Wall clock time and date at job start Tue Mar 31 2020 17:59:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86802 * 120.00461 * 2 1 4 4 H 1.48498 * 109.47041 * 240.00055 * 3 2 1 5 5 H 1.48505 * 109.46914 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47211 * 119.99834 * 3 2 1 7 7 C 1.37880 * 119.99363 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99275 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00313 * 0.02562 * 7 2 1 10 10 N 1.46898 * 109.46835 * 180.02562 * 9 7 2 11 11 C 1.46906 * 110.99801 * 170.00134 * 10 9 7 12 12 C 1.53235 * 109.34079 * 187.25100 * 11 10 9 13 13 N 1.47081 * 108.52054 * 306.16959 * 12 11 10 14 14 C 1.34776 * 120.88011 * 231.20569 * 13 12 11 15 15 O 1.21282 * 120.00060 * 179.97438 * 14 13 12 16 16 C 1.50702 * 119.99795 * 359.97438 * 14 13 12 17 17 N 1.46500 * 109.46913 * 180.02562 * 16 14 13 18 18 N 1.29112 * 126.00745 * 90.01921 * 17 16 14 19 19 N 1.29023 * 110.25663 * 179.90745 * 18 17 16 20 20 C 1.32909 * 108.63726 * 359.97438 * 19 18 17 21 21 C 1.34396 * 126.00767 * 269.71791 * 17 16 14 22 22 C 1.50541 * 129.25145 * 0.88129 * 21 17 16 23 23 C 1.53438 * 108.38464 * 163.09808 * 22 21 17 24 24 C 1.53107 * 109.54681 * 49.50303 * 23 22 21 25 25 C 1.50595 * 129.16126 * 180.18238 * 20 19 18 26 26 C 1.47082 * 118.23500 * 51.18575 * 13 12 11 27 27 C 1.46896 * 110.99912 * 294.29778 * 10 9 7 28 28 H 0.97003 * 119.99498 * 0.02562 * 1 2 3 29 29 H 1.08993 * 109.46926 * 59.99689 * 9 7 2 30 30 H 1.09004 * 109.47047 * 299.99905 * 9 7 2 31 31 H 1.08997 * 109.48796 * 307.21122 * 11 10 9 32 32 H 1.08997 * 109.49279 * 67.28994 * 11 10 9 33 33 H 1.09002 * 109.62473 * 65.87852 * 12 11 10 34 34 H 1.09000 * 109.62576 * 186.45954 * 12 11 10 35 35 H 1.09001 * 109.47253 * 299.99611 * 16 14 13 36 36 H 1.08992 * 109.47322 * 60.00163 * 16 14 13 37 37 H 1.09001 * 109.83666 * 43.26843 * 22 21 17 38 38 H 1.09002 * 109.52604 * 282.74268 * 22 21 17 39 39 H 1.08997 * 109.45687 * 289.48379 * 23 22 21 40 40 H 1.08996 * 109.45877 * 169.53403 * 23 22 21 41 41 H 1.09010 * 109.45020 * 169.89267 * 24 23 22 42 42 H 1.09001 * 109.45292 * 49.96555 * 24 23 22 43 43 H 1.09005 * 109.68580 * 283.16853 * 25 20 19 44 44 H 1.08993 * 109.69436 * 43.70434 * 25 20 19 45 45 H 1.09001 * 109.62379 * 189.10499 * 26 13 12 46 46 H 1.08998 * 109.62760 * 68.52569 * 26 13 12 47 47 H 1.09001 * 109.49756 * 292.70738 * 27 10 9 48 48 H 1.08996 * 109.49111 * 52.79307 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7465 -0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0044 -1.1942 0.0005 8 1 3.0844 -1.1941 0.0010 9 6 1.2508 -2.4992 0.0005 10 7 2.2054 -3.6158 0.0018 11 6 1.5207 -4.8935 0.2399 12 6 2.5630 -6.0031 0.4140 13 7 3.4617 -5.9867 -0.7502 14 6 3.7122 -7.1131 -1.4467 15 8 4.4555 -7.0812 -2.4044 16 6 3.0685 -8.4121 -1.0353 17 7 3.4974 -9.4787 -1.9435 18 7 4.5315 -10.2363 -1.7898 19 7 4.6216 -11.0729 -2.7679 20 6 3.6083 -10.8623 -3.6018 21 6 2.8803 -9.8442 -3.0801 22 6 1.6422 -9.2729 -3.7180 23 6 1.5929 -9.7367 -5.1798 24 6 1.8124 -11.2506 -5.2445 25 6 3.2675 -11.5754 -4.8836 26 6 4.0795 -4.7084 -1.1344 27 6 2.9774 -3.6497 -1.2475 28 1 -0.4849 0.8401 -0.0004 29 1 0.6245 -2.5571 -0.8896 30 1 0.6238 -2.5567 0.8903 31 1 0.9149 -4.8186 1.1429 32 1 0.8797 -5.1266 -0.6103 33 1 3.1380 -5.8260 1.3229 34 1 2.0623 -6.9693 0.4764 35 1 3.3686 -8.6599 -0.0171 36 1 1.9842 -8.3105 -1.0800 37 1 1.6748 -8.1841 -3.6790 38 1 0.7602 -9.6331 -3.1884 39 1 2.3746 -9.2319 -5.7474 40 1 0.6199 -9.4922 -5.6057 41 1 1.6006 -11.6052 -6.2533 42 1 1.1447 -11.7447 -4.5388 43 1 3.9280 -11.2338 -5.6807 44 1 3.3821 -12.6507 -4.7474 45 1 4.5813 -4.8186 -2.0957 46 1 4.8002 -4.4070 -0.3743 47 1 2.3162 -3.9003 -2.0771 48 1 3.4280 -2.6730 -1.4233 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602202286.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:59:02 Heat of formation + Delta-G solvation = 44.441469 kcal Electronic energy + Delta-G solvation = -29077.488930 eV Core-core repulsion = 25168.399647 eV Total energy + Delta-G solvation = -3909.089283 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -44.47338 -41.37901 -39.13286 -37.97329 -36.11927 -35.92373 -34.43620 -32.46958 -31.52572 -31.12542 -30.43473 -29.18024 -27.20155 -25.13962 -24.78477 -24.01349 -23.64082 -23.00753 -21.83028 -20.57427 -20.11807 -18.88123 -18.56217 -18.20825 -17.34953 -16.83929 -16.72659 -16.60121 -16.00700 -15.90260 -15.52736 -15.34535 -14.98304 -14.95146 -14.86441 -14.68914 -14.61506 -14.32440 -14.07724 -13.63893 -13.51112 -13.08743 -13.07808 -12.81056 -12.58687 -12.58291 -12.40671 -12.36578 -12.27310 -12.22030 -11.98979 -11.84027 -11.76552 -11.51530 -11.35788 -11.31894 -10.79141 -10.61598 -9.93139 -9.84216 -9.06799 -8.21826 -6.31000 0.42112 1.14878 1.24525 1.42043 1.43377 1.48959 1.51270 1.84694 2.39387 3.08179 3.10963 3.14457 3.21445 3.47040 3.69157 3.82548 3.86691 3.91151 3.97972 3.99429 4.09904 4.18658 4.21610 4.40983 4.41835 4.50605 4.53127 4.57233 4.58917 4.67566 4.83335 4.88277 4.90875 4.99409 5.01136 5.07312 5.13074 5.18468 5.20123 5.21548 5.31466 5.35759 5.44421 5.54083 5.62973 6.02840 6.10834 6.27217 6.58837 6.80431 6.84430 7.38827 7.43073 8.88701 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.022553 B = 0.002376 C = 0.002294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.198166 B =11781.093707 C =12201.011074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.005 3.995 3 Si 0.963 3.037 4 H -0.270 1.270 5 H -0.285 1.285 6 H -0.268 1.268 7 C -0.525 4.525 8 H 0.063 0.937 9 C 0.210 3.790 10 N -0.542 5.542 11 C 0.034 3.966 12 C 0.113 3.887 13 N -0.599 5.599 14 C 0.502 3.498 15 O -0.577 6.577 16 C 0.093 3.907 17 N -0.269 5.269 18 N -0.123 5.123 19 N -0.297 5.297 20 C -0.039 4.039 21 C -0.005 4.005 22 C -0.048 4.048 23 C -0.115 4.115 24 C -0.111 4.111 25 C -0.034 4.034 26 C 0.127 3.873 27 C 0.059 3.941 28 H 0.264 0.736 29 H -0.039 1.039 30 H 0.013 0.987 31 H 0.094 0.906 32 H 0.028 0.972 33 H 0.094 0.906 34 H 0.131 0.869 35 H 0.167 0.833 36 H 0.175 0.825 37 H 0.074 0.926 38 H 0.115 0.885 39 H 0.054 0.946 40 H 0.101 0.899 41 H 0.097 0.903 42 H 0.076 0.924 43 H 0.079 0.921 44 H 0.089 0.911 45 H 0.081 0.919 46 H 0.082 0.918 47 H 0.014 0.986 48 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.282 -22.017 -5.242 22.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.194 4.194 3 Si 0.788 3.212 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.193 1.193 7 C -0.563 4.563 8 H 0.081 0.919 9 C 0.084 3.916 10 N -0.266 5.266 11 C -0.095 4.095 12 C -0.009 4.009 13 N -0.331 5.331 14 C 0.289 3.711 15 O -0.456 6.456 16 C -0.031 4.031 17 N -0.060 5.060 18 N -0.100 5.100 19 N -0.161 5.161 20 C -0.179 4.179 21 C -0.139 4.139 22 C -0.087 4.087 23 C -0.153 4.153 24 C -0.149 4.149 25 C -0.074 4.074 26 C 0.004 3.996 27 C -0.070 4.070 28 H 0.073 0.927 29 H -0.021 1.021 30 H 0.031 0.969 31 H 0.112 0.888 32 H 0.047 0.953 33 H 0.112 0.888 34 H 0.149 0.851 35 H 0.185 0.815 36 H 0.192 0.808 37 H 0.093 0.907 38 H 0.133 0.867 39 H 0.073 0.927 40 H 0.120 0.880 41 H 0.116 0.884 42 H 0.095 0.905 43 H 0.098 0.902 44 H 0.108 0.892 45 H 0.100 0.900 46 H 0.100 0.900 47 H 0.032 0.968 48 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 0.538 -22.130 -4.387 22.567 hybrid contribution -0.861 1.760 -1.036 2.216 sum -0.324 -20.370 -5.423 21.082 Atomic orbital electron populations 1.70054 1.07572 1.27931 1.51699 1.25831 0.95679 1.02947 0.94898 0.85526 0.78231 0.78385 0.79038 1.19559 1.21030 1.19305 1.21447 0.93648 0.91180 1.50073 0.91894 1.19343 0.89917 0.88524 0.93773 1.61990 1.27243 1.03464 1.33951 1.22579 0.95802 0.89558 1.01563 1.22236 0.90877 1.00102 0.87665 1.48229 1.46755 1.07557 1.30597 1.20871 0.81720 0.85892 0.82570 1.90776 1.39064 1.86061 1.29718 1.22307 1.03890 0.81259 0.95598 1.46538 1.17714 1.24067 1.17718 1.78486 1.06338 1.03931 1.21282 1.74709 1.21526 1.18499 1.01405 1.22304 0.94166 1.00372 1.01062 1.22410 1.01771 1.00008 0.89723 1.20428 0.91210 1.00149 0.96935 1.21617 1.03664 0.96494 0.93531 1.21625 0.93994 0.95564 1.03695 1.20127 0.98345 0.99651 0.89231 1.21644 0.94939 0.81332 1.01635 1.22217 0.95324 0.99151 0.90281 0.92695 1.02094 0.96864 0.88796 0.95326 0.88756 0.85149 0.81545 0.80775 0.90726 0.86722 0.92702 0.88032 0.88406 0.90500 0.90218 0.89227 0.90041 0.89969 0.96759 0.90508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.83 13.29 21.45 0.28 -53.55 16 2 C 0.00 0.27 5.46 84.66 0.46 0.73 16 3 Si 0.96 42.77 29.54 68.60 2.03 44.79 16 4 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 5 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 6 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 7 C -0.53 -28.09 8.41 25.60 0.22 -27.87 16 8 H 0.06 3.30 7.13 -2.91 -0.02 3.28 16 9 C 0.21 10.28 4.72 85.56 0.40 10.69 16 10 N -0.54 -20.36 4.62 -899.85 -4.16 -24.52 16 11 C 0.03 0.90 5.62 86.38 0.49 1.38 16 12 C 0.11 1.99 6.50 86.35 0.56 2.56 16 13 N -0.60 -14.23 3.01 -817.93 -2.46 -16.69 16 14 C 0.50 12.43 7.78 87.66 0.68 13.11 16 15 O -0.58 -20.27 15.88 -3.04 -0.05 -20.32 16 16 C 0.09 1.49 5.09 85.63 0.44 1.92 16 17 N -0.27 -6.46 2.82 -338.77 -0.95 -7.41 16 18 N -0.12 -3.81 13.19 37.02 0.49 -3.33 16 19 N -0.30 -9.38 12.40 -48.99 -0.61 -9.99 16 20 C -0.04 -0.96 7.11 41.75 0.30 -0.66 16 21 C 0.00 -0.10 6.77 41.50 0.28 0.18 16 22 C -0.05 -0.67 5.95 29.94 0.18 -0.49 16 23 C -0.12 -1.32 5.90 30.78 0.18 -1.14 16 24 C -0.11 -1.10 5.89 30.76 0.18 -0.92 16 25 C -0.03 -0.56 6.30 29.95 0.19 -0.37 16 26 C 0.13 3.74 6.60 86.35 0.57 4.31 16 27 C 0.06 2.11 5.46 86.38 0.47 2.59 16 28 H 0.26 14.46 8.31 -92.71 -0.77 13.69 16 29 H -0.04 -2.09 8.12 -2.39 -0.02 -2.11 16 30 H 0.01 0.69 7.97 -2.39 -0.02 0.67 16 31 H 0.09 2.37 7.99 -2.39 -0.02 2.35 16 32 H 0.03 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 34 H 0.13 0.98 6.02 -2.39 -0.01 0.96 16 35 H 0.17 1.68 8.00 -2.39 -0.02 1.66 16 36 H 0.18 1.25 7.48 -2.39 -0.02 1.23 16 37 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 38 H 0.11 0.94 8.14 -2.39 -0.02 0.93 16 39 H 0.05 0.82 8.12 -2.39 -0.02 0.80 16 40 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 41 H 0.10 0.58 8.14 -2.38 -0.02 0.56 16 42 H 0.08 0.66 8.12 -2.39 -0.02 0.64 16 43 H 0.08 1.30 8.14 -2.38 -0.02 1.28 16 44 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 45 H 0.08 2.54 7.06 -2.39 -0.02 2.53 16 46 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 47 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 48 H 0.08 3.06 6.67 -2.39 -0.02 3.04 16 Total: -1.00 -79.82 382.01 1.12 -78.70 By element: Atomic # 1 Polarization: 5.36 SS G_CDS: 0.95 Total: 6.31 kcal Atomic # 6 Polarization: 0.41 SS G_CDS: 5.59 Total: 6.01 kcal Atomic # 7 Polarization: -108.09 SS G_CDS: -7.41 Total: -115.50 kcal Atomic # 8 Polarization: -20.27 SS G_CDS: -0.05 Total: -20.32 kcal Atomic # 14 Polarization: 42.77 SS G_CDS: 2.03 Total: 44.79 kcal Total: -79.82 1.12 -78.70 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602202286.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.143 kcal (2) G-P(sol) polarization free energy of solvation -79.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.702 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds