Wall clock time and date at job start Tue Mar 31 2020 18:08:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 119.99774 * 2 1 4 4 H 1.48496 * 109.46995 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.46929 * 300.00191 * 3 2 1 6 6 H 1.48502 * 109.47190 * 59.99885 * 3 2 1 7 7 C 1.37870 * 120.00081 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99734 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00013 * 359.97438 * 7 2 1 10 10 N 1.46907 * 109.47114 * 180.02562 * 9 7 2 11 11 C 1.46900 * 110.99940 * 294.30768 * 10 9 7 12 12 C 1.53244 * 109.33866 * 172.74710 * 11 10 9 13 13 N 1.47083 * 108.52124 * 53.82762 * 12 11 10 14 14 C 1.34772 * 120.87775 * 128.79522 * 13 12 11 15 15 O 1.21588 * 119.99742 * 175.02774 * 14 13 12 16 16 N 1.34775 * 120.00672 * 355.02374 * 14 13 12 17 17 C 1.46491 * 120.00603 * 185.08424 * 16 14 13 18 18 H 1.09004 * 109.51240 * 325.09967 * 17 16 14 19 19 C 1.53147 * 109.51509 * 205.00355 * 17 16 14 20 20 C 1.53256 * 109.50401 * 170.59466 * 19 17 16 21 21 N 1.46473 * 108.80261 * 50.34684 * 20 19 17 22 22 C 1.36311 * 127.77364 * 162.90362 * 21 20 19 23 23 C 1.34861 * 106.68911 * 180.02562 * 22 21 20 24 24 N 1.34294 * 108.06651 * 359.97438 * 23 22 21 25 25 C 1.30092 * 109.21414 * 359.97217 * 24 23 22 26 26 C 1.51039 * 127.38643 * 180.11178 * 25 24 23 27 27 C 1.47083 * 118.23498 * 308.81306 * 13 12 11 28 28 C 1.46902 * 110.99958 * 170.00202 * 10 9 7 29 29 H 0.97006 * 120.00469 * 359.97438 * 1 2 3 30 30 H 1.08991 * 109.47573 * 300.00305 * 9 7 2 31 31 H 1.09006 * 109.47294 * 60.00551 * 9 7 2 32 32 H 1.09009 * 109.49285 * 292.69976 * 11 10 9 33 33 H 1.08994 * 109.49650 * 52.78414 * 11 10 9 34 34 H 1.09002 * 109.62383 * 294.11954 * 12 11 10 35 35 H 1.08998 * 109.62752 * 173.54072 * 12 11 10 36 36 H 0.97003 * 119.99243 * 5.09076 * 16 14 13 37 37 H 1.09001 * 109.46526 * 290.60061 * 19 17 16 38 38 H 1.08991 * 109.46635 * 50.58628 * 19 17 16 39 39 H 1.08999 * 109.58078 * 170.14146 * 20 19 17 40 40 H 1.08997 * 109.58049 * 290.55099 * 20 19 17 41 41 H 1.08004 * 126.65999 * 0.03731 * 22 21 20 42 42 H 1.07994 * 125.96657 * 179.97438 * 23 22 21 43 43 H 1.08996 * 109.71945 * 44.26735 * 26 25 24 44 44 H 1.09002 * 109.71656 * 283.61846 * 26 25 24 45 45 H 1.08990 * 109.63114 * 291.47660 * 27 13 12 46 46 H 1.09005 * 109.62429 * 170.89765 * 27 13 12 47 47 H 1.08993 * 109.49528 * 307.21716 * 28 10 9 48 48 H 1.09003 * 109.48974 * 67.26703 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1939 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 7 2.2057 -3.6157 -0.0005 11 6 2.9769 -3.6489 -1.2504 12 6 4.0792 -4.7076 -1.1385 13 7 3.4617 -5.9862 -0.7544 14 6 3.7119 -7.1121 -1.4516 15 8 3.2662 -8.1763 -1.0679 16 7 4.4559 -7.0585 -2.5741 17 6 4.6352 -8.2605 -3.3922 18 1 4.6812 -9.1371 -2.7460 19 6 5.9364 -8.1457 -4.1916 20 6 6.2449 -9.4886 -4.8625 21 7 5.0502 -9.9450 -5.5766 22 6 4.9715 -10.8969 -6.5491 23 6 3.6741 -10.9772 -6.9084 24 7 2.9821 -10.0943 -6.1700 25 6 3.7980 -9.4730 -5.3696 26 6 3.4557 -8.4009 -4.3623 27 6 2.5639 -6.0031 0.4104 28 6 1.5213 -4.8935 0.2376 29 1 -0.4851 0.8401 0.0004 30 1 0.6247 -2.5571 0.8896 31 1 0.6241 -2.5567 -0.8904 32 1 2.3151 -3.8992 -2.0796 33 1 3.4273 -2.6721 -1.4260 34 1 4.8004 -4.4064 -0.3788 35 1 4.5804 -4.8173 -2.1002 36 1 4.8727 -6.2240 -2.8403 37 1 5.8271 -7.3751 -4.9548 38 1 6.7527 -7.8790 -3.5205 39 1 7.0668 -9.3645 -5.5676 40 1 6.5193 -10.2215 -4.1038 41 1 5.7894 -11.4750 -6.9534 42 1 3.2634 -11.6363 -7.6588 43 1 2.5586 -8.6857 -3.8126 44 1 3.2881 -7.4540 -4.8756 45 1 3.1394 -5.8264 1.3190 46 1 2.0633 -6.9694 0.4728 47 1 0.9160 -4.8191 1.1410 48 1 0.8793 -5.1260 -0.6121 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601593919.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:08:53 Heat of formation + Delta-G solvation = 53.336307 kcal Electronic energy + Delta-G solvation = -28808.752998 eV Core-core repulsion = 24900.049424 eV Total energy + Delta-G solvation = -3908.703574 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.56792 -40.39887 -38.09641 -36.94291 -34.53542 -34.36565 -32.64655 -32.07975 -30.69256 -30.09349 -28.57098 -27.80851 -25.55742 -24.59643 -23.38803 -22.64843 -21.97098 -21.54174 -20.71722 -19.80214 -19.05555 -18.01136 -17.30581 -16.76473 -16.39097 -15.99398 -15.56049 -15.08392 -14.81040 -14.67714 -14.49515 -14.44034 -14.17141 -14.05889 -13.95441 -13.67251 -13.53769 -13.28057 -12.89083 -12.64248 -12.29966 -12.25308 -11.92610 -11.76569 -11.49696 -11.30411 -11.08884 -11.01631 -10.78390 -10.68863 -10.54810 -10.17752 -10.04575 -9.90020 -9.85734 -9.37970 -9.28511 -8.57804 -8.52444 -8.40792 -7.35766 -6.09262 -4.11536 1.79103 2.43971 2.51061 2.94664 3.18505 3.25950 3.33843 3.37107 3.69086 4.00485 4.04847 4.17261 4.35505 4.40803 4.57835 4.69727 4.75918 4.82127 4.91452 5.16128 5.19368 5.22671 5.23957 5.26926 5.35206 5.38660 5.43623 5.61778 5.63436 5.73452 5.73713 5.83067 6.01067 6.03469 6.26733 6.27760 6.39837 6.42474 6.53083 6.57889 6.88976 6.95409 7.19505 7.25580 7.70582 7.89863 7.90387 7.98574 8.09102 8.43992 8.57187 8.95847 9.53169 11.01518 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.019903 B = 0.002250 C = 0.002199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1406.511393 B =12440.821881 C =12728.311121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.055 3.945 3 Si 0.898 3.102 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.509 4.509 8 H 0.064 0.936 9 C 0.193 3.807 10 N -0.535 5.535 11 C 0.050 3.950 12 C 0.115 3.885 13 N -0.623 5.623 14 C 0.709 3.291 15 O -0.594 6.594 16 N -0.745 5.745 17 C 0.164 3.836 18 H 0.097 0.903 19 C -0.145 4.145 20 C 0.110 3.890 21 N -0.460 5.460 22 C -0.058 4.058 23 C -0.031 4.031 24 N -0.488 5.488 25 C 0.218 3.782 26 C -0.047 4.047 27 C 0.137 3.863 28 C 0.039 3.961 29 H 0.261 0.739 30 H 0.032 0.968 31 H -0.009 1.009 32 H 0.025 0.975 33 H 0.097 0.903 34 H 0.076 0.924 35 H 0.069 0.931 36 H 0.398 0.602 37 H 0.083 0.917 38 H 0.099 0.901 39 H 0.096 0.904 40 H 0.089 0.911 41 H 0.174 0.826 42 H 0.170 0.830 43 H 0.102 0.898 44 H 0.092 0.908 45 H 0.071 0.929 46 H 0.088 0.912 47 H 0.082 0.918 48 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.351 -18.309 -10.415 26.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.146 4.146 3 Si 0.726 3.274 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.548 4.548 8 H 0.082 0.918 9 C 0.068 3.932 10 N -0.260 5.260 11 C -0.079 4.079 12 C -0.008 4.008 13 N -0.360 5.360 14 C 0.411 3.589 15 O -0.472 6.472 16 N -0.402 5.402 17 C 0.057 3.943 18 H 0.115 0.885 19 C -0.183 4.183 20 C -0.013 4.013 21 N -0.144 5.144 22 C -0.191 4.191 23 C -0.179 4.179 24 N -0.206 5.206 25 C -0.045 4.045 26 C -0.088 4.088 27 C 0.014 3.986 28 C -0.090 4.090 29 H 0.071 0.929 30 H 0.050 0.950 31 H 0.009 0.991 32 H 0.043 0.957 33 H 0.115 0.885 34 H 0.095 0.905 35 H 0.087 0.913 36 H 0.235 0.765 37 H 0.102 0.898 38 H 0.118 0.882 39 H 0.114 0.886 40 H 0.107 0.893 41 H 0.192 0.808 42 H 0.187 0.813 43 H 0.120 0.880 44 H 0.110 0.890 45 H 0.089 0.911 46 H 0.107 0.893 47 H 0.100 0.900 48 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 14.476 -18.707 -9.710 25.570 hybrid contribution 0.883 1.101 -0.937 1.694 sum 15.359 -17.606 -10.646 25.675 Atomic orbital electron populations 1.69967 1.06089 1.26780 1.50753 1.25004 0.94865 0.99381 0.95386 0.86444 0.79986 0.83428 0.77553 1.19670 1.21130 1.20992 1.21159 0.93451 0.89853 1.50325 0.91780 1.19736 0.90003 0.87156 0.96285 1.62078 1.28117 1.02787 1.33009 1.22322 0.95131 0.98885 0.91584 1.21881 0.96345 0.83147 0.99465 1.47404 1.49629 1.07113 1.31819 1.15794 0.79180 0.84114 0.79810 1.90903 1.57458 1.28118 1.70764 1.45203 1.56456 1.13029 1.25554 1.20710 0.92731 0.89481 0.91370 0.88500 1.22194 0.98726 0.96885 1.00493 1.21900 0.86258 0.96559 0.96593 1.45446 1.08694 1.30272 1.29986 1.22543 1.00519 0.98754 0.97260 1.22397 0.90273 1.01885 1.03301 1.70085 1.32570 1.09637 1.08357 1.23208 0.80140 1.00543 1.00616 1.20660 1.00227 0.94913 0.92951 1.21652 0.91032 0.99418 0.86546 1.22445 0.95030 0.90527 1.01006 0.92891 0.94978 0.99081 0.95675 0.88523 0.90547 0.91296 0.76459 0.89822 0.88240 0.88604 0.89292 0.80841 0.81323 0.88010 0.88966 0.91109 0.89324 0.89974 0.95477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.00 13.29 55.43 0.74 -25.26 16 2 C 0.06 1.51 5.46 -17.82 -0.10 1.42 16 3 Si 0.90 20.83 29.54 -169.99 -5.02 15.81 16 4 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 5 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 6 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.51 -13.58 8.41 -34.44 -0.29 -13.87 16 8 H 0.06 1.67 7.13 -52.49 -0.37 1.29 16 9 C 0.19 4.81 4.72 -4.97 -0.02 4.78 16 10 N -0.53 -10.72 4.62 -235.76 -1.09 -11.81 16 11 C 0.05 0.86 5.46 -3.70 -0.02 0.84 16 12 C 0.12 1.49 6.59 -3.60 -0.02 1.46 16 13 N -0.62 -8.88 3.01 -178.19 -0.54 -9.42 16 14 C 0.71 10.05 8.28 -86.92 -0.72 9.34 16 15 O -0.59 -10.44 15.45 5.29 0.08 -10.36 16 16 N -0.74 -7.45 5.00 -58.42 -0.29 -7.74 16 17 C 0.16 1.46 2.52 -67.67 -0.17 1.29 16 18 H 0.10 1.05 7.49 -51.93 -0.39 0.66 16 19 C -0.14 -0.75 5.41 -26.52 -0.14 -0.90 16 20 C 0.11 0.56 6.98 -3.92 -0.03 0.53 16 21 N -0.46 -4.06 3.13 -113.76 -0.36 -4.41 16 22 C -0.06 -0.49 11.64 -16.76 -0.20 -0.68 16 23 C -0.03 -0.33 11.87 -17.67 -0.21 -0.54 16 24 N -0.49 -6.69 11.24 -10.62 -0.12 -6.81 16 25 C 0.22 2.55 7.65 -155.25 -1.19 1.36 16 26 C -0.05 -0.51 5.91 -27.53 -0.16 -0.67 16 27 C 0.14 2.07 6.58 -3.60 -0.02 2.05 16 28 C 0.04 0.69 5.62 -3.70 -0.02 0.67 16 29 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 30 H 0.03 0.86 7.97 -51.93 -0.41 0.45 16 31 H -0.01 -0.23 8.13 -51.93 -0.42 -0.66 16 32 H 0.03 0.45 8.14 -51.92 -0.42 0.03 16 33 H 0.10 1.76 6.67 -51.93 -0.35 1.42 16 34 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.07 0.65 5.63 -51.93 -0.29 0.36 16 36 H 0.40 3.11 6.10 -40.82 -0.25 2.86 16 37 H 0.08 0.41 8.12 -51.93 -0.42 -0.01 16 38 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.10 0.28 8.14 -51.93 -0.42 -0.14 16 40 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.17 0.83 8.06 -52.48 -0.42 0.41 16 42 H 0.17 1.36 8.06 -52.49 -0.42 0.94 16 43 H 0.10 1.33 8.14 -51.93 -0.42 0.91 16 44 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 45 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 46 H 0.09 1.35 7.10 -51.93 -0.37 0.99 16 47 H 0.08 1.40 7.99 -51.93 -0.41 0.98 16 48 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 LS Contribution 379.73 15.07 5.72 5.72 Total: -1.00 -34.67 379.73 -11.67 -46.33 By element: Atomic # 1 Polarization: 8.34 SS G_CDS: -7.48 Total: 0.87 kcal Atomic # 6 Polarization: 10.40 SS G_CDS: -3.31 Total: 7.08 kcal Atomic # 7 Polarization: -63.80 SS G_CDS: -1.66 Total: -65.45 kcal Atomic # 8 Polarization: -10.44 SS G_CDS: 0.08 Total: -10.36 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -34.67 -11.67 -46.33 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601593919.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.670 kcal (2) G-P(sol) polarization free energy of solvation -34.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.334 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds