Wall clock time and date at job start Tue Mar 31 2020 17:54:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86797 * 120.00057 * 2 1 4 4 H 1.48504 * 109.47471 * 240.00579 * 3 2 1 5 5 H 1.48501 * 109.47170 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47052 * 120.00466 * 3 2 1 7 7 C 1.37880 * 119.99890 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99724 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00053 * 359.97438 * 7 2 1 10 10 N 1.46905 * 109.46780 * 184.99987 * 9 7 2 11 11 C 1.46895 * 111.00086 * 295.00582 * 10 9 7 12 12 C 1.53237 * 109.36386 * 187.24296 * 11 10 9 13 13 N 1.47087 * 108.51549 * 306.21161 * 12 11 10 14 14 C 1.34776 * 120.85874 * 231.11803 * 13 12 11 15 15 O 1.21585 * 120.00139 * 185.03924 * 14 13 12 16 16 N 1.34781 * 120.00209 * 5.03327 * 14 13 12 17 17 C 1.46499 * 120.00114 * 174.93714 * 16 14 13 18 18 H 1.08994 * 109.42113 * 324.89003 * 17 16 14 19 19 C 1.53020 * 109.42520 * 205.00082 * 17 16 14 20 20 C 1.53382 * 109.72256 * 168.18873 * 19 17 16 21 21 C 1.50886 * 108.19491 * 50.53418 * 20 19 17 22 22 C 1.34564 * 128.32433 * 163.42621 * 21 20 19 23 23 N 1.35207 * 107.61445 * 180.14047 * 22 21 20 24 24 H 0.97000 * 125.99970 * 179.97438 * 23 22 21 25 25 N 1.40311 * 107.99357 * 359.97182 * 23 22 21 26 26 C 1.30132 * 108.12142 * 359.95322 * 25 23 22 27 27 C 1.50946 * 128.28535 * 180.29539 * 26 25 23 28 28 C 1.47079 * 118.25683 * 51.14280 * 13 12 11 29 29 C 1.46893 * 111.00268 * 59.31199 * 10 9 7 30 30 H 0.97003 * 120.00237 * 359.97438 * 1 2 3 31 31 H 1.08991 * 109.47372 * 64.99573 * 9 7 2 32 32 H 1.09004 * 109.46816 * 304.99507 * 9 7 2 33 33 H 1.09002 * 109.49388 * 307.21973 * 11 10 9 34 34 H 1.09002 * 109.49509 * 67.26547 * 11 10 9 35 35 H 1.08997 * 109.62680 * 65.89477 * 12 11 10 36 36 H 1.09005 * 109.62895 * 186.47106 * 12 11 10 37 37 H 0.97001 * 119.99561 * 354.94166 * 16 14 13 38 38 H 1.09003 * 109.43203 * 288.27030 * 19 17 16 39 39 H 1.09010 * 109.42956 * 48.15987 * 19 17 16 40 40 H 1.09000 * 109.72216 * 170.21137 * 20 19 17 41 41 H 1.09003 * 109.71666 * 290.81698 * 20 19 17 42 42 H 1.08000 * 126.19550 * 0.12675 * 22 21 20 43 43 H 1.09009 * 109.71555 * 43.49560 * 27 26 25 44 44 H 1.09003 * 109.71569 * 282.85303 * 27 26 25 45 45 H 1.09000 * 109.62058 * 189.12259 * 28 13 12 46 46 H 1.08997 * 109.63421 * 68.54406 * 28 13 12 47 47 H 1.09006 * 109.49196 * 292.70277 * 29 10 9 48 48 H 1.09004 * 109.49387 * 52.75200 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6963 1.2124 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 7 2.2011 -3.6131 0.1196 11 6 3.0749 -3.6891 -1.0588 12 6 3.9237 -4.9625 -0.9807 13 7 4.6216 -4.9800 0.3140 14 6 5.9525 -5.1818 0.3791 15 8 6.4996 -5.2847 1.4601 16 7 6.6772 -5.2696 -0.7539 17 6 8.1365 -5.3775 -0.6836 18 1 8.5035 -4.7874 0.1561 19 6 8.7490 -4.8498 -1.9828 20 6 10.2639 -4.6825 -1.8104 21 6 10.8188 -5.9680 -1.2479 22 6 12.0986 -6.3830 -1.2205 23 7 12.1227 -7.5958 -0.6235 24 1 12.9114 -8.1378 -0.4653 25 7 10.8065 -7.9326 -0.2729 26 6 10.0269 -6.9593 -0.6447 27 6 8.5303 -6.8463 -0.4843 28 6 3.8288 -4.7722 1.5352 29 6 2.9843 -3.5059 1.3577 30 1 -0.4850 0.8400 0.0004 31 1 0.6928 -2.5965 -0.9316 32 1 0.5592 -2.5193 0.8416 33 1 2.4658 -3.7128 -1.9624 34 1 3.7286 -2.8172 -1.0837 35 1 3.2789 -5.8377 -1.0605 36 1 4.6532 -4.9666 -1.7906 37 1 6.2324 -5.2612 -1.6159 38 1 8.5516 -5.5557 -2.7897 39 1 8.3039 -3.8854 -2.2280 40 1 10.7234 -4.4753 -2.7768 41 1 10.4673 -3.8615 -1.1229 42 1 12.9519 -5.8448 -1.6059 43 1 8.2420 -7.1719 0.5153 44 1 8.0326 -7.4651 -1.2310 45 1 4.4960 -4.6506 2.3885 46 1 3.1746 -5.6288 1.6975 47 1 3.6396 -2.6368 1.2994 48 1 2.3094 -3.3963 2.2066 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601585282.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:54:53 Heat of formation + Delta-G solvation = 31.510236 kcal Electronic energy + Delta-G solvation = -28912.212270 eV Core-core repulsion = 25002.562246 eV Total energy + Delta-G solvation = -3909.650024 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.41435 -41.41471 -39.31603 -37.81993 -35.97975 -34.68244 -34.10919 -33.07219 -32.00564 -30.62528 -29.60834 -29.33767 -27.11180 -25.31756 -24.47783 -24.03948 -22.75717 -21.96246 -21.91356 -20.58612 -19.96729 -19.08463 -18.40292 -18.27622 -17.52673 -16.81289 -16.57307 -16.13210 -16.04362 -15.92007 -15.51076 -15.34396 -15.15469 -15.06625 -14.61252 -14.52010 -14.39721 -13.92923 -13.74706 -13.60460 -13.51983 -13.02434 -12.93783 -12.87957 -12.53176 -12.49630 -12.44137 -12.22336 -12.13016 -11.90286 -11.82666 -11.77513 -11.62685 -11.34546 -11.11403 -10.59795 -10.38222 -10.22463 -9.56213 -9.32288 -8.99936 -8.15197 -6.34312 0.99304 1.36687 1.38137 1.45881 1.60687 1.77485 2.02026 2.17532 2.37089 2.90047 3.09817 3.34265 3.56064 3.78409 3.92682 4.03987 4.10550 4.16039 4.23726 4.31977 4.36024 4.41025 4.50026 4.57042 4.65035 4.66949 4.71414 4.80908 4.88260 4.91984 4.98502 5.03061 5.09817 5.21593 5.22211 5.24321 5.26341 5.34389 5.36999 5.51457 5.55807 5.73236 5.74421 5.95557 6.06204 6.24403 6.49848 6.51656 6.74007 6.85570 6.99596 7.36992 7.57430 8.86646 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.019001 B = 0.002467 C = 0.002298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1473.250045 B =11347.881992 C =12181.343711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.014 3.986 3 Si 0.952 3.048 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.276 1.276 7 C -0.555 4.555 8 H 0.051 0.949 9 C 0.200 3.800 10 N -0.536 5.536 11 C 0.048 3.952 12 C 0.125 3.875 13 N -0.627 5.627 14 C 0.705 3.295 15 O -0.634 6.634 16 N -0.728 5.728 17 C 0.176 3.824 18 H 0.062 0.938 19 C -0.119 4.119 20 C -0.031 4.031 21 C -0.260 4.260 22 C 0.077 3.923 23 N -0.480 5.480 24 H 0.451 0.549 25 N -0.334 5.334 26 C 0.072 3.928 27 C -0.044 4.044 28 C 0.145 3.855 29 C 0.058 3.942 30 H 0.265 0.735 31 H 0.012 0.988 32 H 0.008 0.992 33 H 0.084 0.916 34 H 0.019 0.981 35 H 0.089 0.911 36 H 0.108 0.892 37 H 0.410 0.590 38 H 0.086 0.914 39 H 0.086 0.914 40 H 0.101 0.899 41 H 0.071 0.929 42 H 0.220 0.780 43 H 0.058 0.942 44 H 0.095 0.905 45 H 0.080 0.920 46 H 0.081 0.919 47 H 0.015 0.985 48 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.432 -12.902 -8.716 28.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.186 4.186 3 Si 0.778 3.222 4 H -0.193 1.193 5 H -0.207 1.207 6 H -0.201 1.201 7 C -0.594 4.594 8 H 0.069 0.931 9 C 0.074 3.926 10 N -0.260 5.260 11 C -0.081 4.081 12 C 0.002 3.998 13 N -0.364 5.364 14 C 0.406 3.594 15 O -0.515 6.515 16 N -0.386 5.386 17 C 0.070 3.930 18 H 0.081 0.919 19 C -0.157 4.157 20 C -0.070 4.070 21 C -0.271 4.271 22 C -0.069 4.069 23 N -0.190 5.190 24 H 0.298 0.702 25 N -0.157 5.157 26 C -0.096 4.096 27 C -0.084 4.084 28 C 0.021 3.979 29 C -0.072 4.072 30 H 0.074 0.926 31 H 0.030 0.970 32 H 0.026 0.974 33 H 0.102 0.898 34 H 0.038 0.962 35 H 0.107 0.893 36 H 0.126 0.874 37 H 0.250 0.750 38 H 0.104 0.896 39 H 0.105 0.895 40 H 0.120 0.880 41 H 0.090 0.910 42 H 0.236 0.764 43 H 0.076 0.924 44 H 0.113 0.887 45 H 0.099 0.901 46 H 0.099 0.901 47 H 0.034 0.966 48 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 23.455 -14.428 -7.381 28.509 hybrid contribution 0.469 2.252 -0.163 2.306 sum 23.924 -12.176 -7.544 27.884 Atomic orbital electron populations 1.70036 1.07388 1.27900 1.50929 1.25751 0.95576 1.02607 0.94625 0.85700 0.78485 0.79240 0.78812 1.19277 1.20661 1.20148 1.21905 0.93083 0.93082 1.51342 0.93071 1.19436 0.91089 0.86380 0.95739 1.62406 1.17417 1.44123 1.02018 1.22330 0.95116 0.96371 0.94329 1.21911 0.95610 0.98100 0.84144 1.47389 1.05227 1.74903 1.08857 1.16008 0.81287 0.77474 0.84606 1.90867 1.71175 1.60302 1.29184 1.45188 1.06909 1.79114 1.07369 1.20697 0.77941 0.94365 1.00028 0.91928 1.21830 0.95931 1.02697 0.95205 1.19958 0.93256 0.92165 1.01589 1.20460 0.92920 1.01086 1.12633 1.22737 0.99675 0.87523 0.97012 1.46400 1.07372 1.16855 1.48329 0.70247 1.76955 0.89343 1.24521 1.24913 1.22351 0.96598 0.92952 0.97717 1.20410 0.87504 0.98113 1.02420 1.21498 0.92762 0.97097 0.86543 1.22196 0.95487 0.95758 0.93745 0.92588 0.97004 0.97390 0.89784 0.96223 0.89313 0.87417 0.75036 0.89557 0.89528 0.88040 0.91045 0.76384 0.92380 0.88709 0.90139 0.90087 0.96647 0.91013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.95 13.29 21.45 0.28 -53.67 16 2 C 0.01 0.79 5.46 84.66 0.46 1.25 16 3 Si 0.95 43.51 29.54 68.60 2.03 45.54 16 4 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 5 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 6 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 7 C -0.56 -30.07 7.75 25.60 0.20 -29.87 16 8 H 0.05 2.77 5.88 -2.91 -0.02 2.76 16 9 C 0.20 10.14 5.11 85.56 0.44 10.58 16 10 N -0.54 -21.76 4.83 -899.84 -4.35 -26.10 16 11 C 0.05 1.62 5.24 86.38 0.45 2.07 16 12 C 0.13 3.07 6.59 86.35 0.57 3.64 16 13 N -0.63 -18.75 3.01 -835.93 -2.52 -21.26 16 14 C 0.70 21.78 8.26 179.05 1.48 23.26 16 15 O -0.63 -24.76 15.54 -3.98 -0.06 -24.82 16 16 N -0.73 -16.01 4.99 -457.19 -2.28 -18.29 16 17 C 0.18 3.65 2.35 45.12 0.11 3.76 16 18 H 0.06 1.68 7.61 -2.39 -0.02 1.66 16 19 C -0.12 -1.57 5.33 30.73 0.16 -1.41 16 20 C -0.03 -0.37 6.28 30.03 0.19 -0.18 16 21 C -0.26 -4.22 5.89 -20.10 -0.12 -4.34 16 22 C 0.08 0.88 11.95 83.33 1.00 1.88 16 23 N -0.48 -7.04 7.37 -57.88 -0.43 -7.47 16 24 H 0.45 3.52 8.96 -213.18 -1.91 1.61 16 25 N -0.33 -7.95 12.68 -47.14 -0.60 -8.55 16 26 C 0.07 1.61 7.10 43.44 0.31 1.92 16 27 C -0.04 -0.99 5.88 30.05 0.18 -0.81 16 28 C 0.14 4.74 6.58 86.35 0.57 5.31 16 29 C 0.06 2.25 5.15 86.38 0.44 2.70 16 30 H 0.27 14.68 8.31 -92.71 -0.77 13.91 16 31 H 0.01 0.63 8.06 -2.39 -0.02 0.62 16 32 H 0.01 0.44 8.14 -2.38 -0.02 0.42 16 33 H 0.08 2.72 8.05 -2.39 -0.02 2.70 16 34 H 0.02 0.75 6.92 -2.39 -0.02 0.74 16 35 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 36 H 0.11 1.82 5.64 -2.38 -0.01 1.80 16 37 H 0.41 6.51 6.10 -92.71 -0.57 5.95 16 38 H 0.09 0.92 8.10 -2.39 -0.02 0.90 16 39 H 0.09 1.04 8.14 -2.38 -0.02 1.02 16 40 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 41 H 0.07 0.88 8.14 -2.39 -0.02 0.87 16 42 H 0.22 0.40 8.06 -2.91 -0.02 0.38 16 43 H 0.06 1.66 8.14 -2.38 -0.02 1.64 16 44 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 45 H 0.08 2.77 7.10 -2.39 -0.02 2.76 16 46 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 47 H 0.02 0.68 6.79 -2.38 -0.02 0.66 16 48 H 0.07 2.85 8.11 -2.39 -0.02 2.83 16 Total: -1.00 -76.50 376.34 -2.96 -79.47 By element: Atomic # 1 Polarization: 16.89 SS G_CDS: -1.48 Total: 15.41 kcal Atomic # 6 Polarization: 13.31 SS G_CDS: 6.43 Total: 19.75 kcal Atomic # 7 Polarization: -125.46 SS G_CDS: -9.88 Total: -135.34 kcal Atomic # 8 Polarization: -24.76 SS G_CDS: -0.06 Total: -24.82 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.54 kcal Total: -76.50 -2.96 -79.47 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601585282.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.979 kcal (2) G-P(sol) polarization free energy of solvation -76.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.469 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds