Wall clock time and date at job start Tue Mar 31 2020 17:59:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86802 * 120.00461 * 2 1 4 4 H 1.48498 * 109.47041 * 240.00055 * 3 2 1 5 5 H 1.48505 * 109.46914 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47211 * 119.99834 * 3 2 1 7 7 C 1.37880 * 119.99363 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99275 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00313 * 0.02562 * 7 2 1 10 10 N 1.46898 * 109.46835 * 180.02562 * 9 7 2 11 11 C 1.46906 * 110.99801 * 170.00134 * 10 9 7 12 12 C 1.53235 * 109.34079 * 187.25100 * 11 10 9 13 13 N 1.47081 * 108.52054 * 306.16959 * 12 11 10 14 14 C 1.34776 * 120.88011 * 231.20569 * 13 12 11 15 15 O 1.21282 * 120.00060 * 179.97438 * 14 13 12 16 16 C 1.50702 * 119.99795 * 359.97438 * 14 13 12 17 17 N 1.46500 * 109.46913 * 180.02562 * 16 14 13 18 18 N 1.29112 * 126.00745 * 90.01921 * 17 16 14 19 19 N 1.29023 * 110.25663 * 179.90745 * 18 17 16 20 20 C 1.32909 * 108.63726 * 359.97438 * 19 18 17 21 21 C 1.34396 * 126.00767 * 269.71791 * 17 16 14 22 22 C 1.50541 * 129.25145 * 0.88129 * 21 17 16 23 23 C 1.53438 * 108.38464 * 163.09808 * 22 21 17 24 24 C 1.53107 * 109.54681 * 49.50303 * 23 22 21 25 25 C 1.50595 * 129.16126 * 180.18238 * 20 19 18 26 26 C 1.47082 * 118.23500 * 51.18575 * 13 12 11 27 27 C 1.46896 * 110.99912 * 294.29778 * 10 9 7 28 28 H 0.97003 * 119.99498 * 0.02562 * 1 2 3 29 29 H 1.08993 * 109.46926 * 59.99689 * 9 7 2 30 30 H 1.09004 * 109.47047 * 299.99905 * 9 7 2 31 31 H 1.08997 * 109.48796 * 307.21122 * 11 10 9 32 32 H 1.08997 * 109.49279 * 67.28994 * 11 10 9 33 33 H 1.09002 * 109.62473 * 65.87852 * 12 11 10 34 34 H 1.09000 * 109.62576 * 186.45954 * 12 11 10 35 35 H 1.09001 * 109.47253 * 299.99611 * 16 14 13 36 36 H 1.08992 * 109.47322 * 60.00163 * 16 14 13 37 37 H 1.09001 * 109.83666 * 43.26843 * 22 21 17 38 38 H 1.09002 * 109.52604 * 282.74268 * 22 21 17 39 39 H 1.08997 * 109.45687 * 289.48379 * 23 22 21 40 40 H 1.08996 * 109.45877 * 169.53403 * 23 22 21 41 41 H 1.09010 * 109.45020 * 169.89267 * 24 23 22 42 42 H 1.09001 * 109.45292 * 49.96555 * 24 23 22 43 43 H 1.09005 * 109.68580 * 283.16853 * 25 20 19 44 44 H 1.08993 * 109.69436 * 43.70434 * 25 20 19 45 45 H 1.09001 * 109.62379 * 189.10499 * 26 13 12 46 46 H 1.08998 * 109.62760 * 68.52569 * 26 13 12 47 47 H 1.09001 * 109.49756 * 292.70738 * 27 10 9 48 48 H 1.08996 * 109.49111 * 52.79307 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7465 -0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0044 -1.1942 0.0005 8 1 3.0844 -1.1941 0.0010 9 6 1.2508 -2.4992 0.0005 10 7 2.2054 -3.6158 0.0018 11 6 1.5207 -4.8935 0.2399 12 6 2.5630 -6.0031 0.4140 13 7 3.4617 -5.9867 -0.7502 14 6 3.7122 -7.1131 -1.4467 15 8 4.4555 -7.0812 -2.4044 16 6 3.0685 -8.4121 -1.0353 17 7 3.4974 -9.4787 -1.9435 18 7 4.5315 -10.2363 -1.7898 19 7 4.6216 -11.0729 -2.7679 20 6 3.6083 -10.8623 -3.6018 21 6 2.8803 -9.8442 -3.0801 22 6 1.6422 -9.2729 -3.7180 23 6 1.5929 -9.7367 -5.1798 24 6 1.8124 -11.2506 -5.2445 25 6 3.2675 -11.5754 -4.8836 26 6 4.0795 -4.7084 -1.1344 27 6 2.9774 -3.6497 -1.2475 28 1 -0.4849 0.8401 -0.0004 29 1 0.6245 -2.5571 -0.8896 30 1 0.6238 -2.5567 0.8903 31 1 0.9149 -4.8186 1.1429 32 1 0.8797 -5.1266 -0.6103 33 1 3.1380 -5.8260 1.3229 34 1 2.0623 -6.9693 0.4764 35 1 3.3686 -8.6599 -0.0171 36 1 1.9842 -8.3105 -1.0800 37 1 1.6748 -8.1841 -3.6790 38 1 0.7602 -9.6331 -3.1884 39 1 2.3746 -9.2319 -5.7474 40 1 0.6199 -9.4922 -5.6057 41 1 1.6006 -11.6052 -6.2533 42 1 1.1447 -11.7447 -4.5388 43 1 3.9280 -11.2338 -5.6807 44 1 3.3821 -12.6507 -4.7474 45 1 4.5813 -4.8186 -2.0957 46 1 4.8002 -4.4070 -0.3743 47 1 2.3162 -3.9003 -2.0771 48 1 3.4280 -2.6730 -1.4233 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602202286.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:59:03 Heat of formation + Delta-G solvation = 68.822829 kcal Electronic energy + Delta-G solvation = -29076.431675 eV Core-core repulsion = 25168.399647 eV Total energy + Delta-G solvation = -3908.032028 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.55214 -40.26398 -37.82635 -37.31714 -34.99520 -34.67202 -32.53775 -31.36814 -30.74052 -30.31759 -29.18728 -27.86624 -25.62574 -24.40948 -23.57145 -22.90533 -22.51100 -21.77479 -20.65171 -19.84514 -19.03549 -17.89689 -17.36138 -16.46150 -16.33303 -15.83189 -15.69333 -15.12722 -14.85560 -14.64686 -14.31221 -14.27815 -14.09787 -14.04660 -13.83155 -13.79865 -13.60101 -13.31858 -12.65339 -12.44562 -12.43687 -12.11329 -11.70617 -11.48997 -11.42464 -11.35486 -11.32879 -11.28452 -10.97435 -10.91089 -10.74972 -10.66915 -10.62507 -10.55305 -9.99563 -9.78886 -9.40038 -8.95623 -8.75875 -8.54705 -7.49806 -6.14891 -4.17226 1.35607 1.97050 2.25410 2.44581 2.85146 3.26273 3.30959 3.33449 3.89558 4.00734 4.14887 4.30357 4.36655 4.47384 4.49952 4.57980 4.60350 4.69650 4.96409 5.04012 5.10440 5.11579 5.20833 5.22210 5.26453 5.27390 5.43984 5.51572 5.55709 5.61066 5.64783 5.72426 5.78145 5.81258 5.84143 5.94678 5.99759 6.11314 6.16910 6.33480 6.36947 6.52356 7.07610 7.12058 7.19439 7.63062 7.83972 7.87194 7.99172 8.35121 8.40812 8.89470 9.47902 10.95819 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.022553 B = 0.002376 C = 0.002294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.198166 B =11781.093707 C =12201.011074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.057 3.943 3 Si 0.899 3.101 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.513 4.513 8 H 0.064 0.936 9 C 0.195 3.805 10 N -0.535 5.535 11 C 0.039 3.961 12 C 0.107 3.893 13 N -0.600 5.600 14 C 0.501 3.499 15 O -0.527 6.527 16 C 0.095 3.905 17 N -0.268 5.268 18 N -0.085 5.085 19 N -0.261 5.261 20 C -0.022 4.022 21 C -0.006 4.006 22 C -0.048 4.048 23 C -0.115 4.115 24 C -0.119 4.119 25 C -0.032 4.032 26 C 0.116 3.884 27 C 0.052 3.948 28 H 0.263 0.737 29 H -0.008 1.008 30 H 0.032 0.968 31 H 0.085 0.915 32 H 0.028 0.972 33 H 0.084 0.916 34 H 0.077 0.923 35 H 0.137 0.863 36 H 0.132 0.868 37 H 0.081 0.919 38 H 0.085 0.915 39 H 0.071 0.929 40 H 0.077 0.923 41 H 0.076 0.924 42 H 0.067 0.933 43 H 0.081 0.919 44 H 0.083 0.917 45 H 0.089 0.911 46 H 0.077 0.923 47 H 0.025 0.975 48 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.299 -20.763 -5.604 21.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.727 3.273 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.551 4.551 8 H 0.082 0.918 9 C 0.070 3.930 10 N -0.261 5.261 11 C -0.090 4.090 12 C -0.016 4.016 13 N -0.334 5.334 14 C 0.285 3.715 15 O -0.403 6.403 16 C -0.030 4.030 17 N -0.059 5.059 18 N -0.063 5.063 19 N -0.126 5.126 20 C -0.162 4.162 21 C -0.139 4.139 22 C -0.088 4.088 23 C -0.153 4.153 24 C -0.157 4.157 25 C -0.071 4.071 26 C -0.006 4.006 27 C -0.077 4.077 28 H 0.073 0.927 29 H 0.009 0.991 30 H 0.050 0.950 31 H 0.104 0.896 32 H 0.046 0.954 33 H 0.103 0.897 34 H 0.095 0.905 35 H 0.155 0.845 36 H 0.149 0.851 37 H 0.099 0.901 38 H 0.103 0.897 39 H 0.090 0.910 40 H 0.096 0.904 41 H 0.094 0.906 42 H 0.086 0.914 43 H 0.100 0.900 44 H 0.101 0.899 45 H 0.107 0.893 46 H 0.096 0.904 47 H 0.043 0.957 48 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 1.509 -20.852 -4.784 21.447 hybrid contribution -1.142 1.387 -0.895 2.007 sum 0.367 -19.465 -5.679 20.280 Atomic orbital electron populations 1.69938 1.06101 1.27093 1.50531 1.24986 0.94878 0.99400 0.95203 0.86544 0.79454 0.82602 0.78740 1.20215 1.21308 1.20079 1.21084 0.93461 0.89839 1.50756 0.91833 1.19721 0.89908 0.87090 0.96238 1.62101 1.27953 1.02512 1.33497 1.22396 0.94598 0.90823 1.01210 1.22052 0.91972 0.99089 0.88501 1.48196 1.46735 1.08354 1.30066 1.20279 0.82599 0.84912 0.83687 1.90788 1.36777 1.85228 1.27494 1.21931 1.01921 0.84282 0.94878 1.46294 1.18348 1.24137 1.17098 1.78585 1.04715 1.02606 1.20401 1.74778 1.19938 1.17457 1.00401 1.21598 0.94764 0.99608 1.00197 1.21775 1.01162 1.00663 0.90335 1.20219 0.91820 1.00674 0.96040 1.21571 1.02947 0.96208 0.94536 1.21634 0.95827 0.95992 1.02226 1.19940 0.96580 0.99587 0.90991 1.21949 0.96040 0.80912 1.01684 1.22351 0.95063 0.99220 0.91114 0.92737 0.99051 0.94959 0.89649 0.95381 0.89727 0.90466 0.84532 0.85059 0.90079 0.89688 0.91031 0.90389 0.90564 0.91405 0.90021 0.89893 0.89276 0.90425 0.95652 0.88195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.49 13.29 55.43 0.74 -24.75 16 2 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 3 Si 0.90 20.77 29.54 -169.99 -5.02 15.75 16 4 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 5 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 6 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 7 C -0.51 -13.49 8.41 -34.44 -0.29 -13.78 16 8 H 0.06 1.65 7.13 -52.49 -0.37 1.27 16 9 C 0.20 4.65 4.72 -4.98 -0.02 4.63 16 10 N -0.54 -10.11 4.62 -235.77 -1.09 -11.20 16 11 C 0.04 0.56 5.62 -3.70 -0.02 0.54 16 12 C 0.11 1.14 6.50 -3.60 -0.02 1.12 16 13 N -0.60 -7.78 3.01 -172.46 -0.52 -8.30 16 14 C 0.50 6.69 7.78 -10.98 -0.09 6.60 16 15 O -0.53 -9.33 15.88 5.56 0.09 -9.24 16 16 C 0.10 0.92 5.09 -5.19 -0.03 0.90 16 17 N -0.27 -3.44 2.82 -58.43 -0.16 -3.61 16 18 N -0.09 -1.33 13.19 60.35 0.80 -0.54 16 19 N -0.26 -4.08 12.40 33.16 0.41 -3.67 16 20 C -0.02 -0.28 7.11 -83.12 -0.59 -0.87 16 21 C -0.01 -0.07 6.77 -82.49 -0.56 -0.63 16 22 C -0.05 -0.40 5.95 -27.73 -0.16 -0.57 16 23 C -0.11 -0.80 5.90 -26.45 -0.16 -0.96 16 24 C -0.12 -0.75 5.89 -26.47 -0.16 -0.91 16 25 C -0.03 -0.28 6.30 -27.73 -0.17 -0.45 16 26 C 0.12 1.73 6.60 -3.60 -0.02 1.71 16 27 C 0.05 0.91 5.46 -3.70 -0.02 0.89 16 28 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 29 H -0.01 -0.22 8.12 -51.93 -0.42 -0.64 16 30 H 0.03 0.82 7.97 -51.93 -0.41 0.41 16 31 H 0.09 1.17 7.99 -51.93 -0.41 0.75 16 32 H 0.03 0.41 8.14 -51.93 -0.42 -0.02 16 33 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.08 0.52 6.02 -51.93 -0.31 0.20 16 35 H 0.14 1.00 8.00 -51.93 -0.42 0.58 16 36 H 0.13 0.82 7.48 -51.93 -0.39 0.43 16 37 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 39 H 0.07 0.58 8.12 -51.93 -0.42 0.16 16 40 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.08 0.35 8.14 -51.92 -0.42 -0.07 16 42 H 0.07 0.41 8.12 -51.93 -0.42 -0.01 16 43 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.09 1.37 7.06 -51.93 -0.37 1.01 16 46 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 47 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 48 H 0.10 1.92 6.67 -51.93 -0.35 1.57 16 LS Contribution 382.01 15.07 5.76 5.76 Total: -1.00 -34.53 382.01 -9.08 -43.60 By element: Atomic # 1 Polarization: 4.19 SS G_CDS: -7.66 Total: -3.47 kcal Atomic # 6 Polarization: 2.07 SS G_CDS: -2.41 Total: -0.34 kcal Atomic # 7 Polarization: -52.23 SS G_CDS: 0.17 Total: -52.06 kcal Atomic # 8 Polarization: -9.33 SS G_CDS: 0.09 Total: -9.24 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -34.53 -9.08 -43.60 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602202286.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.427 kcal (2) G-P(sol) polarization free energy of solvation -34.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.604 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds