Wall clock time and date at job start Tue Mar 31 2020 18:12:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86797 * 119.99803 * 2 1 4 4 H 1.48509 * 109.47039 * 240.00676 * 3 2 1 5 5 H 1.48503 * 109.47311 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.47294 * 120.00599 * 3 2 1 7 7 C 1.37880 * 120.00107 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99684 * 179.97438 * 7 2 1 9 9 C 1.50693 * 119.99994 * 359.97438 * 7 2 1 10 10 N 1.46903 * 109.47259 * 179.97438 * 9 7 2 11 11 C 1.46898 * 110.99985 * 169.99963 * 10 9 7 12 12 C 1.53242 * 109.33836 * 187.25405 * 11 10 9 13 13 N 1.47074 * 108.52156 * 306.17241 * 12 11 10 14 14 C 1.34782 * 120.87848 * 231.18713 * 13 12 11 15 15 O 1.21573 * 119.99734 * 184.13150 * 14 13 12 16 16 C 1.47710 * 120.00137 * 4.13114 * 14 13 12 17 17 C 1.41500 * 126.51769 * 173.54161 * 16 14 13 18 18 C 1.35364 * 105.50243 * 180.02562 * 17 16 14 19 19 C 1.50696 * 126.38266 * 180.02562 * 18 17 16 20 20 H 1.08995 * 110.28138 * 334.36928 * 19 18 17 21 21 C 1.54594 * 110.30813 * 212.17164 * 19 18 17 22 22 C 1.54944 * 102.92396 * 219.12928 * 21 19 18 23 23 N 1.48534 * 103.22201 * 37.41333 * 22 21 19 24 24 C 1.47898 * 105.82627 * 320.79383 * 23 22 21 25 25 N 1.35034 * 107.23002 * 0.02562 * 18 17 16 26 26 H 0.96996 * 124.88357 * 179.73214 * 25 18 17 27 27 N 1.28467 * 110.22939 * 359.97438 * 25 18 17 28 28 C 1.47081 * 118.23994 * 51.45578 * 13 12 11 29 29 C 1.46900 * 110.99981 * 294.30232 * 10 9 7 30 30 H 0.96995 * 120.00107 * 359.97438 * 1 2 3 31 31 H 1.09007 * 109.47656 * 59.99942 * 9 7 2 32 32 H 1.09005 * 109.47539 * 300.00126 * 9 7 2 33 33 H 1.08999 * 109.49594 * 67.29397 * 11 10 9 34 34 H 1.08999 * 109.51852 * 307.22222 * 11 10 9 35 35 H 1.08998 * 109.62957 * 186.45505 * 12 11 10 36 36 H 1.09005 * 109.62933 * 65.88016 * 12 11 10 37 37 H 1.08000 * 127.24932 * 0.05064 * 17 16 14 38 38 H 1.08997 * 110.72586 * 337.48519 * 21 19 18 39 39 H 1.08999 * 110.72532 * 100.77527 * 21 19 18 40 40 H 1.08994 * 110.66675 * 278.98330 * 22 21 19 41 41 H 1.08997 * 110.66735 * 155.84613 * 22 21 19 42 42 H 1.00904 * 110.99384 * 200.27534 * 23 22 21 43 43 H 1.09005 * 109.91412 * 265.98041 * 24 23 22 44 44 H 1.08993 * 109.91802 * 144.68395 * 24 23 22 45 45 H 1.08997 * 109.62560 * 68.25282 * 28 13 12 46 46 H 1.08998 * 109.62729 * 188.83859 * 28 13 12 47 47 H 1.09002 * 109.49159 * 292.70598 * 29 10 9 48 48 H 1.08999 * 109.49406 * 52.78075 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6965 -1.2127 5 1 1.2841 2.7465 0.0006 6 1 3.1030 1.6964 1.2124 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 7 2.2058 -3.6157 -0.0018 11 6 1.5215 -4.8936 0.2363 12 6 2.5642 -6.0033 0.4078 13 7 3.4612 -5.9858 -0.7576 14 6 3.7109 -7.1117 -1.4552 15 8 4.5124 -7.0952 -2.3692 16 6 3.0109 -8.3655 -1.1093 17 6 3.0690 -9.5866 -1.8220 18 6 2.2745 -10.4429 -1.1380 19 6 1.9996 -11.8821 -1.4901 20 1 2.1324 -12.0412 -2.5602 21 6 0.5675 -12.2753 -1.0608 22 6 0.7501 -13.7177 -0.5249 23 7 2.0665 -13.6612 0.1607 24 6 2.9292 -12.8147 -0.6916 25 7 1.7743 -9.7671 -0.0813 26 1 1.1684 -10.1389 0.5785 27 7 2.2125 -8.5594 -0.0786 28 6 4.0830 -4.7084 -1.1381 29 6 2.9759 -3.6485 -1.2523 30 1 -0.4850 0.8400 0.0004 31 1 0.6241 -2.5568 -0.8903 32 1 0.6248 -2.5571 0.8897 33 1 0.8792 -5.1261 -0.6131 34 1 0.9168 -4.8200 1.1402 35 1 2.0637 -6.9696 0.4703 36 1 3.1406 -5.8270 1.3161 37 1 3.6296 -9.7922 -2.7219 38 1 0.2056 -11.6143 -0.2732 39 1 -0.1083 -12.2643 -1.9159 40 1 0.7748 -14.4331 -1.3468 41 1 -0.0412 -13.9687 0.1815 42 1 2.4583 -14.5849 0.2675 43 1 3.5041 -13.4398 -1.3749 44 1 3.6017 -12.2245 -0.0691 45 1 4.8025 -4.4101 -0.3756 46 1 4.5870 -4.8182 -2.0983 47 1 2.3134 -3.8983 -2.0810 48 1 3.4261 -2.6715 -1.4279 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601850273.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:12:01 Heat of formation + Delta-G solvation = 69.018597 kcal Electronic energy + Delta-G solvation = -28599.049062 eV Core-core repulsion = 24691.025523 eV Total energy + Delta-G solvation = -3908.023539 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.00570 -39.64141 -38.86401 -37.34477 -34.37679 -32.84015 -32.33289 -32.05020 -30.64105 -29.93565 -28.55644 -28.12544 -25.65255 -24.14838 -23.03847 -22.43977 -21.99699 -21.65641 -21.10208 -20.10009 -18.48306 -18.16292 -17.31256 -16.78383 -16.32173 -15.94961 -15.65370 -15.39125 -14.73428 -14.66585 -14.42534 -14.29357 -14.02902 -13.69522 -13.62951 -13.56845 -13.43224 -12.89213 -12.75070 -12.71225 -12.27891 -12.09962 -11.98396 -11.81515 -11.49732 -11.29280 -11.14863 -10.83160 -10.70692 -10.65115 -10.48032 -10.24499 -9.91254 -9.65535 -9.53604 -9.23469 -9.17702 -9.14411 -8.44302 -8.32397 -7.23905 -6.01897 -4.03489 1.46822 1.89457 2.56545 3.21528 3.35153 3.38871 3.42038 3.48517 3.64700 3.94580 4.03952 4.18883 4.31866 4.43914 4.59168 4.73084 4.79920 4.90735 4.98294 5.08491 5.22433 5.27547 5.33701 5.35841 5.38809 5.48582 5.50268 5.56760 5.64439 5.76895 5.82396 5.93870 6.01014 6.10204 6.13099 6.35604 6.36643 6.53975 6.60832 6.67406 6.73958 6.93473 7.29257 7.34228 7.57831 7.77164 7.80822 8.07942 8.18944 8.34047 8.54420 9.03714 9.60734 11.08892 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.028011 B = 0.002169 C = 0.002065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.379009 B =12908.000304 C =13553.631164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.055 3.945 3 Si 0.899 3.101 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.276 1.276 7 C -0.508 4.508 8 H 0.064 0.936 9 C 0.194 3.806 10 N -0.537 5.537 11 C 0.044 3.956 12 C 0.083 3.917 13 N -0.592 5.592 14 C 0.596 3.404 15 O -0.544 6.544 16 C 0.003 3.997 17 C -0.174 4.174 18 C 0.028 3.972 19 C -0.030 4.030 20 H 0.104 0.896 21 C -0.122 4.122 22 C 0.036 3.964 23 N -0.675 5.675 24 C 0.044 3.956 25 N -0.378 5.378 26 H 0.443 0.557 27 N -0.253 5.253 28 C 0.115 3.885 29 C 0.052 3.948 30 H 0.262 0.738 31 H -0.010 1.010 32 H 0.031 0.969 33 H 0.023 0.977 34 H 0.079 0.921 35 H 0.131 0.869 36 H 0.070 0.930 37 H 0.162 0.838 38 H 0.070 0.930 39 H 0.083 0.917 40 H 0.047 0.953 41 H 0.086 0.914 42 H 0.342 0.658 43 H 0.052 0.948 44 H 0.084 0.916 45 H 0.074 0.926 46 H 0.088 0.912 47 H 0.024 0.976 48 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.839 -29.846 -1.494 29.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.146 4.146 3 Si 0.727 3.273 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.201 1.201 7 C -0.547 4.547 8 H 0.082 0.918 9 C 0.069 3.931 10 N -0.262 5.262 11 C -0.086 4.086 12 C -0.041 4.041 13 N -0.323 5.323 14 C 0.382 3.618 15 O -0.420 6.420 16 C -0.158 4.158 17 C -0.202 4.202 18 C -0.099 4.099 19 C -0.050 4.050 20 H 0.122 0.878 21 C -0.161 4.161 22 C -0.094 4.094 23 N -0.304 5.304 24 C -0.086 4.086 25 N -0.091 5.091 26 H 0.288 0.712 27 N -0.088 5.088 28 C -0.007 4.007 29 C -0.077 4.077 30 H 0.071 0.929 31 H 0.008 0.992 32 H 0.049 0.951 33 H 0.041 0.959 34 H 0.097 0.903 35 H 0.148 0.852 36 H 0.088 0.912 37 H 0.179 0.821 38 H 0.089 0.911 39 H 0.101 0.899 40 H 0.065 0.935 41 H 0.104 0.896 42 H 0.158 0.842 43 H 0.070 0.930 44 H 0.102 0.898 45 H 0.093 0.907 46 H 0.106 0.894 47 H 0.042 0.958 48 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 1.848 -28.542 -0.195 28.603 hybrid contribution -0.121 -0.222 -1.628 1.647 sum 1.727 -28.764 -1.822 28.874 Atomic orbital electron populations 1.69950 1.06081 1.26892 1.50912 1.24999 0.94876 0.99348 0.95419 0.86546 0.79413 0.82677 0.78678 1.20239 1.21417 1.20148 1.21119 0.93477 0.89905 1.50198 0.91826 1.19714 0.90025 0.87267 0.96096 1.62092 1.28022 1.02738 1.33347 1.22375 0.95024 0.90653 1.00543 1.22827 0.91978 1.02131 0.87148 1.48080 1.46204 1.08104 1.29950 1.17006 0.81372 0.81524 0.81857 1.90759 1.35529 1.84745 1.31001 1.22004 1.01787 0.96399 0.95567 1.21462 1.04154 0.91316 1.03286 1.21020 1.01181 0.95704 0.91964 1.20633 0.95636 0.87515 1.01249 0.87765 1.22610 0.95646 0.96493 1.01303 1.23076 0.92779 0.96183 0.97314 1.63085 1.03356 1.17374 1.46591 1.22779 0.95368 0.95350 0.95064 1.43557 1.36387 1.07377 1.21812 0.71160 1.73329 1.13893 0.99454 1.22112 1.22009 0.95853 0.81418 1.01427 1.22415 0.95098 0.99038 0.91151 0.92879 0.99209 0.95104 0.95859 0.90309 0.85247 0.91176 0.82071 0.91126 0.89851 0.93498 0.89591 0.84233 0.93005 0.89773 0.90726 0.89356 0.95762 0.88496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.81 13.29 55.43 0.74 -26.07 16 2 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 3 Si 0.90 21.72 29.54 -169.99 -5.02 16.70 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.51 -14.27 8.41 -34.44 -0.29 -14.56 16 8 H 0.06 1.75 7.13 -52.49 -0.37 1.38 16 9 C 0.19 5.09 4.72 -4.98 -0.02 5.07 16 10 N -0.54 -11.76 4.62 -235.46 -1.09 -12.85 16 11 C 0.04 0.81 5.62 -3.70 -0.02 0.79 16 12 C 0.08 1.33 6.46 -3.60 -0.02 1.30 16 13 N -0.59 -10.12 3.00 -173.35 -0.52 -10.64 16 14 C 0.60 10.20 7.71 -12.39 -0.10 10.10 16 15 O -0.54 -10.47 16.40 5.30 0.09 -10.38 16 16 C 0.00 0.04 6.90 -82.77 -0.57 -0.53 16 17 C -0.17 -2.00 10.73 -39.36 -0.42 -2.42 16 18 C 0.03 0.24 5.77 -82.21 -0.47 -0.23 16 19 C -0.03 -0.17 3.45 -90.41 -0.31 -0.48 16 20 H 0.10 0.49 8.14 -51.93 -0.42 0.06 16 21 C -0.12 -0.55 6.59 -24.87 -0.16 -0.71 16 22 C 0.04 0.14 7.55 -1.89 -0.01 0.13 16 23 N -0.67 -3.37 7.51 -110.08 -0.83 -4.20 16 24 C 0.04 0.24 7.17 -2.75 -0.02 0.22 16 25 N -0.38 -3.42 6.54 33.50 0.22 -3.20 16 26 H 0.44 2.81 7.65 -190.44 -1.46 1.35 16 27 N -0.25 -3.14 8.58 33.42 0.29 -2.85 16 28 C 0.12 2.02 6.62 -3.36 -0.02 2.00 16 29 C 0.05 1.05 5.47 -3.46 -0.02 1.04 16 30 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 31 H -0.01 -0.28 8.12 -51.92 -0.42 -0.70 16 32 H 0.03 0.86 7.97 -51.93 -0.41 0.44 16 33 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.08 1.41 7.99 -51.93 -0.41 0.99 16 35 H 0.13 1.89 3.83 -106.12 -0.41 1.48 16 36 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 37 H 0.16 1.69 8.06 -52.49 -0.42 1.26 16 38 H 0.07 0.33 6.38 -51.93 -0.33 0.00 16 39 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 40 H 0.05 0.15 8.14 -51.93 -0.42 -0.27 16 41 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 42 H 0.34 1.24 8.92 -39.29 -0.35 0.89 16 43 H 0.05 0.22 8.14 -51.93 -0.42 -0.20 16 44 H 0.08 0.59 7.67 -51.93 -0.40 0.19 16 45 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 46 H 0.09 1.52 7.08 -51.93 -0.37 1.15 16 47 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 48 H 0.10 2.06 6.67 -51.93 -0.35 1.71 16 LS Contribution 378.50 15.07 5.70 5.70 Total: -1.00 -33.63 378.50 -11.64 -45.27 By element: Atomic # 1 Polarization: 8.00 SS G_CDS: -8.64 Total: -0.64 kcal Atomic # 6 Polarization: 5.74 SS G_CDS: -2.57 Total: 3.17 kcal Atomic # 7 Polarization: -58.62 SS G_CDS: -1.19 Total: -59.82 kcal Atomic # 8 Polarization: -10.47 SS G_CDS: 0.09 Total: -10.38 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -33.63 -11.64 -45.27 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601850273.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.285 kcal (2) G-P(sol) polarization free energy of solvation -33.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.267 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds