Wall clock time and date at job start Tue Mar 31 2020 17:55:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86802 * 119.99922 * 2 1 4 4 H 1.48498 * 109.46970 * 269.99623 * 3 2 1 5 5 H 1.48498 * 109.47183 * 29.99933 * 3 2 1 6 6 H 1.48499 * 109.47172 * 149.99976 * 3 2 1 7 7 C 1.37880 * 119.99922 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99547 * 180.02562 * 7 2 1 9 9 C 1.50693 * 120.00133 * 0.02562 * 7 2 1 10 10 N 1.46901 * 109.46998 * 175.05968 * 9 7 2 11 11 C 1.46904 * 111.00152 * 295.16417 * 10 9 7 12 12 C 1.53238 * 109.33983 * 187.25286 * 11 10 9 13 13 N 1.47075 * 108.52259 * 306.17456 * 12 11 10 14 14 C 1.34779 * 120.88165 * 231.18861 * 13 12 11 15 15 O 1.21586 * 119.99903 * 184.99070 * 14 13 12 16 16 N 1.34774 * 119.99647 * 4.98601 * 14 13 12 17 17 C 1.46507 * 119.99587 * 174.86508 * 16 14 13 18 18 H 1.08991 * 109.74736 * 325.62053 * 17 16 14 19 19 C 1.53372 * 109.71208 * 204.99530 * 17 16 14 20 20 C 1.53026 * 109.74709 * 189.67249 * 19 17 16 21 21 C 1.53390 * 109.72077 * 71.73115 * 20 19 17 22 22 C 1.50886 * 108.19075 * 309.46500 * 21 20 19 23 23 C 1.34564 * 128.32138 * 196.52074 * 22 21 20 24 24 N 1.35198 * 107.61788 * 179.90479 * 23 22 21 25 25 H 0.97001 * 126.00725 * 180.02562 * 24 23 22 26 26 N 1.40311 * 107.99100 * 0.02920 * 24 23 22 27 27 C 1.30122 * 108.12339 * 0.04954 * 26 24 23 28 28 C 1.47082 * 118.23856 * 51.45593 * 13 12 11 29 29 C 1.46892 * 111.00032 * 59.47066 * 10 9 7 30 30 H 0.96997 * 119.99758 * 0.02562 * 1 2 3 31 31 H 1.09007 * 109.46670 * 55.06405 * 9 7 2 32 32 H 1.09000 * 109.47226 * 295.06436 * 9 7 2 33 33 H 1.09002 * 109.49274 * 67.29590 * 11 10 9 34 34 H 1.08995 * 109.49034 * 307.21574 * 11 10 9 35 35 H 1.08995 * 109.63257 * 186.46120 * 12 11 10 36 36 H 1.09006 * 109.62688 * 65.88184 * 12 11 10 37 37 H 0.96995 * 120.00016 * 354.85855 * 16 14 13 38 38 H 1.09006 * 109.42481 * 69.58992 * 19 17 16 39 39 H 1.08991 * 109.42978 * 309.76188 * 19 17 16 40 40 H 1.09003 * 109.42771 * 191.80846 * 20 19 17 41 41 H 1.09006 * 109.43030 * 311.65453 * 20 19 17 42 42 H 1.08999 * 109.71465 * 69.13338 * 21 20 19 43 43 H 1.08991 * 109.72124 * 189.78492 * 21 20 19 44 44 H 1.08001 * 126.19659 * 359.86446 * 23 22 21 45 45 H 1.08998 * 109.63112 * 68.25351 * 28 13 12 46 46 H 1.09003 * 109.62581 * 188.83391 * 28 13 12 47 47 H 1.09008 * 109.49508 * 292.70363 * 29 10 9 48 48 H 1.08997 * 109.49785 * 52.78290 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2013 -3.6131 -0.1181 11 6 2.8924 -3.5799 -1.4140 12 6 3.7347 -4.8501 -1.5727 13 7 4.6152 -4.9762 -0.4013 14 6 5.9402 -5.1734 -0.5499 15 8 6.6393 -5.3659 0.4260 16 7 6.4900 -5.1572 -1.7803 17 6 7.9434 -5.2589 -1.9344 18 1 8.4379 -4.7530 -1.1052 19 6 8.3692 -4.6165 -3.2604 20 6 9.8409 -4.9306 -3.5380 21 6 9.9922 -6.4096 -3.9155 22 6 9.2863 -7.2372 -2.8698 23 6 9.4104 -8.5545 -2.6245 24 7 8.5874 -8.8585 -1.5959 25 1 8.4682 -9.7366 -1.2014 26 7 7.9359 -7.6808 -1.1994 27 6 8.3523 -6.7117 -1.9615 28 6 4.0105 -4.8873 0.9365 29 6 3.1582 -3.6098 0.9964 30 1 -0.4849 0.8400 -0.0004 31 1 0.5601 -2.5197 -0.8423 32 1 0.6920 -2.5959 0.9312 33 1 3.5414 -2.7052 -1.4578 34 1 2.1572 -3.5283 -2.2170 35 1 4.3376 -4.7790 -2.4779 36 1 3.0793 -5.7189 -1.6332 37 1 5.9235 -5.0783 -2.5636 38 1 8.2342 -3.5365 -3.1999 39 1 7.7552 -5.0128 -4.0689 40 1 10.1957 -4.3085 -4.3598 41 1 10.4309 -4.7220 -2.6455 42 1 9.5413 -6.5880 -4.8916 43 1 11.0487 -6.6758 -3.9436 44 1 10.0510 -9.2442 -3.1540 45 1 3.3811 -5.7596 1.1125 46 1 4.7960 -4.8408 1.6909 47 1 3.8036 -2.7347 0.9191 48 1 2.6159 -3.5799 1.9414 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602277287.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:55:06 Heat of formation + Delta-G solvation = 32.496436 kcal Electronic energy + Delta-G solvation = -29349.642230 eV Core-core repulsion = 25440.034971 eV Total energy + Delta-G solvation = -3909.607259 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.42585 -41.30000 -39.21711 -37.72190 -35.98096 -35.17193 -34.26126 -32.41149 -31.82959 -31.10788 -29.87899 -28.73477 -27.05335 -25.19777 -24.48136 -24.12456 -22.84399 -22.27436 -21.60710 -20.53889 -19.97949 -19.06765 -18.40911 -18.31830 -17.48945 -16.81876 -16.67377 -16.10964 -16.03988 -15.92768 -15.52938 -15.28277 -15.15535 -15.08370 -14.71604 -14.52255 -14.28909 -13.90720 -13.65515 -13.58816 -13.48056 -13.01023 -12.93702 -12.87102 -12.53668 -12.45381 -12.36142 -12.22283 -11.95264 -11.82019 -11.79406 -11.64313 -11.61866 -11.28756 -11.05889 -10.61325 -10.42887 -10.27895 -9.59429 -9.27829 -9.02625 -8.16989 -6.36233 1.04181 1.34872 1.36700 1.46650 1.53616 1.93438 2.01418 2.25087 2.36039 2.90726 3.08070 3.31276 3.56428 3.82803 3.98377 4.03788 4.08370 4.11669 4.19831 4.36018 4.40210 4.45807 4.51123 4.54248 4.60960 4.66844 4.76929 4.85342 4.89034 4.94219 5.01040 5.05262 5.18448 5.20045 5.22300 5.31001 5.32714 5.36056 5.45430 5.49209 5.56379 5.72575 5.76723 5.92313 6.03820 6.22447 6.46027 6.55011 6.83008 6.83957 6.97596 7.35394 7.59221 8.85304 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.018414 B = 0.002767 C = 0.002546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1520.217286 B =10117.691504 C =10995.007607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.015 3.985 3 Si 0.954 3.046 4 H -0.270 1.270 5 H -0.280 1.280 6 H -0.274 1.274 7 C -0.557 4.557 8 H 0.051 0.949 9 C 0.201 3.799 10 N -0.537 5.537 11 C 0.052 3.948 12 C 0.127 3.873 13 N -0.629 5.629 14 C 0.708 3.292 15 O -0.624 6.624 16 N -0.727 5.727 17 C 0.242 3.758 18 H 0.074 0.926 19 C -0.114 4.114 20 C -0.112 4.112 21 C -0.036 4.036 22 C -0.250 4.250 23 C 0.066 3.934 24 N -0.487 5.487 25 H 0.447 0.553 26 N -0.312 5.312 27 C 0.049 3.951 28 C 0.146 3.854 29 C 0.058 3.942 30 H 0.266 0.734 31 H 0.015 0.985 32 H 0.005 0.995 33 H 0.021 0.979 34 H 0.082 0.918 35 H 0.102 0.898 36 H 0.083 0.917 37 H 0.407 0.593 38 H 0.085 0.915 39 H 0.086 0.914 40 H 0.097 0.903 41 H 0.057 0.943 42 H 0.083 0.917 43 H 0.087 0.913 44 H 0.217 0.783 45 H 0.078 0.922 46 H 0.080 0.920 47 H 0.016 0.984 48 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.008 -16.331 -12.955 29.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.184 4.184 3 Si 0.779 3.221 4 H -0.195 1.195 5 H -0.206 1.206 6 H -0.199 1.199 7 C -0.596 4.596 8 H 0.069 0.931 9 C 0.075 3.925 10 N -0.261 5.261 11 C -0.077 4.077 12 C 0.004 3.996 13 N -0.366 5.366 14 C 0.410 3.590 15 O -0.504 6.504 16 N -0.384 5.384 17 C 0.135 3.865 18 H 0.092 0.908 19 C -0.152 4.152 20 C -0.150 4.150 21 C -0.074 4.074 22 C -0.262 4.262 23 C -0.079 4.079 24 N -0.197 5.197 25 H 0.292 0.708 26 N -0.135 5.135 27 C -0.121 4.121 28 C 0.023 3.977 29 C -0.072 4.072 30 H 0.075 0.925 31 H 0.033 0.967 32 H 0.023 0.977 33 H 0.039 0.961 34 H 0.101 0.899 35 H 0.120 0.880 36 H 0.102 0.898 37 H 0.246 0.754 38 H 0.103 0.897 39 H 0.104 0.896 40 H 0.116 0.884 41 H 0.076 0.924 42 H 0.102 0.898 43 H 0.105 0.895 44 H 0.234 0.766 45 H 0.096 0.904 46 H 0.098 0.902 47 H 0.035 0.965 48 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 20.322 -17.110 -11.262 28.854 hybrid contribution 0.366 1.545 -0.117 1.592 sum 20.688 -15.565 -11.380 28.280 Atomic orbital electron populations 1.70046 1.07397 1.27892 1.50938 1.25749 0.95570 1.02606 0.94508 0.85625 0.78504 0.79447 0.78530 1.19535 1.20578 1.19927 1.21947 0.93117 0.93125 1.51420 0.93115 1.19427 0.91054 0.86322 0.95723 1.62404 1.16939 1.44629 1.02091 1.22275 0.96778 0.96060 0.92597 1.21847 0.92331 0.97995 0.87438 1.47362 1.05160 1.75728 1.08303 1.15928 0.81672 0.77314 0.84075 1.90859 1.61600 1.58320 1.39622 1.45112 1.07685 1.79215 1.06432 1.19359 0.79051 0.87864 1.00242 0.90810 1.21839 0.98618 1.01106 0.93686 1.21543 0.94129 0.96765 1.02577 1.20076 0.99809 0.92239 0.95240 1.20528 1.06367 0.94339 1.04945 1.22744 0.96214 0.97297 0.91683 1.46582 1.34542 1.10024 1.28514 0.70801 1.77227 1.20589 0.92597 1.23049 1.22990 0.97709 0.96398 0.95045 1.21568 0.95547 0.97258 0.83372 1.22291 0.93811 0.95701 0.95355 0.92531 0.96677 0.97706 0.96101 0.89922 0.87964 0.89842 0.75444 0.89673 0.89555 0.88432 0.92403 0.89816 0.89451 0.76623 0.90429 0.90197 0.96547 0.90772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.41 13.29 21.45 0.28 -54.12 16 2 C 0.02 0.87 5.46 84.66 0.46 1.33 16 3 Si 0.95 44.04 29.54 68.60 2.03 46.07 16 4 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 5 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 6 H -0.27 -12.57 7.11 99.48 0.71 -11.87 16 7 C -0.56 -30.78 7.76 25.60 0.20 -30.58 16 8 H 0.05 2.82 5.88 -2.91 -0.02 2.81 16 9 C 0.20 10.43 5.11 85.55 0.44 10.87 16 10 N -0.54 -22.71 4.83 -898.89 -4.34 -27.05 16 11 C 0.05 1.89 5.25 86.38 0.45 2.34 16 12 C 0.13 3.54 6.59 86.35 0.57 4.11 16 13 N -0.63 -20.83 3.00 -835.05 -2.51 -23.34 16 14 C 0.71 24.54 8.28 179.05 1.48 26.02 16 15 O -0.62 -26.49 15.53 -3.99 -0.06 -26.55 16 16 N -0.73 -19.11 4.99 -460.42 -2.30 -21.41 16 17 C 0.24 5.81 2.79 44.45 0.12 5.94 16 18 H 0.07 2.17 7.65 -2.39 -0.02 2.15 16 19 C -0.11 -1.67 5.35 30.73 0.16 -1.50 16 20 C -0.11 -1.24 5.87 30.73 0.18 -1.06 16 21 C -0.04 -0.36 6.28 30.04 0.19 -0.17 16 22 C -0.25 -4.30 5.89 -20.10 -0.12 -4.42 16 23 C 0.07 0.91 11.95 83.33 1.00 1.91 16 24 N -0.49 -9.29 7.37 -57.89 -0.43 -9.71 16 25 H 0.45 5.86 8.96 -213.18 -1.91 3.95 16 26 N -0.31 -9.13 12.68 -47.14 -0.60 -9.73 16 27 C 0.05 1.22 6.68 43.44 0.29 1.51 16 28 C 0.15 5.14 6.61 86.50 0.57 5.72 16 29 C 0.06 2.34 5.17 86.54 0.45 2.79 16 30 H 0.27 14.76 8.31 -92.71 -0.77 13.99 16 31 H 0.02 0.84 8.07 -2.38 -0.02 0.82 16 32 H 0.00 0.27 8.14 -2.39 -0.02 0.25 16 33 H 0.02 0.85 7.11 -2.39 -0.02 0.83 16 34 H 0.08 2.89 8.06 -2.39 -0.02 2.87 16 35 H 0.10 2.14 5.63 -2.39 -0.01 2.13 16 36 H 0.08 2.18 8.14 -2.38 -0.02 2.16 16 37 H 0.41 8.44 6.11 -92.71 -0.57 7.88 16 38 H 0.08 1.17 8.14 -2.38 -0.02 1.15 16 39 H 0.09 1.05 8.10 -2.39 -0.02 1.03 16 40 H 0.10 0.64 8.14 -2.39 -0.02 0.63 16 41 H 0.06 0.77 8.10 -2.38 -0.02 0.75 16 42 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 43 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 44 H 0.22 0.83 8.06 -2.91 -0.02 0.81 16 45 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 46 H 0.08 2.94 7.09 -2.39 -0.02 2.93 16 47 H 0.02 0.75 6.62 -2.38 -0.02 0.73 16 48 H 0.07 3.00 8.11 -2.39 -0.02 2.98 16 Total: -1.00 -78.63 376.43 -2.96 -81.58 By element: Atomic # 1 Polarization: 20.94 SS G_CDS: -1.48 Total: 19.46 kcal Atomic # 6 Polarization: 18.35 SS G_CDS: 6.45 Total: 24.80 kcal Atomic # 7 Polarization: -135.47 SS G_CDS: -9.89 Total: -145.36 kcal Atomic # 8 Polarization: -26.49 SS G_CDS: -0.06 Total: -26.55 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.07 kcal Total: -78.63 -2.96 -81.58 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602277287.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.079 kcal (2) G-P(sol) polarization free energy of solvation -78.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.582 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds