Wall clock time and date at job start Tue Mar 31 2020 17:54:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86801 * 120.00442 * 2 1 4 4 H 1.48496 * 109.47309 * 270.00188 * 3 2 1 5 5 H 1.48512 * 109.46841 * 30.00032 * 3 2 1 6 6 H 1.48503 * 109.47377 * 149.99739 * 3 2 1 7 7 C 1.37879 * 120.00061 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99563 * 0.02562 * 7 2 1 9 9 C 1.50694 * 120.00358 * 180.02562 * 7 2 1 10 10 N 1.46903 * 109.47470 * 180.02562 * 9 7 2 11 11 C 1.46900 * 110.99572 * 294.30334 * 10 9 7 12 12 C 1.53244 * 109.33866 * 172.74674 * 11 10 9 13 13 N 1.47083 * 108.52124 * 53.82762 * 12 11 10 14 14 C 1.34776 * 120.88081 * 128.83764 * 13 12 11 15 15 O 1.21579 * 120.00047 * 174.97787 * 14 13 12 16 16 N 1.34775 * 120.00049 * 354.98118 * 14 13 12 17 17 C 1.46493 * 120.00055 * 185.08157 * 16 14 13 18 18 H 1.08990 * 109.43482 * 324.90269 * 17 16 14 19 19 C 1.53033 * 109.43115 * 204.99924 * 17 16 14 20 20 C 1.53373 * 109.74488 * 168.20031 * 19 17 16 21 21 C 1.50947 * 108.20734 * 50.65212 * 20 19 17 22 22 N 1.30121 * 128.28443 * 163.37158 * 21 20 19 23 23 N 1.40312 * 108.12387 * 180.12135 * 22 21 20 24 24 H 0.97002 * 126.00484 * 179.97438 * 23 22 21 25 25 C 1.35197 * 107.99312 * 359.95355 * 23 22 21 26 26 C 1.34578 * 107.61708 * 359.96316 * 25 23 22 27 27 C 1.50878 * 128.32854 * 180.29774 * 26 25 23 28 28 C 1.47083 * 118.23605 * 308.81730 * 13 12 11 29 29 C 1.46898 * 111.00395 * 170.00171 * 10 9 7 30 30 H 0.97004 * 119.99809 * 359.97438 * 1 2 3 31 31 H 1.09001 * 109.47213 * 300.00114 * 9 7 2 32 32 H 1.09006 * 109.47478 * 60.00261 * 9 7 2 33 33 H 1.09009 * 109.49285 * 292.69940 * 11 10 9 34 34 H 1.08994 * 109.49650 * 52.78379 * 11 10 9 35 35 H 1.09002 * 109.62383 * 294.11954 * 12 11 10 36 36 H 1.08998 * 109.62752 * 173.54072 * 12 11 10 37 37 H 0.97009 * 119.99786 * 5.08926 * 16 14 13 38 38 H 1.08997 * 109.42360 * 288.28217 * 19 17 16 39 39 H 1.08994 * 109.42301 * 48.17278 * 19 17 16 40 40 H 1.09004 * 109.71596 * 170.33358 * 20 19 17 41 41 H 1.09004 * 109.71365 * 290.96864 * 20 19 17 42 42 H 1.07996 * 126.19703 * 179.97438 * 25 23 22 43 43 H 1.09009 * 109.71354 * 43.56800 * 27 26 25 44 44 H 1.08991 * 109.72292 * 282.91787 * 27 26 25 45 45 H 1.09000 * 109.62525 * 291.47394 * 28 13 12 46 46 H 1.08996 * 109.62779 * 170.89454 * 28 13 12 47 47 H 1.09003 * 109.49243 * 307.21280 * 29 10 9 48 48 H 1.09003 * 109.49159 * 67.26184 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1941 0.0011 10 7 4.0011 -2.5791 0.0010 11 6 3.6439 -3.2638 1.2506 12 6 4.0097 -4.7478 1.1387 13 7 5.4258 -4.8523 0.7550 14 6 6.2755 -5.6326 1.4519 15 8 7.4197 -5.7793 1.0680 16 7 5.8567 -6.2503 2.5741 17 6 6.8076 -7.0075 3.3918 18 1 7.5407 -7.4880 2.7440 19 6 6.0556 -8.0753 4.1895 20 6 7.0561 -9.0553 4.8148 21 6 8.1085 -8.2546 5.5427 22 7 8.9568 -8.6653 6.4398 23 7 9.7377 -7.5691 6.8364 24 1 10.4501 -7.5848 7.4945 25 6 9.3229 -6.4871 6.1398 26 6 8.3202 -6.8816 5.3336 27 6 7.5262 -6.0532 4.3539 28 6 5.8898 -4.0829 -0.4095 29 6 5.4501 -2.6253 -0.2365 30 1 -0.4850 0.8401 0.0004 31 1 3.8752 -0.6805 -0.8888 32 1 3.8746 -0.6801 0.8912 33 1 4.1913 -2.8159 2.0801 34 1 2.5727 -3.1655 1.4259 35 1 3.3885 -5.2216 0.3786 36 1 3.8538 -5.2368 2.1002 37 1 4.9256 -6.1936 2.8404 38 1 5.4755 -7.5968 4.9785 39 1 5.3844 -8.6188 3.5246 40 1 6.5400 -9.7093 5.5177 41 1 7.5242 -9.6523 4.0321 42 1 9.7238 -5.4872 6.2163 43 1 8.1977 -5.4027 3.7934 44 1 6.7931 -5.4512 4.8907 45 1 5.4493 -4.4930 -1.3183 46 1 6.9769 -4.1325 -0.4715 47 1 5.6886 -2.0638 -1.1399 48 1 5.9722 -2.1858 0.6134 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601592794.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:54:40 Heat of formation + Delta-G solvation = 36.000062 kcal Electronic energy + Delta-G solvation = -28763.255126 eV Core-core repulsion = 24853.799796 eV Total energy + Delta-G solvation = -3909.455330 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.43124 -41.40915 -39.30456 -37.81112 -35.92116 -34.75134 -34.24002 -32.82934 -31.98710 -31.20004 -30.41215 -28.81214 -27.12414 -25.35782 -24.67188 -23.56247 -22.70172 -21.97713 -21.88658 -20.63742 -19.85262 -18.98018 -18.82743 -18.54638 -17.48991 -16.61212 -16.49017 -16.28286 -16.12904 -15.96503 -15.61419 -15.37864 -15.21208 -14.99582 -14.55409 -14.48669 -14.35982 -14.27826 -13.86964 -13.70836 -13.57483 -13.12940 -12.95207 -12.94727 -12.82515 -12.49437 -12.31775 -12.18115 -12.01555 -11.94172 -11.82485 -11.76715 -11.41438 -11.38282 -11.11646 -10.75307 -10.35230 -10.18482 -9.57238 -9.36724 -9.00782 -8.25568 -6.28158 0.95669 1.37133 1.38163 1.47823 1.63933 1.75207 2.00222 2.16667 2.36212 2.87903 3.07318 3.18980 3.52657 3.84226 3.87998 3.99847 4.07920 4.10800 4.20041 4.28127 4.29263 4.42393 4.45199 4.49579 4.55976 4.63555 4.73232 4.77759 4.78865 4.84762 4.90419 4.97132 4.98187 5.04397 5.07654 5.16099 5.17146 5.22731 5.30502 5.48034 5.55676 5.58674 5.72951 5.90989 6.07565 6.34345 6.45966 6.63076 6.72084 6.78247 6.99178 7.35454 7.58807 8.90262 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.020092 B = 0.002281 C = 0.002240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.232890 B =12271.242348 C =12498.540526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C 0.011 3.989 3 Si 0.942 3.058 4 H -0.267 1.267 5 H -0.284 1.284 6 H -0.255 1.255 7 C -0.511 4.511 8 H 0.047 0.953 9 C 0.172 3.828 10 N -0.539 5.539 11 C 0.051 3.949 12 C 0.127 3.873 13 N -0.628 5.628 14 C 0.708 3.292 15 O -0.631 6.631 16 N -0.730 5.730 17 C 0.168 3.832 18 H 0.068 0.932 19 C -0.113 4.113 20 C -0.033 4.033 21 C 0.071 3.929 22 N -0.323 5.323 23 N -0.479 5.479 24 H 0.451 0.549 25 C 0.071 3.929 26 C -0.255 4.255 27 C -0.043 4.043 28 C 0.143 3.857 29 C 0.042 3.958 30 H 0.266 0.734 31 H 0.029 0.971 32 H -0.016 1.016 33 H 0.024 0.976 34 H 0.078 0.922 35 H 0.079 0.921 36 H 0.108 0.892 37 H 0.408 0.592 38 H 0.084 0.916 39 H 0.098 0.902 40 H 0.102 0.898 41 H 0.090 0.910 42 H 0.205 0.795 43 H 0.054 0.946 44 H 0.077 0.923 45 H 0.076 0.924 46 H 0.090 0.910 47 H 0.090 0.910 48 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.820 -15.629 12.720 26.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.187 4.187 3 Si 0.766 3.234 4 H -0.192 1.192 5 H -0.210 1.210 6 H -0.178 1.178 7 C -0.550 4.550 8 H 0.065 0.935 9 C 0.044 3.956 10 N -0.263 5.263 11 C -0.078 4.078 12 C 0.004 3.996 13 N -0.365 5.365 14 C 0.409 3.591 15 O -0.513 6.513 16 N -0.387 5.387 17 C 0.063 3.937 18 H 0.086 0.914 19 C -0.152 4.152 20 C -0.073 4.073 21 C -0.097 4.097 22 N -0.146 5.146 23 N -0.189 5.189 24 H 0.298 0.702 25 C -0.076 4.076 26 C -0.267 4.267 27 C -0.082 4.082 28 C 0.020 3.980 29 C -0.087 4.087 30 H 0.075 0.925 31 H 0.047 0.953 32 H 0.002 0.998 33 H 0.042 0.958 34 H 0.096 0.904 35 H 0.097 0.903 36 H 0.126 0.874 37 H 0.247 0.753 38 H 0.103 0.897 39 H 0.116 0.884 40 H 0.120 0.880 41 H 0.109 0.891 42 H 0.222 0.778 43 H 0.073 0.927 44 H 0.095 0.905 45 H 0.094 0.906 46 H 0.108 0.892 47 H 0.108 0.892 48 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 17.692 -16.857 12.749 27.563 hybrid contribution 0.100 2.384 0.544 2.447 sum 17.793 -14.473 13.292 26.509 Atomic orbital electron populations 1.70031 1.07943 1.27982 1.52617 1.25760 0.95518 1.02829 0.94586 0.85800 0.79287 0.79205 0.79124 1.19186 1.20983 1.17849 1.21222 0.90737 0.93421 1.49582 0.93508 1.19938 0.94503 0.86179 0.94933 1.61802 1.12288 1.17054 1.35177 1.22337 1.01398 0.94113 0.89903 1.21813 0.80456 0.95480 1.01888 1.47413 1.09749 1.47561 1.31793 1.15938 0.83819 0.78838 0.80471 1.90860 1.19754 1.68778 1.71878 1.45239 1.13532 1.55691 1.24261 1.20796 0.90802 0.91300 0.90813 0.91386 1.21781 0.97706 0.95731 0.99940 1.20149 0.92305 0.96227 0.98595 1.22762 0.96975 0.94401 0.95575 1.76920 1.08822 1.10625 1.18261 1.46360 1.31417 1.05336 1.35796 0.70221 1.22566 0.96455 0.94672 0.93897 1.20162 1.04674 0.94964 1.06864 1.20253 0.97512 0.96339 0.94132 1.21485 1.00108 0.89012 0.87404 1.22522 0.88068 0.97062 1.01072 0.92502 0.95310 0.99792 0.95818 0.90372 0.90272 0.87390 0.75287 0.89733 0.88400 0.88003 0.89137 0.77782 0.92735 0.90484 0.90597 0.89169 0.89157 0.95828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.14 13.96 21.45 0.30 -56.84 16 2 C 0.01 0.60 5.47 84.66 0.46 1.06 16 3 Si 0.94 42.83 27.47 68.60 1.88 44.71 16 4 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 5 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 6 H -0.25 -10.90 6.54 99.48 0.65 -10.25 16 7 C -0.51 -28.04 8.96 25.60 0.23 -27.81 16 8 H 0.05 2.82 7.37 -2.91 -0.02 2.80 16 9 C 0.17 7.83 3.79 85.55 0.32 8.16 16 10 N -0.54 -20.66 4.62 -899.81 -4.16 -24.82 16 11 C 0.05 1.73 5.46 86.38 0.47 2.20 16 12 C 0.13 3.15 6.59 86.35 0.57 3.72 16 13 N -0.63 -17.05 3.01 -835.94 -2.52 -19.56 16 14 C 0.71 19.52 8.27 179.06 1.48 21.00 16 15 O -0.63 -22.00 15.45 -3.96 -0.06 -22.06 16 16 N -0.73 -14.33 4.99 -457.17 -2.28 -16.61 16 17 C 0.17 3.07 2.44 45.13 0.11 3.18 16 18 H 0.07 1.60 7.47 -2.39 -0.02 1.58 16 19 C -0.11 -1.35 5.33 30.73 0.16 -1.19 16 20 C -0.03 -0.45 6.31 30.05 0.19 -0.26 16 21 C 0.07 1.35 7.10 43.44 0.31 1.66 16 22 N -0.32 -6.66 12.68 -47.14 -0.60 -7.26 16 23 N -0.48 -7.08 7.37 -57.88 -0.43 -7.50 16 24 H 0.45 3.61 8.96 -213.18 -1.91 1.70 16 25 C 0.07 1.03 11.95 83.34 1.00 2.02 16 26 C -0.25 -4.69 5.89 -20.10 -0.12 -4.81 16 27 C -0.04 -0.80 5.85 30.03 0.18 -0.63 16 28 C 0.14 4.07 6.58 86.35 0.57 4.64 16 29 C 0.04 1.32 5.62 86.38 0.49 1.81 16 30 H 0.27 15.07 8.31 -92.71 -0.77 14.30 16 31 H 0.03 1.30 7.40 -2.39 -0.02 1.28 16 32 H -0.02 -0.72 7.18 -2.38 -0.02 -0.74 16 33 H 0.02 0.80 8.14 -2.38 -0.02 0.78 16 34 H 0.08 3.00 6.67 -2.39 -0.02 2.99 16 35 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 36 H 0.11 1.87 5.63 -2.39 -0.01 1.86 16 37 H 0.41 5.98 6.10 -92.70 -0.57 5.41 16 38 H 0.08 0.88 8.10 -2.39 -0.02 0.86 16 39 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 40 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 41 H 0.09 1.16 8.14 -2.38 -0.02 1.14 16 42 H 0.21 1.56 8.06 -2.91 -0.02 1.53 16 43 H 0.05 1.25 8.14 -2.38 -0.02 1.23 16 44 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 45 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 46 H 0.09 2.58 7.10 -2.39 -0.02 2.56 16 47 H 0.09 2.68 7.99 -2.39 -0.02 2.66 16 48 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 Total: -1.00 -75.49 375.53 -2.98 -78.47 By element: Atomic # 1 Polarization: 18.25 SS G_CDS: -1.54 Total: 16.71 kcal Atomic # 6 Polarization: 8.34 SS G_CDS: 6.42 Total: 14.75 kcal Atomic # 7 Polarization: -122.91 SS G_CDS: -9.68 Total: -132.59 kcal Atomic # 8 Polarization: -22.00 SS G_CDS: -0.06 Total: -22.06 kcal Atomic # 14 Polarization: 42.83 SS G_CDS: 1.88 Total: 44.71 kcal Total: -75.49 -2.98 -78.47 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601592794.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.473 kcal (2) G-P(sol) polarization free energy of solvation -75.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.473 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds