 5.93375 6.00981 6.07746 6.16018 6.39307 6.42323 6.56665 6.59462 6.74152 6.78460 7.01330 7.15341 7.20546 7.43043 7.47158 7.84665 7.95274 8.11830 8.19630 8.23761 8.77947 8.93415 9.50998 10.98206 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.019001 B = 0.002467 C = 0.002298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1473.250045 B =11347.881992 C =12181.343711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.066 3.934 3 Si 0.889 3.111 4 H -0.277 1.277 5 H -0.286 1.286 6 H -0.277 1.277 7 C -0.551 4.551 8 H 0.055 0.945 9 C 0.188 3.812 10 N -0.540 5.540 11 C 0.049 3.951 12 C 0.116 3.884 13 N -0.623 5.623 14 C 0.708 3.292 15 O -0.595 6.595 16 N -0.746 5.746 17 C 0.172 3.828 18 H 0.091 0.909 19 C -0.126 4.126 20 C -0.035 4.035 21 C -0.239 4.239 22 C 0.060 3.940 23 N -0.487 5.487 24 H 0.438 0.562 25 N -0.288 5.288 26 C 0.093 3.907 27 C -0.051 4.051 28 C 0.133 3.867 29 C 0.050 3.950 30 H 0.263 0.737 31 H 0.029 0.971 32 H 0.036 0.964 33 H 0.077 0.923 34 H 0.042 0.958 35 H 0.071 0.929 36 H 0.069 0.931 37 H 0.396 0.604 38 H 0.071 0.929 39 H 0.078 0.922 40 H 0.075 0.925 41 H 0.073 0.927 42 H 0.176 0.824 43 H 0.090 0.910 44 H 0.085 0.915 45 H 0.087 0.913 46 H 0.065 0.935 47 H 0.043 0.957 48 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.999 -12.897 -6.511 25.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.137 4.137 3 Si 0.717 3.283 4 H -0.203 1.203 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.590 4.590 8 H 0.073 0.927 9 C 0.062 3.938 10 N -0.264 5.264 11 C -0.081 4.081 12 C -0.008 4.008 13 N -0.360 5.360 14 C 0.410 3.590 15 O -0.474 6.474 16 N -0.403 5.403 17 C 0.066 3.934 18 H 0.109 0.891 19 C -0.165 4.165 20 C -0.074 4.074 21 C -0.250 4.250 22 C -0.086 4.086 23 N -0.195 5.195 24 H 0.282 0.718 25 N -0.110 5.110 26 C -0.077 4.077 27 C -0.091 4.091 28 C 0.010 3.990 29 C -0.079 4.079 30 H 0.073 0.927 31 H 0.047 0.953 32 H 0.054 0.946 33 H 0.095 0.905 34 H 0.060 0.940 35 H 0.089 0.911 36 H 0.087 0.913 37 H 0.233 0.767 38 H 0.089 0.911 39 H 0.096 0.904 40 H 0.093 0.907 41 H 0.092 0.908 42 H 0.193 0.807 43 H 0.109 0.891 44 H 0.103 0.897 45 H 0.105 0.895 46 H 0.084 0.916 47 H 0.061 0.939 48 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 21.002 -14.396 -5.131 25.974 hybrid contribution 1.162 2.308 -0.866 2.726 sum 22.164 -12.087 -5.998 25.948 Atomic orbital electron populations 1.69923 1.05991 1.27010 1.49886 1.24953 0.94765 0.99142 0.94842 0.86710 0.79694 0.83293 0.78649 1.20301 1.21177 1.20242 1.21688 0.93204 0.92100 1.52025 0.92678 1.19766 0.90733 0.85333 0.97948 1.62473 1.16893 1.46568 1.00466 1.22233 0.95433 0.95042 0.95400 1.21837 0.95107 0.99861 0.83988 1.47357 1.05126 1.74965 1.08543 1.15833 0.81309 0.77664 0.84203 1.90889 1.70483 1.58636 1.27362 1.45311 1.06575 1.80474 1.07929 1.20669 0.78749 0.94899 0.99115 0.89096 1.21851 0.95525 1.02165 0.96912 1.19917 0.93879 0.93179 1.00423 1.20152 0.92355 1.00669 1.11861 1.22055 0.98975 0.88430 0.99091 1.46345 1.08015 1.16207 1.48954 0.71820 1.77052 0.87558 1.23202 1.23217 1.22262 0.96615 0.91963 0.96850 1.20559 0.86671 0.97854 1.04060 1.21718 0.93054 0.98215 0.85975 1.22265 0.96031 0.95247 0.94349 0.92704 0.95339 0.94559 0.90497 0.94012 0.91055 0.91299 0.76727 0.91074 0.90363 0.90662 0.90808 0.80720 0.89108 0.89718 0.89485 0.91643 0.93871 0.90320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.61 13.29 55.43 0.74 -24.88 16 2 C 0.07 1.81 5.46 -17.82 -0.10 1.72 16 3 Si 0.89 21.15 29.54 -169.99 -5.02 16.13 16 4 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 5 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.55 -14.68 7.75 -34.44 -0.27 -14.95 16 8 H 0.06 1.47 5.88 -52.49 -0.31 1.17 16 9 C 0.19 4.62 5.11 -4.97 -0.03 4.60 16 10 N -0.54 -10.89 4.83 -235.77 -1.14 -12.03 16 11 C 0.05 0.84 5.24 -3.70 -0.02 0.83 16 12 C 0.12 1.56 6.59 -3.60 -0.02 1.54 16 13 N -0.62 -9.66 3.01 -178.19 -0.54 -10.20 16 14 C 0.71 11.16 8.26 -86.91 -0.72 10.44 16 15 O -0.59 -11.41 15.54 5.29 0.08 -11.33 16 16 N -0.75 -8.76 4.99 -58.48 -0.29 -9.05 16 17 C 0.17 1.86 2.35 -67.73 -0.16 1.70 16 18 H 0.09 1.20 7.61 -51.93 -0.40 0.80 16 19 C -0.13 -1.00 5.33 -26.52 -0.14 -1.14 16 20 C -0.04 -0.26 6.28 -27.59 -0.17 -0.43 16 21 C -0.24 -2.19 5.89 -104.98 -0.62 -2.81 16 22 C 0.06 0.44 11.95 -17.36 -0.21 0.23 16 23 N -0.49 -4.00 7.37 30.35 0.22 -3.77 16 24 H 0.44 2.10 8.96 -182.44 -1.64 0.47 16 25 N -0.29 -3.47 12.68 33.75 0.43 -3.04 16 26 C 0.09 1.06 7.10 -82.35 -0.58 0.47 16 27 C -0.05 -0.57 5.88 -27.57 -0.16 -0.73 16 28 C 0.13 2.20 6.58 -3.60 -0.02 2.18 16 29 C 0.05 0.97 5.15 -3.71 -0.02 0.95 16 30 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 31 H 0.03 0.74 8.06 -51.93 -0.42 0.32 16 32 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.08 1.30 8.05 -51.93 -0.42 0.88 16 34 H 0.04 0.82 6.92 -51.93 -0.36 0.46 16 35 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 36 H 0.07 0.71 5.64 -51.93 -0.29 0.42 16 37 H 0.40 3.74 6.10 -40.82 -0.25 3.49 16 38 H 0.07 0.50 8.10 -51.93 -0.42 0.08 16 39 H 0.08 0.59 8.14 -51.92 -0.42 0.17 16 40 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.18 0.58 8.06 -52.49 -0.42 0.16 16 43 H 0.09 1.22 8.14 -51.92 -0.42 0.80 16 44 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 45 H 0.09 1.48 7.10 -51.93 -0.37 1.11 16 46 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 47 H 0.04 0.93 6.79 -51.93 -0.35 0.58 16 48 H 0.08 1.51 8.11 -51.93 -0.42 1.09 16 LS Contribution 376.34 15.07 5.67 5.67 Total: -1.00 -33.83 376.34 -11.67 -45.50 By element: Atomic # 1 Polarization: 10.99 SS G_CDS: -8.58 Total: 2.41 kcal Atomic # 6 Polarization: 7.82 SS G_CDS: -3.24 Total: 4.58 kcal Atomic # 7 Polarization: -62.38 SS G_CDS: -0.58 Total: -62.96 kcal Atomic # 8 Polarization: -11.41 SS G_CDS: 0.08 Total: -11.33 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -33.83 -11.67 -45.50 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601585282.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.818 kcal (2) G-P(sol) polarization free energy of solvation -33.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.500 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds