Wall clock time and date at job start Tue Mar 31 2020 18:08:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 119.99774 * 2 1 4 4 H 1.48496 * 109.46995 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.46929 * 300.00191 * 3 2 1 6 6 H 1.48502 * 109.47190 * 59.99885 * 3 2 1 7 7 C 1.37870 * 120.00081 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99734 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00013 * 359.97438 * 7 2 1 10 10 N 1.46907 * 109.47114 * 180.02562 * 9 7 2 11 11 C 1.46900 * 110.99940 * 294.30768 * 10 9 7 12 12 C 1.53244 * 109.33866 * 172.74710 * 11 10 9 13 13 N 1.47083 * 108.52124 * 53.82762 * 12 11 10 14 14 C 1.34772 * 120.87775 * 128.79522 * 13 12 11 15 15 O 1.21588 * 119.99742 * 175.02774 * 14 13 12 16 16 N 1.34775 * 120.00672 * 355.02374 * 14 13 12 17 17 C 1.46491 * 120.00603 * 185.08424 * 16 14 13 18 18 H 1.09004 * 109.51240 * 325.09967 * 17 16 14 19 19 C 1.53147 * 109.51509 * 205.00355 * 17 16 14 20 20 C 1.53256 * 109.50401 * 170.59466 * 19 17 16 21 21 N 1.46473 * 108.80261 * 50.34684 * 20 19 17 22 22 C 1.36311 * 127.77364 * 162.90362 * 21 20 19 23 23 C 1.34861 * 106.68911 * 180.02562 * 22 21 20 24 24 N 1.34294 * 108.06651 * 359.97438 * 23 22 21 25 25 C 1.30092 * 109.21414 * 359.97217 * 24 23 22 26 26 C 1.51039 * 127.38643 * 180.11178 * 25 24 23 27 27 C 1.47083 * 118.23498 * 308.81306 * 13 12 11 28 28 C 1.46902 * 110.99958 * 170.00202 * 10 9 7 29 29 H 0.97006 * 120.00469 * 359.97438 * 1 2 3 30 30 H 1.08991 * 109.47573 * 300.00305 * 9 7 2 31 31 H 1.09006 * 109.47294 * 60.00551 * 9 7 2 32 32 H 1.09009 * 109.49285 * 292.69976 * 11 10 9 33 33 H 1.08994 * 109.49650 * 52.78414 * 11 10 9 34 34 H 1.09002 * 109.62383 * 294.11954 * 12 11 10 35 35 H 1.08998 * 109.62752 * 173.54072 * 12 11 10 36 36 H 0.97003 * 119.99243 * 5.09076 * 16 14 13 37 37 H 1.09001 * 109.46526 * 290.60061 * 19 17 16 38 38 H 1.08991 * 109.46635 * 50.58628 * 19 17 16 39 39 H 1.08999 * 109.58078 * 170.14146 * 20 19 17 40 40 H 1.08997 * 109.58049 * 290.55099 * 20 19 17 41 41 H 1.08004 * 126.65999 * 0.03731 * 22 21 20 42 42 H 1.07994 * 125.96657 * 179.97438 * 23 22 21 43 43 H 1.08996 * 109.71945 * 44.26735 * 26 25 24 44 44 H 1.09002 * 109.71656 * 283.61846 * 26 25 24 45 45 H 1.08990 * 109.63114 * 291.47660 * 27 13 12 46 46 H 1.09005 * 109.62429 * 170.89765 * 27 13 12 47 47 H 1.08993 * 109.49528 * 307.21716 * 28 10 9 48 48 H 1.09003 * 109.48974 * 67.26703 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1939 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 7 2.2057 -3.6157 -0.0005 11 6 2.9769 -3.6489 -1.2504 12 6 4.0792 -4.7076 -1.1385 13 7 3.4617 -5.9862 -0.7544 14 6 3.7119 -7.1121 -1.4516 15 8 3.2662 -8.1763 -1.0679 16 7 4.4559 -7.0585 -2.5741 17 6 4.6352 -8.2605 -3.3922 18 1 4.6812 -9.1371 -2.7460 19 6 5.9364 -8.1457 -4.1916 20 6 6.2449 -9.4886 -4.8625 21 7 5.0502 -9.9450 -5.5766 22 6 4.9715 -10.8969 -6.5491 23 6 3.6741 -10.9772 -6.9084 24 7 2.9821 -10.0943 -6.1700 25 6 3.7980 -9.4730 -5.3696 26 6 3.4557 -8.4009 -4.3623 27 6 2.5639 -6.0031 0.4104 28 6 1.5213 -4.8935 0.2376 29 1 -0.4851 0.8401 0.0004 30 1 0.6247 -2.5571 0.8896 31 1 0.6241 -2.5567 -0.8904 32 1 2.3151 -3.8992 -2.0796 33 1 3.4273 -2.6721 -1.4260 34 1 4.8004 -4.4064 -0.3788 35 1 4.5804 -4.8173 -2.1002 36 1 4.8727 -6.2240 -2.8403 37 1 5.8271 -7.3751 -4.9548 38 1 6.7527 -7.8790 -3.5205 39 1 7.0668 -9.3645 -5.5676 40 1 6.5193 -10.2215 -4.1038 41 1 5.7894 -11.4750 -6.9534 42 1 3.2634 -11.6363 -7.6588 43 1 2.5586 -8.6857 -3.8126 44 1 3.2881 -7.4540 -4.8756 45 1 3.1394 -5.8264 1.3190 46 1 2.0633 -6.9694 0.4728 47 1 0.9160 -4.8191 1.1410 48 1 0.8793 -5.1260 -0.6121 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601593919.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:08:52 Heat of formation + Delta-G solvation = 28.996665 kcal Electronic energy + Delta-G solvation = -28809.808444 eV Core-core repulsion = 24900.049424 eV Total energy + Delta-G solvation = -3909.759020 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.27794 -41.52038 -39.33511 -37.89491 -35.97033 -35.25866 -34.40472 -33.16381 -31.93570 -30.74339 -29.99609 -28.88107 -27.15711 -25.31137 -24.69667 -23.95305 -23.10597 -22.40576 -21.95715 -20.79267 -19.98219 -19.07090 -18.48330 -17.94320 -17.65231 -16.85426 -16.71934 -16.54535 -16.00535 -15.93777 -15.62311 -15.47020 -15.33394 -15.13843 -14.85871 -14.73946 -14.60307 -14.38606 -14.08263 -13.82853 -13.54843 -13.15219 -12.99114 -12.93034 -12.74680 -12.60575 -12.42895 -12.35636 -12.27908 -12.13384 -12.10208 -11.76470 -11.26385 -11.24007 -10.96722 -10.61857 -10.55086 -10.35990 -9.64105 -9.29762 -9.04138 -8.19174 -6.29641 1.09358 1.43985 1.45032 1.49960 1.58079 1.86655 2.06726 2.14863 2.41883 2.74020 3.13560 3.23664 3.38656 3.52636 3.54516 3.77602 3.96752 4.06194 4.11507 4.15437 4.17864 4.25527 4.28069 4.43489 4.46012 4.52387 4.56789 4.63071 4.65053 4.76214 4.84887 4.85954 4.91325 4.95897 5.00167 5.03475 5.19882 5.24023 5.31723 5.41864 5.43895 5.64950 5.84552 5.91072 6.03982 6.22774 6.28839 6.56346 6.86682 6.90050 7.15361 7.40592 7.48536 8.92428 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.019903 B = 0.002250 C = 0.002199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1406.511393 B =12440.821881 C =12728.311121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.002 4.002 3 Si 0.972 3.028 4 H -0.256 1.256 5 H -0.282 1.282 6 H -0.283 1.283 7 C -0.518 4.518 8 H 0.072 0.928 9 C 0.207 3.793 10 N -0.536 5.536 11 C 0.048 3.952 12 C 0.127 3.873 13 N -0.627 5.627 14 C 0.707 3.293 15 O -0.631 6.631 16 N -0.726 5.726 17 C 0.169 3.831 18 H 0.077 0.923 19 C -0.134 4.134 20 C 0.103 3.897 21 N -0.455 5.455 22 C -0.036 4.036 23 C -0.067 4.067 24 N -0.538 5.538 25 C 0.193 3.807 26 C -0.042 4.042 27 C 0.147 3.853 28 C 0.042 3.958 29 H 0.263 0.737 30 H 0.003 0.997 31 H -0.043 1.043 32 H 0.012 0.988 33 H 0.088 0.912 34 H 0.089 0.911 35 H 0.111 0.889 36 H 0.413 0.587 37 H 0.093 0.907 38 H 0.127 0.873 39 H 0.130 0.870 40 H 0.101 0.899 41 H 0.216 0.784 42 H 0.182 0.818 43 H 0.065 0.935 44 H 0.094 0.906 45 H 0.082 0.918 46 H 0.086 0.914 47 H 0.081 0.919 48 H 0.012 0.988 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.813 -18.363 -11.366 29.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.200 4.200 3 Si 0.796 3.204 4 H -0.179 1.179 5 H -0.208 1.208 6 H -0.209 1.209 7 C -0.556 4.556 8 H 0.090 0.910 9 C 0.081 3.919 10 N -0.261 5.261 11 C -0.081 4.081 12 C 0.004 3.996 13 N -0.363 5.363 14 C 0.409 3.591 15 O -0.512 6.512 16 N -0.384 5.384 17 C 0.062 3.938 18 H 0.096 0.904 19 C -0.172 4.172 20 C -0.018 4.018 21 N -0.138 5.138 22 C -0.170 4.170 23 C -0.214 4.214 24 N -0.258 5.258 25 C -0.071 4.071 26 C -0.082 4.082 27 C 0.023 3.977 28 C -0.087 4.087 29 H 0.072 0.928 30 H 0.022 0.978 31 H -0.025 1.025 32 H 0.031 0.969 33 H 0.106 0.894 34 H 0.107 0.893 35 H 0.129 0.871 36 H 0.252 0.748 37 H 0.112 0.888 38 H 0.145 0.855 39 H 0.148 0.852 40 H 0.120 0.880 41 H 0.233 0.767 42 H 0.199 0.801 43 H 0.084 0.916 44 H 0.112 0.888 45 H 0.100 0.900 46 H 0.105 0.895 47 H 0.099 0.901 48 H 0.030 0.970 Dipole moment (debyes) X Y Z Total from point charges 19.000 -18.758 -10.679 28.756 hybrid contribution -0.555 1.017 -0.684 1.345 sum 18.445 -17.741 -11.363 28.002 Atomic orbital electron populations 1.70112 1.07963 1.27820 1.51956 1.25971 0.95690 1.03437 0.94901 0.85293 0.79283 0.78385 0.77397 1.17937 1.20775 1.20900 1.21483 0.93893 0.90525 1.49677 0.90958 1.19387 0.90140 0.89074 0.93306 1.62018 1.26913 1.02408 1.34778 1.22393 0.95710 1.00221 0.89728 1.21894 0.94599 0.80912 1.02205 1.47412 1.49572 1.07713 1.31639 1.15943 0.79281 0.83371 0.80487 1.90885 1.58957 1.29510 1.71867 1.45050 1.55126 1.14166 1.24044 1.20739 0.94134 0.88201 0.90714 0.90438 1.22185 0.96891 0.97536 1.00575 1.22287 0.85474 0.96540 0.97482 1.45690 1.08802 1.29625 1.29704 1.23161 1.00662 0.97505 0.95665 1.22826 0.91603 1.02619 1.04393 1.69980 1.34766 1.11205 1.09850 1.23148 0.81463 1.01339 1.01113 1.20534 0.99755 0.94897 0.93036 1.21461 0.90701 0.97938 0.87574 1.22466 0.95715 0.90202 1.00315 0.92811 0.97846 1.02508 0.96945 0.89362 0.89319 0.87110 0.74770 0.88848 0.85479 0.85172 0.88048 0.76711 0.80074 0.91639 0.88816 0.89957 0.89523 0.90110 0.96977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.79 13.29 21.44 0.28 -55.51 16 2 C 0.00 -0.12 5.46 84.65 0.46 0.34 16 3 Si 0.97 42.56 29.54 68.60 2.03 44.59 16 4 H -0.26 -10.43 7.11 99.48 0.71 -9.73 16 5 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 6 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 7 C -0.52 -27.89 8.41 25.60 0.22 -27.67 16 8 H 0.07 3.70 7.13 -2.91 -0.02 3.68 16 9 C 0.21 10.75 4.72 85.55 0.40 11.16 16 10 N -0.54 -21.86 4.62 -899.79 -4.16 -26.01 16 11 C 0.05 1.64 5.46 86.38 0.47 2.11 16 12 C 0.13 2.95 6.59 86.35 0.57 3.52 16 13 N -0.63 -17.03 3.01 -835.92 -2.52 -19.54 16 14 C 0.71 19.29 8.28 179.06 1.48 20.77 16 15 O -0.63 -22.28 15.45 -3.99 -0.06 -22.34 16 16 N -0.73 -12.96 5.00 -457.00 -2.28 -15.25 16 17 C 0.17 2.75 2.52 45.17 0.11 2.86 16 18 H 0.08 1.62 7.49 -2.38 -0.02 1.60 16 19 C -0.13 -0.88 5.41 30.73 0.17 -0.71 16 20 C 0.10 0.62 6.98 86.47 0.60 1.22 16 21 N -0.46 -6.97 3.13 -513.83 -1.61 -8.58 16 22 C -0.04 -0.51 11.64 83.22 0.97 0.46 16 23 C -0.07 -1.41 11.87 83.54 0.99 -0.42 16 24 N -0.54 -15.24 11.24 -187.52 -2.11 -17.35 16 25 C 0.19 4.49 7.65 138.23 1.06 5.55 16 26 C -0.04 -0.92 5.91 30.08 0.18 -0.74 16 27 C 0.15 4.40 6.58 86.35 0.57 4.97 16 28 C 0.04 1.52 5.62 86.38 0.49 2.01 16 29 H 0.26 14.73 8.31 -92.70 -0.77 13.96 16 30 H 0.00 0.19 7.97 -2.39 -0.02 0.18 16 31 H -0.04 -2.46 8.13 -2.38 -0.02 -2.48 16 32 H 0.01 0.45 8.14 -2.38 -0.02 0.43 16 33 H 0.09 3.14 6.67 -2.39 -0.02 3.13 16 34 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 35 H 0.11 1.65 5.63 -2.39 -0.01 1.64 16 36 H 0.41 4.92 6.10 -92.71 -0.57 4.35 16 37 H 0.09 0.51 8.12 -2.39 -0.02 0.49 16 38 H 0.13 0.23 8.14 -2.39 -0.02 0.21 16 39 H 0.13 0.01 8.14 -2.39 -0.02 -0.01 16 40 H 0.10 0.44 8.14 -2.39 -0.02 0.42 16 41 H 0.22 1.07 8.06 -2.91 -0.02 1.05 16 42 H 0.18 2.92 8.06 -2.91 -0.02 2.90 16 43 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 44 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 45 H 0.08 2.30 8.14 -2.39 -0.02 2.29 16 46 H 0.09 2.67 7.10 -2.38 -0.02 2.65 16 47 H 0.08 2.88 7.99 -2.39 -0.02 2.86 16 48 H 0.01 0.46 8.14 -2.39 -0.02 0.45 16 Total: -1.00 -80.52 379.73 -1.29 -81.81 By element: Atomic # 1 Polarization: 12.35 SS G_CDS: 0.40 Total: 12.75 kcal Atomic # 6 Polarization: 16.69 SS G_CDS: 8.74 Total: 25.42 kcal Atomic # 7 Polarization: -129.84 SS G_CDS: -12.39 Total: -142.24 kcal Atomic # 8 Polarization: -22.28 SS G_CDS: -0.06 Total: -22.34 kcal Atomic # 14 Polarization: 42.56 SS G_CDS: 2.03 Total: 44.59 kcal Total: -80.52 -1.29 -81.81 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601593919.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.806 kcal (2) G-P(sol) polarization free energy of solvation -80.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.810 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds