Wall clock time and date at job start Tue Mar 31 2020 17:54:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86804 * 119.99460 * 2 1 4 4 H 1.48506 * 109.47095 * 239.99493 * 3 2 1 5 5 H 1.48499 * 109.47415 * 359.97438 * 3 2 1 6 6 H 1.48508 * 109.46847 * 120.00109 * 3 2 1 7 7 C 1.37875 * 120.00502 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00351 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99686 * 0.02562 * 7 2 1 10 10 N 1.46902 * 109.47236 * 179.97438 * 9 7 2 11 11 C 1.46900 * 110.99666 * 294.30138 * 10 9 7 12 12 C 1.53240 * 109.33989 * 172.74610 * 11 10 9 13 13 N 1.47078 * 108.52233 * 53.82467 * 12 11 10 14 14 C 1.34776 * 120.87773 * 128.79412 * 13 12 11 15 15 O 1.21590 * 119.99892 * 175.02753 * 14 13 12 16 16 N 1.34775 * 120.00584 * 355.02778 * 14 13 12 17 17 C 1.46491 * 120.00603 * 185.07470 * 16 14 13 18 18 H 1.09007 * 109.41974 * 35.11787 * 17 16 14 19 19 C 1.53021 * 109.42703 * 154.99737 * 17 16 14 20 20 C 1.53388 * 109.72871 * 191.79590 * 19 17 16 21 21 C 1.50876 * 108.19671 * 309.46060 * 20 19 17 22 22 C 1.34572 * 128.33223 * 196.61810 * 21 20 19 23 23 N 1.35198 * 107.62121 * 179.90633 * 22 21 20 24 24 H 0.97000 * 126.00456 * 179.97438 * 23 22 21 25 25 N 1.40309 * 107.99210 * 0.02562 * 23 22 21 26 26 C 1.30130 * 108.12553 * 0.04074 * 25 23 22 27 27 C 1.50949 * 128.28729 * 179.80966 * 26 25 23 28 28 C 1.47083 * 118.23767 * 308.82025 * 13 12 11 29 29 C 1.46893 * 111.00586 * 169.99666 * 10 9 7 30 30 H 0.97003 * 120.00928 * 0.02562 * 1 2 3 31 31 H 1.09001 * 109.47146 * 299.99598 * 9 7 2 32 32 H 1.08993 * 109.47778 * 59.99495 * 9 7 2 33 33 H 1.08996 * 109.49409 * 292.70026 * 11 10 9 34 34 H 1.09000 * 109.49471 * 52.78490 * 11 10 9 35 35 H 1.09007 * 109.62656 * 294.12018 * 12 11 10 36 36 H 1.08998 * 109.62965 * 173.54070 * 12 11 10 37 37 H 0.97003 * 119.99243 * 5.08121 * 16 14 13 38 38 H 1.08994 * 109.43251 * 311.87872 * 19 17 16 39 39 H 1.09005 * 109.42486 * 71.77274 * 19 17 16 40 40 H 1.09000 * 109.71654 * 69.13824 * 20 19 17 41 41 H 1.09003 * 109.71792 * 189.78575 * 20 19 17 42 42 H 1.08004 * 126.18554 * 359.86340 * 22 21 20 43 43 H 1.08997 * 109.71598 * 77.13475 * 27 26 25 44 44 H 1.08997 * 109.71562 * 316.49181 * 27 26 25 45 45 H 1.08997 * 109.62509 * 291.46830 * 28 13 12 46 46 H 1.09000 * 109.62730 * 170.89495 * 28 13 12 47 47 H 1.09003 * 109.49349 * 307.21618 * 29 10 9 48 48 H 1.08999 * 109.49425 * 67.26090 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2839 2.7465 -0.0006 6 1 3.1027 1.6965 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2058 -3.6157 0.0005 11 6 2.9768 -3.6490 -1.2494 12 6 4.0791 -4.7076 -1.1377 13 7 3.4618 -5.9861 -0.7534 14 6 3.7119 -7.1121 -1.4506 15 8 3.2663 -8.1763 -1.0668 16 7 4.4557 -7.0586 -2.5732 17 6 4.6352 -8.2606 -3.3911 18 1 3.7212 -8.8542 -3.3683 19 6 4.9416 -7.8533 -4.8339 20 6 4.8404 -9.0790 -5.7505 21 6 5.6667 -10.1879 -5.1473 22 6 6.1126 -11.3122 -5.7374 23 7 6.8121 -12.0093 -4.8140 24 1 7.2507 -12.8628 -4.9556 25 7 6.7912 -11.2818 -3.6144 26 6 6.1057 -10.1936 -3.8128 27 6 5.7955 -9.0913 -2.8293 28 6 2.5640 -6.0030 0.4115 29 6 1.5215 -4.8935 0.2387 30 1 -0.4852 0.8400 -0.0004 31 1 0.6242 -2.5567 0.8903 32 1 0.6247 -2.5571 -0.8895 33 1 2.3150 -3.8992 -2.0785 34 1 3.4272 -2.6720 -1.4251 35 1 4.8004 -4.4063 -0.3780 36 1 4.5802 -4.8173 -2.0994 37 1 4.8724 -6.2240 -2.8395 38 1 4.2251 -7.0984 -5.1576 39 1 5.9500 -7.4430 -4.8884 40 1 3.8003 -9.3957 -5.8276 41 1 5.2242 -8.8309 -6.7401 42 1 5.9419 -11.6050 -6.7628 43 1 6.6724 -8.4571 -2.6991 44 1 5.5081 -9.5237 -1.8709 45 1 3.1397 -5.8264 1.3200 46 1 2.0635 -6.9693 0.4740 47 1 0.9163 -4.8191 1.1423 48 1 0.8794 -5.1262 -0.6108 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601585285.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:54:56 Heat of formation + Delta-G solvation = 32.274355 kcal Electronic energy + Delta-G solvation = -28632.845343 eV Core-core repulsion = 24723.228454 eV Total energy + Delta-G solvation = -3909.616889 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.41293 -41.43287 -39.29158 -37.81355 -35.93157 -34.73264 -34.14790 -33.07057 -32.07651 -30.61735 -29.72021 -29.38159 -27.18468 -25.23837 -24.64181 -23.79658 -22.76210 -22.02708 -21.92283 -20.57100 -19.94301 -18.98374 -18.45578 -18.38145 -17.52406 -16.76576 -16.56751 -16.14545 -16.06528 -15.95800 -15.48211 -15.32272 -15.22177 -15.10923 -14.61106 -14.52343 -14.39124 -14.02402 -13.90443 -13.70937 -13.44745 -13.03345 -12.92295 -12.78148 -12.54121 -12.52744 -12.37852 -12.26743 -12.15501 -12.11301 -11.80524 -11.71111 -11.34859 -11.27209 -11.14221 -10.58092 -10.38297 -10.23433 -9.58307 -9.31846 -9.00779 -8.17036 -6.27443 0.99693 1.45748 1.48843 1.56356 1.58863 1.77824 2.01887 2.15300 2.43613 2.87443 3.15383 3.26348 3.56127 3.78461 3.92655 3.98997 4.07871 4.11536 4.21317 4.27708 4.32191 4.36255 4.48064 4.50235 4.56430 4.66707 4.71415 4.77690 4.87817 4.89005 4.97462 4.98525 5.03096 5.05873 5.21168 5.22889 5.26624 5.26680 5.37423 5.48188 5.55158 5.66591 5.73558 5.97206 6.06354 6.31892 6.51954 6.59131 6.74286 6.88314 6.96992 7.42449 7.55407 8.93946 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.025282 B = 0.002139 C = 0.002056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1107.241318 B =13087.524122 C =13614.988539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.001 4.001 3 Si 0.971 3.029 4 H -0.263 1.263 5 H -0.289 1.289 6 H -0.269 1.269 7 C -0.520 4.520 8 H 0.071 0.929 9 C 0.208 3.792 10 N -0.538 5.538 11 C 0.051 3.949 12 C 0.126 3.874 13 N -0.628 5.628 14 C 0.706 3.294 15 O -0.632 6.632 16 N -0.728 5.728 17 C 0.176 3.824 18 H 0.065 0.935 19 C -0.119 4.119 20 C -0.031 4.031 21 C -0.259 4.259 22 C 0.077 3.923 23 N -0.480 5.480 24 H 0.451 0.549 25 N -0.334 5.334 26 C 0.072 3.928 27 C -0.045 4.045 28 C 0.146 3.854 29 C 0.044 3.956 30 H 0.263 0.737 31 H 0.003 0.997 32 H -0.041 1.041 33 H 0.015 0.985 34 H 0.088 0.912 35 H 0.084 0.916 36 H 0.110 0.890 37 H 0.410 0.590 38 H 0.088 0.912 39 H 0.084 0.916 40 H 0.073 0.927 41 H 0.101 0.899 42 H 0.220 0.780 43 H 0.093 0.907 44 H 0.058 0.942 45 H 0.079 0.921 46 H 0.087 0.913 47 H 0.080 0.920 48 H 0.015 0.985 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.805 -19.522 -15.621 29.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.199 4.199 3 Si 0.796 3.204 4 H -0.188 1.188 5 H -0.215 1.215 6 H -0.194 1.194 7 C -0.558 4.558 8 H 0.089 0.911 9 C 0.082 3.918 10 N -0.263 5.263 11 C -0.078 4.078 12 C 0.003 3.997 13 N -0.365 5.365 14 C 0.408 3.592 15 O -0.514 6.514 16 N -0.386 5.386 17 C 0.070 3.930 18 H 0.083 0.917 19 C -0.157 4.157 20 C -0.069 4.069 21 C -0.271 4.271 22 C -0.070 4.070 23 N -0.190 5.190 24 H 0.297 0.703 25 N -0.158 5.158 26 C -0.097 4.097 27 C -0.085 4.085 28 C 0.023 3.977 29 C -0.085 4.085 30 H 0.072 0.928 31 H 0.022 0.978 32 H -0.023 1.023 33 H 0.034 0.966 34 H 0.106 0.894 35 H 0.103 0.897 36 H 0.128 0.872 37 H 0.249 0.751 38 H 0.106 0.894 39 H 0.103 0.897 40 H 0.091 0.909 41 H 0.119 0.881 42 H 0.236 0.764 43 H 0.111 0.889 44 H 0.076 0.924 45 H 0.097 0.903 46 H 0.105 0.895 47 H 0.099 0.901 48 H 0.033 0.967 Dipole moment (debyes) X Y Z Total from point charges 15.321 -20.778 -14.142 29.436 hybrid contribution -0.903 1.049 -0.842 1.620 sum 14.418 -19.729 -14.985 28.665 Atomic orbital electron populations 1.70090 1.07886 1.27925 1.51795 1.25949 0.95696 1.03339 0.94880 0.85410 0.78051 0.77726 0.79256 1.18765 1.21451 1.19362 1.21422 0.93843 0.90610 1.49945 0.91119 1.19377 0.90114 0.88960 0.93378 1.61996 1.26999 1.02467 1.34857 1.22370 0.95636 1.00047 0.89790 1.21881 0.94674 0.81072 1.02074 1.47410 1.49725 1.07745 1.31600 1.15981 0.79325 0.83312 0.80621 1.90871 1.59471 1.29506 1.71526 1.45207 1.54664 1.14196 1.24529 1.20705 0.97041 0.84798 0.90450 0.91669 1.21832 1.03796 0.98972 0.91078 1.19961 0.98408 0.90084 0.98473 1.20468 1.11424 1.01293 0.93882 1.22745 0.94569 0.92214 0.97451 1.46401 1.44433 1.21026 1.07105 0.70261 1.76956 1.24996 1.07701 1.06129 1.22356 0.96818 0.94495 0.96001 1.20413 0.99369 0.93149 0.95604 1.21450 0.90738 0.98035 0.87512 1.22446 0.95619 0.90093 1.00372 0.92803 0.97843 1.02298 0.96624 0.89413 0.89744 0.87200 0.75058 0.89352 0.89739 0.90872 0.88074 0.76374 0.88871 0.92366 0.90328 0.89505 0.90133 0.96712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.58 13.29 21.45 0.28 -55.29 16 2 C 0.00 -0.04 5.46 84.65 0.46 0.42 16 3 Si 0.97 42.72 29.54 68.60 2.03 44.74 16 4 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16 5 H -0.29 -12.64 7.11 99.48 0.71 -11.93 16 6 H -0.27 -11.44 7.11 99.48 0.71 -10.74 16 7 C -0.52 -28.18 8.41 25.60 0.22 -27.97 16 8 H 0.07 3.65 7.13 -2.91 -0.02 3.63 16 9 C 0.21 10.82 4.72 85.56 0.40 11.23 16 10 N -0.54 -22.26 4.62 -899.86 -4.16 -26.41 16 11 C 0.05 1.75 5.46 86.38 0.47 2.22 16 12 C 0.13 3.17 6.59 86.35 0.57 3.74 16 13 N -0.63 -18.22 3.01 -835.95 -2.52 -20.74 16 14 C 0.71 20.90 8.26 179.06 1.48 22.38 16 15 O -0.63 -23.67 15.54 -4.00 -0.06 -23.73 16 16 N -0.73 -15.30 4.99 -457.20 -2.28 -17.58 16 17 C 0.18 3.47 2.35 45.12 0.11 3.57 16 18 H 0.07 1.65 7.61 -2.38 -0.02 1.63 16 19 C -0.12 -1.45 5.33 30.73 0.16 -1.29 16 20 C -0.03 -0.33 6.28 30.03 0.19 -0.14 16 21 C -0.26 -4.02 5.89 -20.10 -0.12 -4.14 16 22 C 0.08 0.83 11.95 83.33 1.00 1.83 16 23 N -0.48 -6.82 7.37 -57.88 -0.43 -7.25 16 24 H 0.45 3.34 8.96 -213.19 -1.91 1.43 16 25 N -0.33 -7.82 12.68 -47.13 -0.60 -8.41 16 26 C 0.07 1.56 7.10 43.44 0.31 1.87 16 27 C -0.04 -0.98 5.88 30.05 0.18 -0.80 16 28 C 0.15 4.58 6.58 86.34 0.57 5.15 16 29 C 0.04 1.60 5.62 86.38 0.49 2.09 16 30 H 0.26 14.78 8.31 -92.71 -0.77 14.01 16 31 H 0.00 0.20 7.97 -2.39 -0.02 0.18 16 32 H -0.04 -2.33 8.12 -2.39 -0.02 -2.35 16 33 H 0.02 0.57 8.14 -2.39 -0.02 0.55 16 34 H 0.09 3.19 6.67 -2.39 -0.02 3.17 16 35 H 0.08 2.06 8.14 -2.38 -0.02 2.04 16 36 H 0.11 1.89 5.63 -2.39 -0.01 1.87 16 37 H 0.41 6.26 6.10 -92.71 -0.57 5.70 16 38 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 39 H 0.08 0.85 8.10 -2.38 -0.02 0.83 16 40 H 0.07 0.80 8.14 -2.39 -0.02 0.79 16 41 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 42 H 0.22 0.26 8.06 -2.91 -0.02 0.24 16 43 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 44 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 45 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 46 H 0.09 2.77 7.10 -2.39 -0.02 2.76 16 47 H 0.08 2.90 7.99 -2.39 -0.02 2.88 16 48 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 Total: -1.00 -77.52 379.28 -2.74 -80.26 By element: Atomic # 1 Polarization: 15.75 SS G_CDS: -1.49 Total: 14.27 kcal Atomic # 6 Polarization: 13.67 SS G_CDS: 6.48 Total: 20.15 kcal Atomic # 7 Polarization: -125.99 SS G_CDS: -9.70 Total: -135.69 kcal Atomic # 8 Polarization: -23.67 SS G_CDS: -0.06 Total: -23.73 kcal Atomic # 14 Polarization: 42.72 SS G_CDS: 2.03 Total: 44.74 kcal Total: -77.52 -2.74 -80.26 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601585285.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.535 kcal (2) G-P(sol) polarization free energy of solvation -77.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.261 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds