Wall clock time and date at job start Tue Mar 31 2020 17:54:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86802 * 120.00544 * 2 1 4 4 H 1.48504 * 109.46936 * 269.99716 * 3 2 1 5 5 H 1.48499 * 109.46847 * 29.99448 * 3 2 1 6 6 H 1.48500 * 109.47320 * 149.99678 * 3 2 1 7 7 C 1.37887 * 119.99753 * 179.97438 * 2 1 3 8 8 H 1.07991 * 119.99947 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99744 * 0.02562 * 7 2 1 10 10 N 1.46897 * 109.47326 * 184.98812 * 9 7 2 11 11 C 1.46906 * 110.99866 * 295.01879 * 10 9 7 12 12 C 1.53238 * 109.36084 * 187.23614 * 11 10 9 13 13 N 1.47091 * 108.51850 * 306.21167 * 12 11 10 14 14 C 1.34780 * 120.85736 * 231.19139 * 13 12 11 15 15 O 1.21588 * 119.99894 * 184.97306 * 14 13 12 16 16 N 1.34775 * 120.00109 * 4.96472 * 14 13 12 17 17 C 1.46504 * 120.00214 * 174.93151 * 16 14 13 18 18 H 1.09002 * 109.42177 * 35.10295 * 17 16 14 19 19 C 1.53026 * 109.42951 * 155.00143 * 17 16 14 20 20 C 1.53370 * 109.74375 * 191.80390 * 19 17 16 21 21 C 1.50942 * 108.20817 * 309.35421 * 20 19 17 22 22 N 1.30136 * 128.28567 * 196.64972 * 21 20 19 23 23 N 1.40309 * 108.12035 * 179.86357 * 22 21 20 24 24 H 0.97010 * 126.00347 * 180.02562 * 23 22 21 25 25 C 1.35198 * 107.99825 * 0.04111 * 23 22 21 26 26 C 1.34574 * 107.61262 * 0.03438 * 25 23 22 27 27 C 1.50881 * 128.32293 * 179.70660 * 26 25 23 28 28 C 1.47075 * 118.25964 * 51.13724 * 13 12 11 29 29 C 1.46903 * 110.99904 * 59.31475 * 10 9 7 30 30 H 0.97008 * 119.99670 * 0.02562 * 1 2 3 31 31 H 1.08998 * 109.47110 * 64.98640 * 9 7 2 32 32 H 1.08998 * 109.47141 * 304.98537 * 9 7 2 33 33 H 1.08996 * 109.48813 * 307.21041 * 11 10 9 34 34 H 1.08996 * 109.49391 * 67.26298 * 11 10 9 35 35 H 1.09001 * 109.62867 * 65.89187 * 12 11 10 36 36 H 1.08991 * 109.62880 * 186.47147 * 12 11 10 37 37 H 0.97006 * 119.99797 * 354.93814 * 16 14 13 38 38 H 1.08997 * 109.42360 * 311.89004 * 19 17 16 39 39 H 1.08996 * 109.42015 * 71.72263 * 19 17 16 40 40 H 1.09001 * 109.71580 * 69.03369 * 20 19 17 41 41 H 1.08997 * 109.71675 * 189.67209 * 20 19 17 42 42 H 1.08000 * 126.19453 * 180.02562 * 25 23 22 43 43 H 1.09004 * 109.71513 * 77.07998 * 27 26 25 44 44 H 1.09000 * 109.72441 * 316.43091 * 27 26 25 45 45 H 1.08997 * 109.62754 * 189.12131 * 28 13 12 46 46 H 1.09005 * 109.78687 * 68.64361 * 28 13 12 47 47 H 1.08997 * 109.49393 * 292.71078 * 29 10 9 48 48 H 1.09000 * 109.49131 * 52.76190 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6527 0.6999 6 1 3.5468 1.4400 0.7001 7 6 2.0045 -1.1942 0.0005 8 1 3.0844 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 7 2.2007 -3.6132 0.1216 11 6 3.0755 -3.6895 -1.0562 12 6 3.9241 -4.9630 -0.9771 13 7 4.6210 -4.9802 0.3181 14 6 5.9522 -5.1806 0.3842 15 8 6.4988 -5.2821 1.4656 16 7 6.6775 -5.2686 -0.7483 17 6 8.1369 -5.3749 -0.6772 18 1 8.4153 -5.9623 0.1978 19 6 8.6593 -6.0636 -1.9400 20 6 10.1331 -6.4438 -1.7509 21 6 10.8764 -5.2232 -1.2650 22 7 12.1602 -5.0104 -1.2591 23 7 12.3888 -3.7361 -0.7180 24 1 13.2544 -3.3163 -0.5937 25 6 11.1908 -3.1963 -0.3999 26 6 10.2410 -4.0924 -0.7255 27 6 8.7458 -3.9718 -0.5633 28 6 3.8275 -4.7719 1.5387 29 6 2.9831 -3.5057 1.3603 30 1 -0.4850 0.8401 -0.0004 31 1 0.6933 -2.5967 -0.9309 32 1 0.5586 -2.5190 0.8422 33 1 2.4669 -3.7134 -1.9602 34 1 3.7292 -2.8177 -1.0808 35 1 3.2793 -5.8382 -1.0572 36 1 4.6542 -4.9673 -1.7863 37 1 6.2332 -5.2615 -1.6106 38 1 8.0743 -6.9633 -2.1305 39 1 8.5659 -5.3850 -2.7878 40 1 10.2151 -7.2421 -1.0133 41 1 10.5520 -6.7756 -2.7008 42 1 11.0258 -2.2223 0.0366 43 1 8.3415 -3.3307 -1.3467 44 1 8.5148 -3.5489 0.4145 45 1 4.4940 -4.6503 2.3925 46 1 3.1733 -5.6280 1.7041 47 1 3.6385 -2.6367 1.3022 48 1 2.3077 -3.3958 2.2087 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601592801.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:54:43 Heat of formation + Delta-G solvation = 31.533632 kcal Electronic energy + Delta-G solvation = -29049.284088 eV Core-core repulsion = 25139.635079 eV Total energy + Delta-G solvation = -3909.649009 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.43725 -41.38461 -39.29445 -37.80824 -35.96350 -34.72132 -34.15245 -32.81792 -31.92354 -31.18940 -29.89606 -28.66039 -27.04392 -25.41505 -24.50657 -24.11694 -22.76720 -21.97958 -21.84997 -20.64496 -19.88488 -18.98919 -18.55234 -18.29647 -17.49036 -16.80420 -16.46410 -16.26225 -16.04517 -15.91423 -15.51420 -15.41657 -15.25885 -14.89487 -14.57184 -14.43458 -14.28688 -13.93385 -13.74789 -13.59911 -13.49982 -13.02902 -12.96490 -12.92000 -12.84311 -12.50340 -12.45609 -12.18168 -12.02249 -11.90782 -11.81820 -11.78130 -11.61759 -11.41254 -11.08710 -10.60630 -10.35510 -10.17513 -9.54712 -9.37769 -8.99715 -8.16041 -6.35133 0.94255 1.34857 1.36722 1.46211 1.65595 1.74334 1.99153 2.19577 2.36180 2.91796 3.09047 3.34899 3.52250 3.84502 3.87840 4.06181 4.10214 4.17129 4.24783 4.28224 4.41274 4.42920 4.49053 4.57918 4.62144 4.67820 4.72698 4.78333 4.82410 4.92444 4.98254 5.04990 5.10395 5.16107 5.22113 5.22949 5.24903 5.31330 5.34302 5.53314 5.59201 5.72854 5.74135 5.97284 6.06953 6.24692 6.44427 6.50086 6.71149 6.85363 7.02856 7.36345 7.61001 8.85951 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.013837 B = 0.002805 C = 0.002486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2023.020286 B = 9981.270558 C =11260.376296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.015 3.985 3 Si 0.952 3.048 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.274 1.274 7 C -0.555 4.555 8 H 0.051 0.949 9 C 0.200 3.800 10 N -0.535 5.535 11 C 0.047 3.953 12 C 0.126 3.874 13 N -0.628 5.628 14 C 0.706 3.294 15 O -0.634 6.634 16 N -0.729 5.729 17 C 0.169 3.831 18 H 0.068 0.932 19 C -0.112 4.112 20 C -0.033 4.033 21 C 0.072 3.928 22 N -0.322 5.322 23 N -0.479 5.479 24 H 0.451 0.549 25 C 0.069 3.931 26 C -0.254 4.254 27 C -0.045 4.045 28 C 0.145 3.855 29 C 0.057 3.943 30 H 0.265 0.735 31 H 0.011 0.989 32 H 0.008 0.992 33 H 0.083 0.917 34 H 0.018 0.982 35 H 0.090 0.910 36 H 0.107 0.893 37 H 0.409 0.591 38 H 0.101 0.899 39 H 0.084 0.916 40 H 0.091 0.909 41 H 0.104 0.896 42 H 0.203 0.797 43 H 0.075 0.925 44 H 0.049 0.951 45 H 0.080 0.920 46 H 0.082 0.918 47 H 0.014 0.986 48 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.391 -11.709 -6.279 24.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.185 4.185 3 Si 0.778 3.222 4 H -0.197 1.197 5 H -0.207 1.207 6 H -0.198 1.198 7 C -0.594 4.594 8 H 0.069 0.931 9 C 0.074 3.926 10 N -0.259 5.259 11 C -0.082 4.082 12 C 0.003 3.997 13 N -0.364 5.364 14 C 0.407 3.593 15 O -0.516 6.516 16 N -0.386 5.386 17 C 0.063 3.937 18 H 0.086 0.914 19 C -0.150 4.150 20 C -0.072 4.072 21 C -0.096 4.096 22 N -0.145 5.145 23 N -0.189 5.189 24 H 0.298 0.702 25 C -0.078 4.078 26 C -0.266 4.266 27 C -0.085 4.085 28 C 0.021 3.979 29 C -0.072 4.072 30 H 0.074 0.926 31 H 0.029 0.971 32 H 0.026 0.974 33 H 0.101 0.899 34 H 0.036 0.964 35 H 0.108 0.892 36 H 0.125 0.875 37 H 0.248 0.752 38 H 0.119 0.881 39 H 0.103 0.897 40 H 0.110 0.890 41 H 0.122 0.878 42 H 0.219 0.781 43 H 0.094 0.906 44 H 0.068 0.932 45 H 0.099 0.901 46 H 0.100 0.900 47 H 0.032 0.968 48 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 21.502 -12.571 -5.772 25.568 hybrid contribution -0.085 2.939 0.278 2.954 sum 21.417 -9.632 -5.494 24.117 Atomic orbital electron populations 1.70046 1.07392 1.27834 1.51025 1.25741 0.95551 1.02574 0.94617 0.85649 0.78558 0.79583 0.78457 1.19664 1.20681 1.19842 1.21946 0.93101 0.93128 1.51233 0.93087 1.19429 0.91096 0.86378 0.95715 1.62418 1.17408 1.44055 1.02035 1.22333 0.95096 0.96429 0.94321 1.21899 0.95602 0.98026 0.84186 1.47385 1.05313 1.74953 1.08771 1.15983 0.81184 0.77467 0.84632 1.90858 1.71274 1.60341 1.29101 1.45199 1.06947 1.79191 1.07277 1.20792 0.77354 0.95647 0.99878 0.91417 1.21775 0.94921 1.02092 0.96206 1.20161 0.92514 0.91734 1.02824 1.22784 0.90676 0.97838 0.98297 1.76915 1.17497 0.98445 1.21598 1.46351 1.08758 1.12930 1.50847 0.70217 1.22545 0.85102 1.00497 0.99621 1.20152 0.96540 0.96623 1.13321 1.20266 0.89364 0.97646 1.01190 1.21479 0.92769 0.97027 0.86584 1.22200 0.95490 0.95811 0.93702 0.92581 0.97062 0.97366 0.89861 0.96377 0.89204 0.87472 0.75191 0.88060 0.89723 0.89048 0.87794 0.78058 0.90642 0.93203 0.90134 0.90027 0.96764 0.91025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.82 13.29 21.45 0.28 -53.53 16 2 C 0.01 0.82 5.46 84.66 0.46 1.29 16 3 Si 0.95 43.40 29.54 68.60 2.03 45.42 16 4 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 5 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 6 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 7 C -0.56 -29.99 7.75 25.60 0.20 -29.79 16 8 H 0.05 2.77 5.88 -2.91 -0.02 2.75 16 9 C 0.20 10.10 5.11 85.56 0.44 10.54 16 10 N -0.54 -21.52 4.83 -899.84 -4.35 -25.86 16 11 C 0.05 1.59 5.24 86.38 0.45 2.04 16 12 C 0.13 3.00 6.60 86.35 0.57 3.57 16 13 N -0.63 -18.20 3.01 -835.93 -2.52 -20.72 16 14 C 0.71 21.02 8.27 179.05 1.48 22.50 16 15 O -0.63 -23.92 15.45 -3.99 -0.06 -23.99 16 16 N -0.73 -15.28 4.99 -457.14 -2.28 -17.56 16 17 C 0.17 3.32 2.44 45.13 0.11 3.43 16 18 H 0.07 1.69 7.47 -2.39 -0.02 1.67 16 19 C -0.11 -1.37 5.33 30.73 0.16 -1.21 16 20 C -0.03 -0.45 6.31 30.05 0.19 -0.26 16 21 C 0.07 1.45 7.10 43.43 0.31 1.76 16 22 N -0.32 -6.95 12.68 -47.14 -0.60 -7.54 16 23 N -0.48 -7.79 7.37 -57.88 -0.43 -8.22 16 24 H 0.45 4.26 8.96 -213.17 -1.91 2.35 16 25 C 0.07 1.15 11.95 83.33 1.00 2.14 16 26 C -0.25 -5.18 5.89 -20.10 -0.12 -5.29 16 27 C -0.04 -0.96 5.85 30.03 0.18 -0.78 16 28 C 0.15 4.63 6.58 86.35 0.57 5.20 16 29 C 0.06 2.21 5.15 86.38 0.44 2.66 16 30 H 0.27 14.60 8.31 -92.70 -0.77 13.83 16 31 H 0.01 0.60 8.07 -2.39 -0.02 0.58 16 32 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 33 H 0.08 2.68 8.05 -2.39 -0.02 2.66 16 34 H 0.02 0.69 6.92 -2.39 -0.02 0.68 16 35 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 36 H 0.11 1.75 5.63 -2.39 -0.01 1.74 16 37 H 0.41 6.18 6.10 -92.70 -0.57 5.62 16 38 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 39 H 0.08 0.91 8.10 -2.39 -0.02 0.89 16 40 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 41 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 42 H 0.20 2.10 8.06 -2.91 -0.02 2.07 16 43 H 0.08 1.52 8.14 -2.38 -0.02 1.50 16 44 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 45 H 0.08 2.70 7.09 -2.39 -0.02 2.68 16 46 H 0.08 2.37 8.14 -2.38 -0.02 2.35 16 47 H 0.01 0.62 6.79 -2.39 -0.02 0.61 16 48 H 0.07 2.81 8.11 -2.39 -0.02 2.79 16 Total: -1.00 -74.42 376.19 -2.96 -77.38 By element: Atomic # 1 Polarization: 18.32 SS G_CDS: -1.48 Total: 16.84 kcal Atomic # 6 Polarization: 11.35 SS G_CDS: 6.44 Total: 17.79 kcal Atomic # 7 Polarization: -123.56 SS G_CDS: -9.88 Total: -133.44 kcal Atomic # 8 Polarization: -23.92 SS G_CDS: -0.06 Total: -23.99 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.42 kcal Total: -74.42 -2.96 -77.38 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601592801.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.913 kcal (2) G-P(sol) polarization free energy of solvation -74.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.379 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds