Wall clock time and date at job start Tue Mar 31 2020 17:55:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86802 * 119.99922 * 2 1 4 4 H 1.48498 * 109.46970 * 269.99623 * 3 2 1 5 5 H 1.48498 * 109.47183 * 29.99933 * 3 2 1 6 6 H 1.48499 * 109.47172 * 149.99976 * 3 2 1 7 7 C 1.37880 * 119.99922 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99547 * 180.02562 * 7 2 1 9 9 C 1.50693 * 120.00133 * 0.02562 * 7 2 1 10 10 N 1.46901 * 109.46998 * 175.05968 * 9 7 2 11 11 C 1.46904 * 111.00152 * 295.16417 * 10 9 7 12 12 C 1.53238 * 109.33983 * 187.25286 * 11 10 9 13 13 N 1.47075 * 108.52259 * 306.17456 * 12 11 10 14 14 C 1.34779 * 120.88165 * 231.18861 * 13 12 11 15 15 O 1.21586 * 119.99903 * 184.99070 * 14 13 12 16 16 N 1.34774 * 119.99647 * 4.98601 * 14 13 12 17 17 C 1.46507 * 119.99587 * 174.86508 * 16 14 13 18 18 H 1.08991 * 109.74736 * 325.62053 * 17 16 14 19 19 C 1.53372 * 109.71208 * 204.99530 * 17 16 14 20 20 C 1.53026 * 109.74709 * 189.67249 * 19 17 16 21 21 C 1.53390 * 109.72077 * 71.73115 * 20 19 17 22 22 C 1.50886 * 108.19075 * 309.46500 * 21 20 19 23 23 C 1.34564 * 128.32138 * 196.52074 * 22 21 20 24 24 N 1.35198 * 107.61788 * 179.90479 * 23 22 21 25 25 H 0.97001 * 126.00725 * 180.02562 * 24 23 22 26 26 N 1.40311 * 107.99100 * 0.02920 * 24 23 22 27 27 C 1.30122 * 108.12339 * 0.04954 * 26 24 23 28 28 C 1.47082 * 118.23856 * 51.45593 * 13 12 11 29 29 C 1.46892 * 111.00032 * 59.47066 * 10 9 7 30 30 H 0.96997 * 119.99758 * 0.02562 * 1 2 3 31 31 H 1.09007 * 109.46670 * 55.06405 * 9 7 2 32 32 H 1.09000 * 109.47226 * 295.06436 * 9 7 2 33 33 H 1.09002 * 109.49274 * 67.29590 * 11 10 9 34 34 H 1.08995 * 109.49034 * 307.21574 * 11 10 9 35 35 H 1.08995 * 109.63257 * 186.46120 * 12 11 10 36 36 H 1.09006 * 109.62688 * 65.88184 * 12 11 10 37 37 H 0.96995 * 120.00016 * 354.85855 * 16 14 13 38 38 H 1.09006 * 109.42481 * 69.58992 * 19 17 16 39 39 H 1.08991 * 109.42978 * 309.76188 * 19 17 16 40 40 H 1.09003 * 109.42771 * 191.80846 * 20 19 17 41 41 H 1.09006 * 109.43030 * 311.65453 * 20 19 17 42 42 H 1.08999 * 109.71465 * 69.13338 * 21 20 19 43 43 H 1.08991 * 109.72124 * 189.78492 * 21 20 19 44 44 H 1.08001 * 126.19659 * 359.86446 * 23 22 21 45 45 H 1.08998 * 109.63112 * 68.25351 * 28 13 12 46 46 H 1.09003 * 109.62581 * 188.83391 * 28 13 12 47 47 H 1.09008 * 109.49508 * 292.70363 * 29 10 9 48 48 H 1.08997 * 109.49785 * 52.78290 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2013 -3.6131 -0.1181 11 6 2.8924 -3.5799 -1.4140 12 6 3.7347 -4.8501 -1.5727 13 7 4.6152 -4.9762 -0.4013 14 6 5.9402 -5.1734 -0.5499 15 8 6.6393 -5.3659 0.4260 16 7 6.4900 -5.1572 -1.7803 17 6 7.9434 -5.2589 -1.9344 18 1 8.4379 -4.7530 -1.1052 19 6 8.3692 -4.6165 -3.2604 20 6 9.8409 -4.9306 -3.5380 21 6 9.9922 -6.4096 -3.9155 22 6 9.2863 -7.2372 -2.8698 23 6 9.4104 -8.5545 -2.6245 24 7 8.5874 -8.8585 -1.5959 25 1 8.4682 -9.7366 -1.2014 26 7 7.9359 -7.6808 -1.1994 27 6 8.3523 -6.7117 -1.9615 28 6 4.0105 -4.8873 0.9365 29 6 3.1582 -3.6098 0.9964 30 1 -0.4849 0.8400 -0.0004 31 1 0.5601 -2.5197 -0.8423 32 1 0.6920 -2.5959 0.9312 33 1 3.5414 -2.7052 -1.4578 34 1 2.1572 -3.5283 -2.2170 35 1 4.3376 -4.7790 -2.4779 36 1 3.0793 -5.7189 -1.6332 37 1 5.9235 -5.0783 -2.5636 38 1 8.2342 -3.5365 -3.1999 39 1 7.7552 -5.0128 -4.0689 40 1 10.1957 -4.3085 -4.3598 41 1 10.4309 -4.7220 -2.6455 42 1 9.5413 -6.5880 -4.8916 43 1 11.0487 -6.6758 -3.9436 44 1 10.0510 -9.2442 -3.1540 45 1 3.3811 -5.7596 1.1125 46 1 4.7960 -4.8408 1.6909 47 1 3.8036 -2.7347 0.9191 48 1 2.6159 -3.5799 1.9414 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602277287.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:55:07 Heat of formation + Delta-G solvation = 58.329882 kcal Electronic energy + Delta-G solvation = -29348.522007 eV Core-core repulsion = 25440.034971 eV Total energy + Delta-G solvation = -3908.487036 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.63979 -39.98289 -37.77922 -36.77333 -34.33744 -34.14999 -32.31150 -31.38905 -30.65031 -30.20457 -28.46930 -27.55371 -25.29159 -24.33022 -23.03451 -22.44106 -22.07413 -21.16493 -20.40415 -19.32258 -18.96576 -17.73436 -17.71010 -16.33994 -16.30631 -15.64719 -15.13274 -14.97136 -14.74822 -14.39688 -14.35335 -14.09920 -13.97703 -13.79709 -13.53556 -13.48052 -13.10200 -12.90408 -12.55219 -12.30394 -12.02207 -11.80232 -11.68063 -11.19835 -11.13749 -11.06387 -11.00497 -10.93159 -10.63048 -10.59560 -10.46942 -10.22777 -9.91866 -9.74192 -9.60201 -9.53718 -9.09421 -8.59283 -8.45737 -8.19517 -7.21803 -6.05428 -4.14790 1.79176 2.47419 2.72415 3.00778 3.25691 3.33115 3.36863 3.53498 4.04322 4.27557 4.38852 4.54104 4.63614 4.70667 4.93800 4.98596 5.08994 5.20959 5.24809 5.32721 5.39128 5.47847 5.50391 5.53866 5.58654 5.66060 5.76609 5.82154 5.85175 5.97199 5.98390 6.03857 6.07806 6.21666 6.45897 6.46514 6.59467 6.64701 6.77203 6.81957 7.15270 7.22280 7.23176 7.49388 7.63210 7.86622 7.98570 8.19593 8.21992 8.27008 8.90114 8.95507 9.52590 10.99579 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.018414 B = 0.002767 C = 0.002546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1520.217286 B =10117.691504 C =10995.007607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.066 3.934 3 Si 0.888 3.112 4 H -0.280 1.280 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.551 4.551 8 H 0.056 0.944 9 C 0.188 3.812 10 N -0.540 5.540 11 C 0.051 3.949 12 C 0.117 3.883 13 N -0.624 5.624 14 C 0.712 3.288 15 O -0.585 6.585 16 N -0.741 5.741 17 C 0.248 3.752 18 H 0.103 0.897 19 C -0.122 4.122 20 C -0.114 4.114 21 C -0.040 4.040 22 C -0.236 4.236 23 C 0.053 3.947 24 N -0.489 5.489 25 H 0.437 0.563 26 N -0.249 5.249 27 C 0.066 3.934 28 C 0.135 3.865 29 C 0.050 3.950 30 H 0.262 0.738 31 H 0.035 0.965 32 H 0.030 0.970 33 H 0.042 0.958 34 H 0.076 0.924 35 H 0.067 0.933 36 H 0.069 0.931 37 H 0.395 0.605 38 H 0.081 0.919 39 H 0.072 0.928 40 H 0.073 0.927 41 H 0.068 0.932 42 H 0.069 0.931 43 H 0.069 0.931 44 H 0.173 0.827 45 H 0.064 0.936 46 H 0.086 0.914 47 H 0.043 0.957 48 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.918 -15.535 -10.364 26.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.137 4.137 3 Si 0.716 3.284 4 H -0.206 1.206 5 H -0.211 1.211 6 H -0.199 1.199 7 C -0.590 4.590 8 H 0.075 0.925 9 C 0.062 3.938 10 N -0.264 5.264 11 C -0.079 4.079 12 C -0.007 4.007 13 N -0.361 5.361 14 C 0.414 3.586 15 O -0.463 6.463 16 N -0.399 5.399 17 C 0.139 3.861 18 H 0.121 0.879 19 C -0.161 4.161 20 C -0.152 4.152 21 C -0.078 4.078 22 C -0.248 4.248 23 C -0.093 4.093 24 N -0.198 5.198 25 H 0.280 0.720 26 N -0.070 5.070 27 C -0.105 4.105 28 C 0.012 3.988 29 C -0.080 4.080 30 H 0.072 0.928 31 H 0.053 0.947 32 H 0.048 0.952 33 H 0.061 0.939 34 H 0.095 0.905 35 H 0.085 0.915 36 H 0.087 0.913 37 H 0.232 0.768 38 H 0.099 0.901 39 H 0.091 0.909 40 H 0.091 0.909 41 H 0.087 0.913 42 H 0.087 0.913 43 H 0.088 0.912 44 H 0.190 0.810 45 H 0.082 0.918 46 H 0.105 0.895 47 H 0.061 0.939 48 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 18.222 -16.302 -8.625 25.926 hybrid contribution 0.984 1.382 -0.937 1.938 sum 19.206 -14.920 -9.562 26.133 Atomic orbital electron populations 1.69939 1.06006 1.26873 1.50078 1.24957 0.94755 0.99149 0.94853 0.86651 0.79981 0.83620 0.78131 1.20645 1.21107 1.19933 1.21754 0.93317 0.92101 1.51798 0.92545 1.19763 0.90715 0.85360 0.97944 1.62466 1.16643 1.46901 1.00436 1.22212 0.96784 0.94909 0.93962 1.21809 0.92426 0.99601 0.86862 1.47312 1.04878 1.75752 1.08141 1.15744 0.81901 0.77556 0.83406 1.90891 1.60757 1.56608 1.38008 1.45201 1.06746 1.80486 1.07421 1.19166 0.80377 0.87399 0.99110 0.87900 1.21836 0.97284 1.01241 0.95735 1.21515 0.95564 0.95949 1.02147 1.19997 0.98999 0.93151 0.95688 1.20105 1.06597 0.93502 1.04613 1.22014 0.97289 0.96943 0.93028 1.46555 1.34682 1.10428 1.28095 0.71961 1.77335 1.17914 0.90788 1.20949 1.22829 0.96734 0.96667 0.94305 1.21776 0.96077 0.98307 0.82651 1.22365 0.94401 0.95406 0.95786 0.92783 0.94728 0.95227 0.93930 0.90539 0.91460 0.91288 0.76782 0.90079 0.90884 0.90850 0.91312 0.91276 0.91222 0.81028 0.91789 0.89529 0.93883 0.90455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.89 13.29 55.43 0.74 -25.15 16 2 C 0.07 1.82 5.46 -17.82 -0.10 1.73 16 3 Si 0.89 21.35 29.54 -169.99 -5.02 16.33 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 5 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.55 -14.91 7.76 -34.44 -0.27 -15.17 16 8 H 0.06 1.54 5.88 -52.48 -0.31 1.23 16 9 C 0.19 4.72 5.11 -4.98 -0.03 4.69 16 10 N -0.54 -11.26 4.83 -235.47 -1.14 -12.40 16 11 C 0.05 0.93 5.25 -3.70 -0.02 0.91 16 12 C 0.12 1.72 6.59 -3.61 -0.02 1.70 16 13 N -0.62 -10.46 3.00 -177.91 -0.53 -10.99 16 14 C 0.71 12.28 8.28 -86.92 -0.72 11.56 16 15 O -0.59 -12.05 15.53 5.29 0.08 -11.97 16 16 N -0.74 -9.97 4.99 -59.50 -0.30 -10.27 16 17 C 0.25 3.00 2.79 -68.76 -0.19 2.81 16 18 H 0.10 1.44 7.65 -51.93 -0.40 1.04 16 19 C -0.12 -1.01 5.35 -26.52 -0.14 -1.15 16 20 C -0.11 -0.78 5.87 -26.52 -0.16 -0.93 16 21 C -0.04 -0.27 6.28 -27.59 -0.17 -0.45 16 22 C -0.24 -2.30 5.89 -104.99 -0.62 -2.92 16 23 C 0.05 0.44 11.95 -17.37 -0.21 0.23 16 24 N -0.49 -4.97 7.37 30.35 0.22 -4.75 16 25 H 0.44 3.10 8.96 -182.44 -1.64 1.46 16 26 N -0.25 -3.64 12.68 33.75 0.43 -3.22 16 27 C 0.07 0.85 6.68 -82.35 -0.55 0.30 16 28 C 0.14 2.36 6.61 -3.36 -0.02 2.33 16 29 C 0.05 0.98 5.17 -3.47 -0.02 0.97 16 30 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 31 H 0.03 0.93 8.07 -51.93 -0.42 0.51 16 32 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.04 0.87 7.11 -51.93 -0.37 0.50 16 34 H 0.08 1.36 8.06 -51.93 -0.42 0.94 16 35 H 0.07 0.79 5.63 -51.93 -0.29 0.50 16 36 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 37 H 0.40 4.47 6.11 -40.82 -0.25 4.22 16 38 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.07 0.55 8.10 -51.93 -0.42 0.13 16 40 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 41 H 0.07 0.51 8.10 -51.93 -0.42 0.09 16 42 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 44 H 0.17 0.73 8.06 -52.49 -0.42 0.31 16 45 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 46 H 0.09 1.55 7.09 -51.93 -0.37 1.18 16 47 H 0.04 0.95 6.62 -51.92 -0.34 0.60 16 48 H 0.08 1.51 8.11 -51.93 -0.42 1.09 16 LS Contribution 376.43 15.07 5.67 5.67 Total: -1.00 -34.92 376.43 -11.66 -46.57 By element: Atomic # 1 Polarization: 12.14 SS G_CDS: -8.58 Total: 3.56 kcal Atomic # 6 Polarization: 9.84 SS G_CDS: -3.23 Total: 6.61 kcal Atomic # 7 Polarization: -66.19 SS G_CDS: -0.58 Total: -66.77 kcal Atomic # 8 Polarization: -12.05 SS G_CDS: 0.08 Total: -11.97 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -34.92 -11.66 -46.57 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602277287.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.904 kcal (2) G-P(sol) polarization free energy of solvation -34.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.574 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds