Wall clock time and date at job start Tue Mar 31 2020 17:54:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86804 * 119.99460 * 2 1 4 4 H 1.48506 * 109.47095 * 239.99493 * 3 2 1 5 5 H 1.48499 * 109.47415 * 359.97438 * 3 2 1 6 6 H 1.48508 * 109.46847 * 120.00109 * 3 2 1 7 7 C 1.37875 * 120.00502 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00351 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99686 * 0.02562 * 7 2 1 10 10 N 1.46902 * 109.47236 * 179.97438 * 9 7 2 11 11 C 1.46900 * 110.99666 * 294.30138 * 10 9 7 12 12 C 1.53240 * 109.33989 * 172.74610 * 11 10 9 13 13 N 1.47078 * 108.52233 * 53.82467 * 12 11 10 14 14 C 1.34776 * 120.87773 * 128.79412 * 13 12 11 15 15 O 1.21590 * 119.99892 * 175.02753 * 14 13 12 16 16 N 1.34775 * 120.00584 * 355.02778 * 14 13 12 17 17 C 1.46491 * 120.00603 * 185.07470 * 16 14 13 18 18 H 1.09007 * 109.41974 * 35.11787 * 17 16 14 19 19 C 1.53021 * 109.42703 * 154.99737 * 17 16 14 20 20 C 1.53388 * 109.72871 * 191.79590 * 19 17 16 21 21 C 1.50876 * 108.19671 * 309.46060 * 20 19 17 22 22 C 1.34572 * 128.33223 * 196.61810 * 21 20 19 23 23 N 1.35198 * 107.62121 * 179.90633 * 22 21 20 24 24 H 0.97000 * 126.00456 * 179.97438 * 23 22 21 25 25 N 1.40309 * 107.99210 * 0.02562 * 23 22 21 26 26 C 1.30130 * 108.12553 * 0.04074 * 25 23 22 27 27 C 1.50949 * 128.28729 * 179.80966 * 26 25 23 28 28 C 1.47083 * 118.23767 * 308.82025 * 13 12 11 29 29 C 1.46893 * 111.00586 * 169.99666 * 10 9 7 30 30 H 0.97003 * 120.00928 * 0.02562 * 1 2 3 31 31 H 1.09001 * 109.47146 * 299.99598 * 9 7 2 32 32 H 1.08993 * 109.47778 * 59.99495 * 9 7 2 33 33 H 1.08996 * 109.49409 * 292.70026 * 11 10 9 34 34 H 1.09000 * 109.49471 * 52.78490 * 11 10 9 35 35 H 1.09007 * 109.62656 * 294.12018 * 12 11 10 36 36 H 1.08998 * 109.62965 * 173.54070 * 12 11 10 37 37 H 0.97003 * 119.99243 * 5.08121 * 16 14 13 38 38 H 1.08994 * 109.43251 * 311.87872 * 19 17 16 39 39 H 1.09005 * 109.42486 * 71.77274 * 19 17 16 40 40 H 1.09000 * 109.71654 * 69.13824 * 20 19 17 41 41 H 1.09003 * 109.71792 * 189.78575 * 20 19 17 42 42 H 1.08004 * 126.18554 * 359.86340 * 22 21 20 43 43 H 1.08997 * 109.71598 * 77.13475 * 27 26 25 44 44 H 1.08997 * 109.71562 * 316.49181 * 27 26 25 45 45 H 1.08997 * 109.62509 * 291.46830 * 28 13 12 46 46 H 1.09000 * 109.62730 * 170.89495 * 28 13 12 47 47 H 1.09003 * 109.49349 * 307.21618 * 29 10 9 48 48 H 1.08999 * 109.49425 * 67.26090 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2839 2.7465 -0.0006 6 1 3.1027 1.6965 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2058 -3.6157 0.0005 11 6 2.9768 -3.6490 -1.2494 12 6 4.0791 -4.7076 -1.1377 13 7 3.4618 -5.9861 -0.7534 14 6 3.7119 -7.1121 -1.4506 15 8 3.2663 -8.1763 -1.0668 16 7 4.4557 -7.0586 -2.5732 17 6 4.6352 -8.2606 -3.3911 18 1 3.7212 -8.8542 -3.3683 19 6 4.9416 -7.8533 -4.8339 20 6 4.8404 -9.0790 -5.7505 21 6 5.6667 -10.1879 -5.1473 22 6 6.1126 -11.3122 -5.7374 23 7 6.8121 -12.0093 -4.8140 24 1 7.2507 -12.8628 -4.9556 25 7 6.7912 -11.2818 -3.6144 26 6 6.1057 -10.1936 -3.8128 27 6 5.7955 -9.0913 -2.8293 28 6 2.5640 -6.0030 0.4115 29 6 1.5215 -4.8935 0.2387 30 1 -0.4852 0.8400 -0.0004 31 1 0.6242 -2.5567 0.8903 32 1 0.6247 -2.5571 -0.8895 33 1 2.3150 -3.8992 -2.0785 34 1 3.4272 -2.6720 -1.4251 35 1 4.8004 -4.4063 -0.3780 36 1 4.5802 -4.8173 -2.0994 37 1 4.8724 -6.2240 -2.8395 38 1 4.2251 -7.0984 -5.1576 39 1 5.9500 -7.4430 -4.8884 40 1 3.8003 -9.3957 -5.8276 41 1 5.2242 -8.8309 -6.7401 42 1 5.9419 -11.6050 -6.7628 43 1 6.6724 -8.4571 -2.6991 44 1 5.5081 -9.5237 -1.8709 45 1 3.1397 -5.8264 1.3200 46 1 2.0635 -6.9693 0.4740 47 1 0.9163 -4.8191 1.1423 48 1 0.8794 -5.1262 -0.6108 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601585285.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:54:57 Heat of formation + Delta-G solvation = 57.246958 kcal Electronic energy + Delta-G solvation = -28631.762450 eV Core-core repulsion = 24723.228454 eV Total energy + Delta-G solvation = -3908.533996 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.74516 -40.24990 -37.99885 -36.79457 -34.38408 -33.62582 -32.46312 -32.29107 -30.78387 -29.67994 -28.75179 -28.00679 -25.55000 -24.38139 -23.27874 -22.29947 -21.71838 -21.29622 -20.65698 -19.49313 -19.02675 -17.95219 -17.66754 -16.53252 -16.32127 -15.53891 -15.30027 -15.17649 -14.72382 -14.47640 -14.39153 -14.15016 -14.06843 -13.82745 -13.63825 -13.52870 -13.27381 -13.10276 -12.75263 -12.30155 -12.21515 -11.92485 -11.78786 -11.52976 -11.27118 -11.13609 -11.03890 -10.94564 -10.73969 -10.62878 -10.60481 -10.53655 -9.94061 -9.83359 -9.64214 -9.29716 -9.15577 -8.72077 -8.48564 -8.30753 -7.31033 -6.06415 -4.08625 1.61649 2.45849 2.51395 2.77406 3.30311 3.33026 3.35310 3.37448 3.89586 4.24978 4.38266 4.44391 4.55433 4.75175 4.83734 4.89068 5.03444 5.18966 5.26266 5.28554 5.31619 5.35063 5.42477 5.46439 5.49480 5.64146 5.68269 5.76582 5.80009 5.82173 5.87987 5.89432 6.01563 6.10659 6.31914 6.36645 6.45904 6.47780 6.52563 6.68653 6.99186 7.09266 7.23313 7.28882 7.40864 7.73595 8.01639 8.04659 8.13688 8.47748 8.71832 8.98288 9.55801 11.04244 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.025282 B = 0.002139 C = 0.002056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1107.241318 B =13087.524122 C =13614.988539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.899 3.101 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.276 1.276 7 C -0.510 4.510 8 H 0.063 0.937 9 C 0.194 3.806 10 N -0.535 5.535 11 C 0.051 3.949 12 C 0.115 3.885 13 N -0.625 5.625 14 C 0.708 3.292 15 O -0.596 6.596 16 N -0.745 5.745 17 C 0.172 3.828 18 H 0.091 0.909 19 C -0.126 4.126 20 C -0.035 4.035 21 C -0.239 4.239 22 C 0.060 3.940 23 N -0.487 5.487 24 H 0.438 0.562 25 N -0.288 5.288 26 C 0.092 3.908 27 C -0.051 4.051 28 C 0.137 3.863 29 C 0.040 3.960 30 H 0.262 0.738 31 H 0.032 0.968 32 H -0.009 1.009 33 H 0.024 0.976 34 H 0.096 0.904 35 H 0.075 0.925 36 H 0.070 0.930 37 H 0.397 0.603 38 H 0.078 0.922 39 H 0.071 0.929 40 H 0.073 0.927 41 H 0.075 0.925 42 H 0.176 0.824 43 H 0.085 0.915 44 H 0.090 0.910 45 H 0.070 0.930 46 H 0.088 0.912 47 H 0.081 0.919 48 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.466 -19.626 -13.304 26.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.146 4.146 3 Si 0.727 3.273 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.201 1.201 7 C -0.548 4.548 8 H 0.081 0.919 9 C 0.069 3.931 10 N -0.260 5.260 11 C -0.079 4.079 12 C -0.008 4.008 13 N -0.362 5.362 14 C 0.410 3.590 15 O -0.475 6.475 16 N -0.403 5.403 17 C 0.066 3.934 18 H 0.109 0.891 19 C -0.165 4.165 20 C -0.074 4.074 21 C -0.251 4.251 22 C -0.085 4.085 23 N -0.195 5.195 24 H 0.282 0.718 25 N -0.110 5.110 26 C -0.077 4.077 27 C -0.092 4.092 28 C 0.014 3.986 29 C -0.089 4.089 30 H 0.072 0.928 31 H 0.050 0.950 32 H 0.009 0.991 33 H 0.043 0.957 34 H 0.114 0.886 35 H 0.094 0.906 36 H 0.088 0.912 37 H 0.233 0.767 38 H 0.096 0.904 39 H 0.090 0.910 40 H 0.092 0.908 41 H 0.094 0.906 42 H 0.193 0.807 43 H 0.103 0.897 44 H 0.109 0.891 45 H 0.088 0.912 46 H 0.106 0.894 47 H 0.099 0.901 48 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 12.933 -20.869 -11.799 27.240 hybrid contribution -0.159 1.209 -1.535 1.960 sum 12.773 -19.661 -13.334 26.972 Atomic orbital electron populations 1.69943 1.06084 1.26964 1.50671 1.24998 0.94866 0.99346 0.95393 0.86555 0.79420 0.82739 0.78629 1.20290 1.21401 1.20136 1.21094 0.93404 0.89880 1.50465 0.91865 1.19723 0.90007 0.87167 0.96227 1.62062 1.28093 1.02765 1.33083 1.22318 0.95143 0.98914 0.91490 1.21867 0.96261 0.83156 0.99550 1.47394 1.49776 1.07207 1.31801 1.15830 0.79157 0.83986 0.80029 1.90891 1.57936 1.28143 1.70482 1.45319 1.55870 1.13167 1.25912 1.20673 0.98443 0.85566 0.88742 0.89107 1.21851 1.02825 0.98288 0.93493 1.19913 0.98583 0.91160 0.97705 1.20149 1.10498 0.99740 0.94697 1.22057 0.96792 0.93489 0.96199 1.46346 1.44614 1.20675 1.07855 0.71803 1.77055 1.23453 1.06668 1.03815 1.22262 0.96114 0.94514 0.94828 1.20556 0.98986 0.92769 0.96866 1.21622 0.91045 0.99296 0.86674 1.22436 0.95049 0.90578 1.00882 0.92815 0.95009 0.99139 0.95741 0.88579 0.90641 0.91193 0.76653 0.90386 0.91035 0.90836 0.90643 0.80713 0.89680 0.89105 0.91197 0.89391 0.90068 0.95578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.09 13.29 55.43 0.74 -25.35 16 2 C 0.06 1.53 5.46 -17.82 -0.10 1.43 16 3 Si 0.90 20.97 29.54 -169.99 -5.02 15.95 16 4 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 5 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 7 C -0.51 -13.71 8.41 -34.44 -0.29 -14.00 16 8 H 0.06 1.65 7.13 -52.49 -0.37 1.28 16 9 C 0.19 4.87 4.72 -4.97 -0.02 4.84 16 10 N -0.53 -10.93 4.62 -235.78 -1.09 -12.02 16 11 C 0.05 0.89 5.46 -3.70 -0.02 0.87 16 12 C 0.12 1.57 6.59 -3.60 -0.02 1.55 16 13 N -0.62 -9.39 3.01 -178.20 -0.54 -9.93 16 14 C 0.71 10.72 8.26 -86.92 -0.72 10.00 16 15 O -0.60 -10.99 15.54 5.29 0.08 -10.90 16 16 N -0.75 -8.38 4.99 -58.48 -0.29 -8.67 16 17 C 0.17 1.77 2.35 -67.74 -0.16 1.61 16 18 H 0.09 1.13 7.61 -51.93 -0.40 0.74 16 19 C -0.13 -0.93 5.33 -26.52 -0.14 -1.08 16 20 C -0.03 -0.24 6.28 -27.60 -0.17 -0.41 16 21 C -0.24 -2.10 5.89 -104.98 -0.62 -2.72 16 22 C 0.06 0.42 11.95 -17.37 -0.21 0.21 16 23 N -0.49 -3.86 7.37 30.35 0.22 -3.63 16 24 H 0.44 1.99 8.96 -182.44 -1.64 0.36 16 25 N -0.29 -3.39 12.68 33.75 0.43 -2.96 16 26 C 0.09 1.02 7.10 -82.34 -0.58 0.44 16 27 C -0.05 -0.56 5.88 -27.57 -0.16 -0.72 16 28 C 0.14 2.16 6.58 -3.61 -0.02 2.13 16 29 C 0.04 0.71 5.62 -3.71 -0.02 0.69 16 30 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 31 H 0.03 0.86 7.97 -51.93 -0.41 0.45 16 32 H -0.01 -0.25 8.12 -51.93 -0.42 -0.67 16 33 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 34 H 0.10 1.79 6.67 -51.93 -0.35 1.44 16 35 H 0.08 1.03 8.14 -51.92 -0.42 0.61 16 36 H 0.07 0.72 5.63 -51.93 -0.29 0.43 16 37 H 0.40 3.61 6.10 -40.82 -0.25 3.36 16 38 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 39 H 0.07 0.48 8.10 -51.93 -0.42 0.06 16 40 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 42 H 0.18 0.52 8.06 -52.48 -0.42 0.10 16 43 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 44 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 45 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 46 H 0.09 1.39 7.10 -51.93 -0.37 1.03 16 47 H 0.08 1.41 7.99 -51.93 -0.41 0.99 16 48 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 LS Contribution 379.28 15.07 5.72 5.72 Total: -1.00 -34.29 379.28 -11.71 -46.00 By element: Atomic # 1 Polarization: 9.65 SS G_CDS: -8.69 Total: 0.95 kcal Atomic # 6 Polarization: 8.12 SS G_CDS: -3.26 Total: 4.86 kcal Atomic # 7 Polarization: -62.04 SS G_CDS: -0.53 Total: -62.57 kcal Atomic # 8 Polarization: -10.99 SS G_CDS: 0.08 Total: -10.90 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -34.29 -11.71 -46.00 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601585285.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.248 kcal (2) G-P(sol) polarization free energy of solvation -34.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.001 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds