Wall clock time and date at job start Tue Mar 31 2020 17:54:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86802 * 120.00544 * 2 1 4 4 H 1.48504 * 109.46936 * 269.99716 * 3 2 1 5 5 H 1.48499 * 109.46847 * 29.99448 * 3 2 1 6 6 H 1.48500 * 109.47320 * 149.99678 * 3 2 1 7 7 C 1.37887 * 119.99753 * 179.97438 * 2 1 3 8 8 H 1.07991 * 119.99947 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99744 * 0.02562 * 7 2 1 10 10 N 1.46897 * 109.47326 * 184.98812 * 9 7 2 11 11 C 1.46906 * 110.99866 * 295.01879 * 10 9 7 12 12 C 1.53238 * 109.36084 * 187.23614 * 11 10 9 13 13 N 1.47091 * 108.51850 * 306.21167 * 12 11 10 14 14 C 1.34780 * 120.85736 * 231.19139 * 13 12 11 15 15 O 1.21588 * 119.99894 * 184.97306 * 14 13 12 16 16 N 1.34775 * 120.00109 * 4.96472 * 14 13 12 17 17 C 1.46504 * 120.00214 * 174.93151 * 16 14 13 18 18 H 1.09002 * 109.42177 * 35.10295 * 17 16 14 19 19 C 1.53026 * 109.42951 * 155.00143 * 17 16 14 20 20 C 1.53370 * 109.74375 * 191.80390 * 19 17 16 21 21 C 1.50942 * 108.20817 * 309.35421 * 20 19 17 22 22 N 1.30136 * 128.28567 * 196.64972 * 21 20 19 23 23 N 1.40309 * 108.12035 * 179.86357 * 22 21 20 24 24 H 0.97010 * 126.00347 * 180.02562 * 23 22 21 25 25 C 1.35198 * 107.99825 * 0.04111 * 23 22 21 26 26 C 1.34574 * 107.61262 * 0.03438 * 25 23 22 27 27 C 1.50881 * 128.32293 * 179.70660 * 26 25 23 28 28 C 1.47075 * 118.25964 * 51.13724 * 13 12 11 29 29 C 1.46903 * 110.99904 * 59.31475 * 10 9 7 30 30 H 0.97008 * 119.99670 * 0.02562 * 1 2 3 31 31 H 1.08998 * 109.47110 * 64.98640 * 9 7 2 32 32 H 1.08998 * 109.47141 * 304.98537 * 9 7 2 33 33 H 1.08996 * 109.48813 * 307.21041 * 11 10 9 34 34 H 1.08996 * 109.49391 * 67.26298 * 11 10 9 35 35 H 1.09001 * 109.62867 * 65.89187 * 12 11 10 36 36 H 1.08991 * 109.62880 * 186.47147 * 12 11 10 37 37 H 0.97006 * 119.99797 * 354.93814 * 16 14 13 38 38 H 1.08997 * 109.42360 * 311.89004 * 19 17 16 39 39 H 1.08996 * 109.42015 * 71.72263 * 19 17 16 40 40 H 1.09001 * 109.71580 * 69.03369 * 20 19 17 41 41 H 1.08997 * 109.71675 * 189.67209 * 20 19 17 42 42 H 1.08000 * 126.19453 * 180.02562 * 25 23 22 43 43 H 1.09004 * 109.71513 * 77.07998 * 27 26 25 44 44 H 1.09000 * 109.72441 * 316.43091 * 27 26 25 45 45 H 1.08997 * 109.62754 * 189.12131 * 28 13 12 46 46 H 1.09005 * 109.78687 * 68.64361 * 28 13 12 47 47 H 1.08997 * 109.49393 * 292.71078 * 29 10 9 48 48 H 1.09000 * 109.49131 * 52.76190 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6527 0.6999 6 1 3.5468 1.4400 0.7001 7 6 2.0045 -1.1942 0.0005 8 1 3.0844 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 7 2.2007 -3.6132 0.1216 11 6 3.0755 -3.6895 -1.0562 12 6 3.9241 -4.9630 -0.9771 13 7 4.6210 -4.9802 0.3181 14 6 5.9522 -5.1806 0.3842 15 8 6.4988 -5.2821 1.4656 16 7 6.6775 -5.2686 -0.7483 17 6 8.1369 -5.3749 -0.6772 18 1 8.4153 -5.9623 0.1978 19 6 8.6593 -6.0636 -1.9400 20 6 10.1331 -6.4438 -1.7509 21 6 10.8764 -5.2232 -1.2650 22 7 12.1602 -5.0104 -1.2591 23 7 12.3888 -3.7361 -0.7180 24 1 13.2544 -3.3163 -0.5937 25 6 11.1908 -3.1963 -0.3999 26 6 10.2410 -4.0924 -0.7255 27 6 8.7458 -3.9718 -0.5633 28 6 3.8275 -4.7719 1.5387 29 6 2.9831 -3.5057 1.3603 30 1 -0.4850 0.8401 -0.0004 31 1 0.6933 -2.5967 -0.9309 32 1 0.5586 -2.5190 0.8422 33 1 2.4669 -3.7134 -1.9602 34 1 3.7292 -2.8177 -1.0808 35 1 3.2793 -5.8382 -1.0572 36 1 4.6542 -4.9673 -1.7863 37 1 6.2332 -5.2615 -1.6106 38 1 8.0743 -6.9633 -2.1305 39 1 8.5659 -5.3850 -2.7878 40 1 10.2151 -7.2421 -1.0133 41 1 10.5520 -6.7756 -2.7008 42 1 11.0258 -2.2223 0.0366 43 1 8.3415 -3.3307 -1.3467 44 1 8.5148 -3.5489 0.4145 45 1 4.4940 -4.6503 2.3925 46 1 3.1733 -5.6280 1.7041 47 1 3.6385 -2.6367 1.3022 48 1 2.3077 -3.3958 2.2087 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601592801.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:54:44 Heat of formation + Delta-G solvation = 55.797465 kcal Electronic energy + Delta-G solvation = -29048.231929 eV Core-core repulsion = 25139.635079 eV Total energy + Delta-G solvation = -3908.596850 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.69526 -40.18394 -37.96948 -36.77309 -34.41220 -33.66539 -32.36016 -31.92167 -30.72307 -30.33276 -28.47152 -27.51539 -25.35211 -24.57582 -23.16636 -22.52427 -21.73576 -21.23810 -20.50584 -19.54215 -18.85600 -17.85608 -17.75309 -16.41534 -16.34900 -15.56387 -15.25338 -15.09199 -14.77339 -14.54582 -14.38070 -14.10848 -13.83479 -13.76547 -13.48504 -13.37390 -13.19266 -12.94362 -12.71205 -12.35531 -12.20656 -12.03094 -11.84763 -11.31742 -11.17909 -11.10540 -11.05349 -10.95805 -10.68094 -10.63241 -10.58600 -10.24231 -9.98480 -9.81393 -9.65056 -9.62866 -9.07965 -8.62710 -8.48572 -8.26919 -7.26235 -6.08254 -4.17634 1.66656 2.50649 2.60178 2.79205 3.23259 3.30847 3.33863 3.40591 3.95170 4.23032 4.36112 4.53833 4.56391 4.79180 4.90068 4.97740 5.11893 5.22034 5.23768 5.31170 5.35589 5.38881 5.46890 5.48788 5.54923 5.65824 5.73631 5.76770 5.90152 5.93977 5.98749 6.00758 6.10245 6.15085 6.41403 6.41861 6.58374 6.59876 6.73779 6.77767 7.03957 7.15778 7.19451 7.43027 7.46226 7.83517 7.94206 8.12240 8.18533 8.22630 8.78562 8.92380 9.49729 10.96796 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.013837 B = 0.002805 C = 0.002486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2023.020286 B = 9981.270558 C =11260.376296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.066 3.934 3 Si 0.888 3.112 4 H -0.280 1.280 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.551 4.551 8 H 0.056 0.944 9 C 0.188 3.812 10 N -0.540 5.540 11 C 0.049 3.951 12 C 0.116 3.884 13 N -0.623 5.623 14 C 0.709 3.291 15 O -0.597 6.597 16 N -0.746 5.746 17 C 0.168 3.832 18 H 0.091 0.909 19 C -0.124 4.124 20 C -0.033 4.033 21 C 0.080 3.920 22 N -0.291 5.291 23 N -0.486 5.486 24 H 0.438 0.562 25 C 0.062 3.938 26 C -0.227 4.227 27 C -0.053 4.053 28 C 0.134 3.866 29 C 0.051 3.949 30 H 0.263 0.737 31 H 0.028 0.972 32 H 0.036 0.964 33 H 0.077 0.923 34 H 0.041 0.959 35 H 0.071 0.929 36 H 0.069 0.931 37 H 0.395 0.605 38 H 0.080 0.920 39 H 0.073 0.927 40 H 0.088 0.912 41 H 0.087 0.913 42 H 0.177 0.823 43 H 0.072 0.928 44 H 0.077 0.923 45 H 0.086 0.914 46 H 0.065 0.935 47 H 0.043 0.957 48 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.874 -11.064 -4.723 22.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.137 4.137 3 Si 0.716 3.284 4 H -0.206 1.206 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.590 4.590 8 H 0.074 0.926 9 C 0.062 3.938 10 N -0.264 5.264 11 C -0.081 4.081 12 C -0.008 4.008 13 N -0.360 5.360 14 C 0.410 3.590 15 O -0.475 6.475 16 N -0.403 5.403 17 C 0.062 3.938 18 H 0.109 0.891 19 C -0.162 4.162 20 C -0.072 4.072 21 C -0.089 4.089 22 N -0.113 5.113 23 N -0.195 5.195 24 H 0.282 0.718 25 C -0.083 4.083 26 C -0.239 4.239 27 C -0.093 4.093 28 C 0.010 3.990 29 C -0.079 4.079 30 H 0.072 0.928 31 H 0.046 0.954 32 H 0.054 0.946 33 H 0.095 0.905 34 H 0.060 0.940 35 H 0.089 0.911 36 H 0.087 0.913 37 H 0.232 0.768 38 H 0.099 0.901 39 H 0.092 0.908 40 H 0.106 0.894 41 H 0.105 0.895 42 H 0.194 0.806 43 H 0.091 0.909 44 H 0.095 0.905 45 H 0.105 0.895 46 H 0.083 0.917 47 H 0.061 0.939 48 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 19.950 -11.910 -4.166 23.605 hybrid contribution 0.349 2.725 -0.235 2.757 sum 20.299 -9.185 -4.401 22.710 Atomic orbital electron populations 1.69937 1.06000 1.26898 1.49977 1.24954 0.94753 0.99141 0.94840 0.86658 0.79961 0.83659 0.78135 1.20644 1.21080 1.19974 1.21731 0.93254 0.92103 1.51906 0.92615 1.19765 0.90739 0.85345 0.97941 1.62482 1.16894 1.46547 1.00472 1.22233 0.95419 0.95057 0.95396 1.21831 0.95109 0.99831 0.84007 1.47355 1.05172 1.75001 1.08496 1.15823 0.81237 0.77660 0.84237 1.90881 1.70618 1.58710 1.27336 1.45326 1.06645 1.80551 1.07824 1.20738 0.78184 0.95903 0.98981 0.89110 1.21835 0.95134 1.01389 0.97871 1.20041 0.92632 0.92598 1.01975 1.22357 0.90747 0.97093 0.98658 1.76971 1.16974 0.97133 1.20272 1.46302 1.08020 1.13522 1.51617 0.71786 1.22096 0.85399 0.99854 1.00966 1.20036 0.96603 0.95654 1.11594 1.20418 0.88655 0.97502 1.02710 1.21699 0.93055 0.98192 0.86009 1.22263 0.96033 0.95251 0.94334 0.92754 0.95352 0.94557 0.90509 0.94033 0.91074 0.91301 0.76837 0.90093 0.90812 0.89413 0.89460 0.80628 0.90948 0.90470 0.89536 0.91676 0.93882 0.90340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.55 13.29 55.43 0.74 -24.81 16 2 C 0.07 1.81 5.46 -17.82 -0.10 1.71 16 3 Si 0.89 21.06 29.54 -169.99 -5.02 16.04 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 7 C -0.55 -14.63 7.75 -34.44 -0.27 -14.89 16 8 H 0.06 1.49 5.88 -52.49 -0.31 1.18 16 9 C 0.19 4.60 5.11 -4.98 -0.03 4.58 16 10 N -0.54 -10.82 4.83 -235.77 -1.14 -11.95 16 11 C 0.05 0.84 5.24 -3.70 -0.02 0.82 16 12 C 0.12 1.55 6.60 -3.60 -0.02 1.52 16 13 N -0.62 -9.54 3.01 -178.19 -0.54 -10.08 16 14 C 0.71 11.01 8.27 -86.92 -0.72 10.29 16 15 O -0.60 -11.29 15.45 5.29 0.08 -11.21 16 16 N -0.75 -8.63 4.99 -58.46 -0.29 -8.92 16 17 C 0.17 1.77 2.44 -67.72 -0.17 1.60 16 18 H 0.09 1.15 7.47 -51.93 -0.39 0.77 16 19 C -0.12 -0.93 5.33 -26.53 -0.14 -1.07 16 20 C -0.03 -0.26 6.31 -27.57 -0.17 -0.43 16 21 C 0.08 0.86 7.10 -82.35 -0.58 0.27 16 22 N -0.29 -3.31 12.68 33.75 0.43 -2.88 16 23 N -0.49 -4.27 7.37 30.35 0.22 -4.05 16 24 H 0.44 2.37 8.96 -182.43 -1.64 0.74 16 25 C 0.06 0.56 11.95 -17.36 -0.21 0.35 16 26 C -0.23 -2.42 5.89 -104.98 -0.62 -3.04 16 27 C -0.05 -0.59 5.85 -27.60 -0.16 -0.75 16 28 C 0.13 2.18 6.58 -3.61 -0.02 2.15 16 29 C 0.05 0.96 5.15 -3.70 -0.02 0.94 16 30 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 31 H 0.03 0.74 8.07 -51.93 -0.42 0.32 16 32 H 0.04 0.97 8.14 -51.93 -0.42 0.54 16 33 H 0.08 1.29 8.05 -51.93 -0.42 0.87 16 34 H 0.04 0.81 6.92 -51.93 -0.36 0.45 16 35 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.07 0.70 5.63 -51.93 -0.29 0.41 16 37 H 0.40 3.69 6.10 -40.82 -0.25 3.44 16 38 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.07 0.52 8.10 -51.93 -0.42 0.10 16 40 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.18 1.07 8.06 -52.49 -0.42 0.65 16 43 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 44 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 45 H 0.09 1.45 7.09 -51.93 -0.37 1.08 16 46 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 47 H 0.04 0.92 6.79 -51.93 -0.35 0.57 16 48 H 0.08 1.49 8.11 -51.93 -0.42 1.07 16 LS Contribution 376.19 15.07 5.67 5.67 Total: -1.00 -33.58 376.19 -11.67 -45.25 By element: Atomic # 1 Polarization: 11.47 SS G_CDS: -8.57 Total: 2.90 kcal Atomic # 6 Polarization: 7.30 SS G_CDS: -3.25 Total: 4.06 kcal Atomic # 7 Polarization: -62.12 SS G_CDS: -0.58 Total: -62.70 kcal Atomic # 8 Polarization: -11.29 SS G_CDS: 0.08 Total: -11.21 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -33.58 -11.67 -45.25 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601592801.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.047 kcal (2) G-P(sol) polarization free energy of solvation -33.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.249 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds