Wall clock time and date at job start Tue Mar 31 2020 18:12:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86797 * 119.99803 * 2 1 4 4 H 1.48509 * 109.47039 * 240.00676 * 3 2 1 5 5 H 1.48503 * 109.47311 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.47294 * 120.00599 * 3 2 1 7 7 C 1.37880 * 120.00107 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99684 * 179.97438 * 7 2 1 9 9 C 1.50693 * 119.99994 * 359.97438 * 7 2 1 10 10 N 1.46903 * 109.47259 * 179.97438 * 9 7 2 11 11 C 1.46898 * 110.99985 * 169.99963 * 10 9 7 12 12 C 1.53242 * 109.33836 * 187.25405 * 11 10 9 13 13 N 1.47074 * 108.52156 * 306.17241 * 12 11 10 14 14 C 1.34782 * 120.87848 * 231.18713 * 13 12 11 15 15 O 1.21573 * 119.99734 * 184.13150 * 14 13 12 16 16 C 1.47710 * 120.00137 * 4.13114 * 14 13 12 17 17 C 1.41500 * 126.51769 * 173.54161 * 16 14 13 18 18 C 1.35364 * 105.50243 * 180.02562 * 17 16 14 19 19 C 1.50696 * 126.38266 * 180.02562 * 18 17 16 20 20 H 1.08995 * 110.28138 * 334.36928 * 19 18 17 21 21 C 1.54594 * 110.30813 * 212.17164 * 19 18 17 22 22 C 1.54944 * 102.92396 * 219.12928 * 21 19 18 23 23 N 1.48534 * 103.22201 * 37.41333 * 22 21 19 24 24 C 1.47898 * 105.82627 * 320.79383 * 23 22 21 25 25 N 1.35034 * 107.23002 * 0.02562 * 18 17 16 26 26 H 0.96996 * 124.88357 * 179.73214 * 25 18 17 27 27 N 1.28467 * 110.22939 * 359.97438 * 25 18 17 28 28 C 1.47081 * 118.23994 * 51.45578 * 13 12 11 29 29 C 1.46900 * 110.99981 * 294.30232 * 10 9 7 30 30 H 0.96995 * 120.00107 * 359.97438 * 1 2 3 31 31 H 1.09007 * 109.47656 * 59.99942 * 9 7 2 32 32 H 1.09005 * 109.47539 * 300.00126 * 9 7 2 33 33 H 1.08999 * 109.49594 * 67.29397 * 11 10 9 34 34 H 1.08999 * 109.51852 * 307.22222 * 11 10 9 35 35 H 1.08998 * 109.62957 * 186.45505 * 12 11 10 36 36 H 1.09005 * 109.62933 * 65.88016 * 12 11 10 37 37 H 1.08000 * 127.24932 * 0.05064 * 17 16 14 38 38 H 1.08997 * 110.72586 * 337.48519 * 21 19 18 39 39 H 1.08999 * 110.72532 * 100.77527 * 21 19 18 40 40 H 1.08994 * 110.66675 * 278.98330 * 22 21 19 41 41 H 1.08997 * 110.66735 * 155.84613 * 22 21 19 42 42 H 1.00904 * 110.99384 * 200.27534 * 23 22 21 43 43 H 1.09005 * 109.91412 * 265.98041 * 24 23 22 44 44 H 1.08993 * 109.91802 * 144.68395 * 24 23 22 45 45 H 1.08997 * 109.62560 * 68.25282 * 28 13 12 46 46 H 1.08998 * 109.62729 * 188.83859 * 28 13 12 47 47 H 1.09002 * 109.49159 * 292.70598 * 29 10 9 48 48 H 1.08999 * 109.49406 * 52.78075 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6965 -1.2127 5 1 1.2841 2.7465 0.0006 6 1 3.1030 1.6964 1.2124 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 7 2.2058 -3.6157 -0.0018 11 6 1.5215 -4.8936 0.2363 12 6 2.5642 -6.0033 0.4078 13 7 3.4612 -5.9858 -0.7576 14 6 3.7109 -7.1117 -1.4552 15 8 4.5124 -7.0952 -2.3692 16 6 3.0109 -8.3655 -1.1093 17 6 3.0690 -9.5866 -1.8220 18 6 2.2745 -10.4429 -1.1380 19 6 1.9996 -11.8821 -1.4901 20 1 2.1324 -12.0412 -2.5602 21 6 0.5675 -12.2753 -1.0608 22 6 0.7501 -13.7177 -0.5249 23 7 2.0665 -13.6612 0.1607 24 6 2.9292 -12.8147 -0.6916 25 7 1.7743 -9.7671 -0.0813 26 1 1.1684 -10.1389 0.5785 27 7 2.2125 -8.5594 -0.0786 28 6 4.0830 -4.7084 -1.1381 29 6 2.9759 -3.6485 -1.2523 30 1 -0.4850 0.8400 0.0004 31 1 0.6241 -2.5568 -0.8903 32 1 0.6248 -2.5571 0.8897 33 1 0.8792 -5.1261 -0.6131 34 1 0.9168 -4.8200 1.1402 35 1 2.0637 -6.9696 0.4703 36 1 3.1406 -5.8270 1.3161 37 1 3.6296 -9.7922 -2.7219 38 1 0.2056 -11.6143 -0.2732 39 1 -0.1083 -12.2643 -1.9159 40 1 0.7748 -14.4331 -1.3468 41 1 -0.0412 -13.9687 0.1815 42 1 2.4583 -14.5849 0.2675 43 1 3.5041 -13.4398 -1.3749 44 1 3.6017 -12.2245 -0.0691 45 1 4.8025 -4.4101 -0.3756 46 1 4.5870 -4.8182 -2.0983 47 1 2.3134 -3.8983 -2.0810 48 1 3.4261 -2.6715 -1.4279 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601850273.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:12:00 Heat of formation + Delta-G solvation = 43.263638 kcal Electronic energy + Delta-G solvation = -28600.165881 eV Core-core repulsion = 24691.025523 eV Total energy + Delta-G solvation = -3909.140358 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.88793 -41.00140 -39.32047 -38.91891 -36.04072 -34.44857 -33.49198 -33.00847 -32.00118 -30.46728 -30.00970 -29.04116 -27.42802 -25.53877 -24.38312 -23.62658 -23.13673 -22.34086 -21.94751 -21.42266 -19.71163 -19.06487 -18.47922 -17.85346 -17.64506 -17.05653 -16.94692 -16.66075 -16.11427 -15.96737 -15.88247 -15.39763 -15.37744 -14.99331 -14.76631 -14.71196 -14.29358 -14.02530 -14.01627 -13.62095 -13.26651 -13.15762 -13.11046 -12.78540 -12.65391 -12.57423 -12.51754 -12.35232 -12.29140 -12.19916 -11.88013 -11.76089 -11.46890 -11.38966 -10.89440 -10.60989 -10.49933 -10.02438 -9.78835 -9.47159 -9.07541 -8.20615 -6.30847 0.42075 1.04389 1.42318 1.45561 1.53257 1.67594 2.04413 2.26525 2.40975 3.11112 3.15763 3.26808 3.33337 3.43761 3.62246 3.78288 3.87276 4.03106 4.12337 4.21902 4.22779 4.33662 4.35847 4.37497 4.41805 4.56479 4.60946 4.67246 4.82547 4.84027 4.90207 4.91093 4.92101 5.01192 5.02565 5.05872 5.09860 5.14474 5.21840 5.28392 5.50396 5.63699 5.79550 6.01662 6.05791 6.18672 6.35093 6.40542 6.56560 6.78381 6.84215 7.05196 7.38698 8.90404 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.028011 B = 0.002169 C = 0.002065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.379009 B =12908.000304 C =13553.631164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.001 3.999 3 Si 0.971 3.029 4 H -0.268 1.268 5 H -0.284 1.284 6 H -0.267 1.267 7 C -0.524 4.524 8 H 0.066 0.934 9 C 0.209 3.791 10 N -0.540 5.540 11 C 0.044 3.956 12 C 0.094 3.906 13 N -0.598 5.598 14 C 0.595 3.405 15 O -0.571 6.571 16 C -0.026 4.026 17 C -0.189 4.189 18 C 0.053 3.947 19 C -0.028 4.028 20 H 0.120 0.880 21 C -0.123 4.123 22 C 0.038 3.962 23 N -0.686 5.686 24 C 0.047 3.953 25 N -0.361 5.361 26 H 0.457 0.543 27 N -0.264 5.264 28 C 0.125 3.875 29 C 0.057 3.943 30 H 0.264 0.736 31 H -0.042 1.042 32 H 0.009 0.991 33 H 0.014 0.986 34 H 0.085 0.915 35 H 0.150 0.850 36 H 0.076 0.924 37 H 0.167 0.833 38 H 0.068 0.932 39 H 0.093 0.907 40 H 0.058 0.942 41 H 0.090 0.910 42 H 0.350 0.650 43 H 0.065 0.935 44 H 0.066 0.934 45 H 0.084 0.916 46 H 0.093 0.907 47 H 0.010 0.990 48 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.270 -31.790 -1.210 31.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.197 4.197 3 Si 0.795 3.205 4 H -0.193 1.193 5 H -0.210 1.210 6 H -0.192 1.192 7 C -0.562 4.562 8 H 0.084 0.916 9 C 0.083 3.917 10 N -0.264 5.264 11 C -0.085 4.085 12 C -0.029 4.029 13 N -0.330 5.330 14 C 0.383 3.617 15 O -0.450 6.450 16 C -0.185 4.185 17 C -0.217 4.217 18 C -0.075 4.075 19 C -0.048 4.048 20 H 0.138 0.862 21 C -0.161 4.161 22 C -0.091 4.091 23 N -0.317 5.317 24 C -0.083 4.083 25 N -0.076 5.076 26 H 0.305 0.695 27 N -0.101 5.101 28 C 0.003 3.997 29 C -0.072 4.072 30 H 0.073 0.927 31 H -0.024 1.024 32 H 0.027 0.973 33 H 0.032 0.968 34 H 0.104 0.896 35 H 0.167 0.833 36 H 0.095 0.905 37 H 0.185 0.815 38 H 0.087 0.913 39 H 0.112 0.888 40 H 0.077 0.923 41 H 0.108 0.892 42 H 0.166 0.834 43 H 0.084 0.916 44 H 0.084 0.916 45 H 0.102 0.898 46 H 0.111 0.889 47 H 0.029 0.971 48 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 2.279 -30.521 0.108 30.606 hybrid contribution -0.324 0.228 -1.702 1.748 sum 1.955 -30.293 -1.594 30.398 Atomic orbital electron populations 1.70082 1.07758 1.27987 1.51662 1.25937 0.95766 1.03269 0.94761 0.85409 0.78107 0.77772 0.79164 1.19259 1.20959 1.19193 1.21428 0.93745 0.90875 1.50200 0.91560 1.19376 0.90024 0.88825 0.93476 1.62039 1.27192 1.03076 1.34141 1.22470 0.95801 0.89858 1.00385 1.22834 0.91227 1.01858 0.86947 1.48151 1.46425 1.08039 1.30338 1.17375 0.80993 0.82227 0.81124 1.90727 1.36809 1.85378 1.32081 1.21709 1.03391 0.96081 0.97312 1.21634 1.05242 0.90868 1.03959 1.21363 0.99058 0.96613 0.90430 1.20781 0.96594 0.85201 1.02244 0.86234 1.22657 0.94890 0.96854 1.01710 1.23095 0.92277 0.95985 0.97709 1.63059 1.03806 1.17970 1.46837 1.22690 0.95206 0.95366 0.94996 1.43575 1.35624 1.06437 1.21989 0.69492 1.73060 1.14061 1.01094 1.21868 1.21835 0.94754 0.81042 1.02101 1.22358 0.95337 0.99530 0.89951 0.92684 1.02447 0.97255 0.96820 0.89625 0.83329 0.90526 0.81523 0.91307 0.88816 0.92338 0.89200 0.83368 0.91623 0.91564 0.89798 0.88910 0.97132 0.89719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.79 13.29 21.45 0.28 -56.50 16 2 C 0.00 0.04 5.46 84.66 0.46 0.50 16 3 Si 0.97 44.65 29.54 68.60 2.03 46.68 16 4 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 5 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 6 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 7 C -0.52 -29.97 8.41 25.60 0.22 -29.75 16 8 H 0.07 3.68 7.13 -2.91 -0.02 3.66 16 9 C 0.21 11.40 4.72 85.55 0.40 11.80 16 10 N -0.54 -24.20 4.62 -898.87 -4.15 -28.35 16 11 C 0.04 1.65 5.62 86.38 0.49 2.14 16 12 C 0.09 2.97 6.46 86.35 0.56 3.53 16 13 N -0.60 -20.39 3.00 -820.61 -2.46 -22.85 16 14 C 0.59 20.31 7.71 86.75 0.67 20.98 16 15 O -0.57 -22.15 16.40 -3.94 -0.06 -22.21 16 16 C -0.03 -0.73 6.90 42.46 0.29 -0.44 16 17 C -0.19 -4.11 10.73 22.41 0.24 -3.87 16 18 C 0.05 0.80 5.77 41.40 0.24 1.04 16 19 C -0.03 -0.23 3.45 -10.66 -0.04 -0.27 16 20 H 0.12 0.73 8.14 -2.39 -0.02 0.71 16 21 C -0.12 -0.75 6.59 31.80 0.21 -0.54 16 22 C 0.04 0.19 7.55 86.65 0.65 0.84 16 23 N -0.69 -5.16 7.51 -502.19 -3.77 -8.93 16 24 C 0.05 0.40 7.17 86.45 0.62 1.02 16 25 N -0.36 -5.83 6.54 -47.93 -0.31 -6.14 16 26 H 0.46 4.71 7.65 -220.00 -1.68 3.02 16 27 N -0.26 -6.22 8.58 -48.18 -0.41 -6.64 16 28 C 0.13 4.41 6.62 86.50 0.57 4.99 16 29 C 0.06 2.38 5.47 86.54 0.47 2.85 16 30 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 31 H -0.04 -2.52 8.12 -2.38 -0.02 -2.54 16 32 H 0.01 0.54 7.97 -2.38 -0.02 0.52 16 33 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 34 H 0.09 3.08 7.99 -2.39 -0.02 3.06 16 35 H 0.15 4.19 3.83 -72.49 -0.28 3.91 16 36 H 0.08 2.34 8.14 -2.38 -0.02 2.32 16 37 H 0.17 3.34 8.06 -2.91 -0.02 3.31 16 38 H 0.07 0.44 6.38 -2.39 -0.02 0.43 16 39 H 0.09 0.41 8.14 -2.39 -0.02 0.40 16 40 H 0.06 0.18 8.14 -2.39 -0.02 0.16 16 41 H 0.09 0.41 8.14 -2.39 -0.02 0.39 16 42 H 0.35 1.71 8.92 -89.69 -0.80 0.91 16 43 H 0.07 0.39 8.14 -2.38 -0.02 0.37 16 44 H 0.07 0.81 7.67 -2.39 -0.02 0.79 16 45 H 0.08 2.81 8.14 -2.39 -0.02 2.79 16 46 H 0.09 3.20 7.08 -2.39 -0.02 3.19 16 47 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 48 H 0.08 3.69 6.67 -2.39 -0.02 3.68 16 Total: -1.00 -73.52 378.50 -4.56 -78.08 By element: Atomic # 1 Polarization: 13.79 SS G_CDS: -1.75 Total: 12.03 kcal Atomic # 6 Polarization: 8.77 SS G_CDS: 6.06 Total: 14.82 kcal Atomic # 7 Polarization: -118.58 SS G_CDS: -10.83 Total: -129.41 kcal Atomic # 8 Polarization: -22.15 SS G_CDS: -0.06 Total: -22.21 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.68 kcal Total: -73.52 -4.56 -78.08 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601850273.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.345 kcal (2) G-P(sol) polarization free energy of solvation -73.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.081 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds