Wall clock time and date at job start Tue Mar 31 2020 17:13:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.47275 * 2 1 4 4 C 1.53009 * 109.46816 * 240.00213 * 2 1 3 5 5 C 1.50703 * 109.46865 * 64.99894 * 4 2 1 6 6 H 1.07995 * 120.00422 * 0.02562 * 5 4 2 7 7 C 1.37878 * 119.99659 * 179.97438 * 5 4 2 8 8 N 1.31509 * 120.00180 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99742 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47388 * 90.00335 * 9 7 5 11 11 H 1.48501 * 109.47120 * 210.00522 * 9 7 5 12 12 H 1.48507 * 109.47311 * 330.00055 * 9 7 5 13 13 C 1.53001 * 109.47466 * 120.00379 * 2 1 3 14 14 N 1.46894 * 109.46988 * 294.99847 * 13 2 1 15 15 C 1.46900 * 110.99788 * 179.97438 * 14 13 2 16 16 C 1.53010 * 109.47011 * 179.97438 * 15 14 13 17 17 N 1.46900 * 109.47011 * 179.97438 * 16 15 14 18 18 C 1.46903 * 110.99653 * 170.00058 * 17 16 15 19 19 C 1.53241 * 109.33631 * 187.25275 * 18 17 16 20 20 N 1.47075 * 108.52094 * 306.17105 * 19 18 17 21 21 S 1.65599 * 120.87816 * 231.18527 * 20 19 18 22 22 C 1.81397 * 104.44825 * 90.00229 * 21 20 19 23 23 O 1.42105 * 104.27797 * 206.07341 * 21 20 19 24 24 O 1.42101 * 104.27901 * 333.93049 * 21 20 19 25 25 C 1.47077 * 118.23886 * 51.45978 * 20 19 18 26 26 C 1.46893 * 111.00047 * 294.29927 * 17 16 15 27 27 H 1.08996 * 109.47100 * 59.99455 * 1 2 3 28 28 H 1.09000 * 109.47275 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46431 * 299.99687 * 1 2 3 30 30 H 1.08997 * 109.46756 * 184.99779 * 4 2 1 31 31 H 1.08992 * 109.46898 * 304.99940 * 4 2 1 32 32 H 0.97004 * 120.00301 * 179.97438 * 8 7 5 33 33 H 1.09003 * 109.47254 * 174.99600 * 13 2 1 34 34 H 1.08999 * 109.46702 * 54.99716 * 13 2 1 35 35 H 1.00898 * 111.00117 * 56.04719 * 14 13 2 36 36 H 1.08993 * 109.47166 * 60.00560 * 15 14 13 37 37 H 1.08994 * 109.47264 * 299.99859 * 15 14 13 38 38 H 1.08995 * 109.46964 * 59.99840 * 16 15 14 39 39 H 1.09007 * 109.46742 * 300.00102 * 16 15 14 40 40 H 1.08998 * 109.49149 * 67.29677 * 18 17 16 41 41 H 1.08998 * 109.49119 * 307.20997 * 18 17 16 42 42 H 1.09000 * 109.62511 * 186.45793 * 19 18 17 43 43 H 1.09009 * 109.62732 * 65.88429 * 19 18 17 44 44 H 1.09003 * 109.47352 * 180.02562 * 22 21 20 45 45 H 1.09004 * 109.47032 * 299.99803 * 22 21 20 46 46 H 1.09000 * 109.47124 * 60.00075 * 22 21 20 47 47 H 1.08999 * 109.62966 * 68.25482 * 25 20 19 48 48 H 1.09003 * 109.62478 * 188.82972 * 25 20 19 49 49 H 1.08998 * 109.49955 * 292.71056 * 26 17 16 50 50 H 1.09008 * 109.49312 * 52.79138 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2494 5 6 1.6412 0.0571 -2.4766 6 1 1.0806 0.9746 -2.3757 7 6 1.9930 -0.4016 -3.7284 8 7 2.6761 -1.5186 -3.8513 9 14 1.4994 0.5636 -5.2496 10 1 2.5649 1.5432 -5.5818 11 1 1.3125 -0.3700 -6.3892 12 1 0.2281 1.2850 -4.9872 13 6 2.0401 -0.7213 1.2492 14 7 1.6515 0.0373 2.4456 15 6 2.1250 -0.6274 3.6671 16 6 1.7027 0.1907 4.8892 17 7 2.1756 -0.4742 6.1107 18 6 1.9996 0.3925 7.2837 19 6 2.6660 -0.2587 8.5003 20 7 2.1356 -1.6223 8.6494 21 16 1.5359 -2.1470 10.1011 22 6 -0.2258 -1.7185 10.0445 23 8 1.7076 -3.5571 10.0623 24 8 2.2114 -1.3530 11.0669 25 6 2.1576 -2.5097 7.4767 26 6 1.5058 -1.7680 6.2989 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3632 0.5138 0.8901 30 1 3.1262 -0.7994 -1.2057 31 1 1.6053 -1.7197 -1.2952 32 1 2.9234 -1.8415 -4.7320 33 1 3.1264 -0.7996 1.2054 34 1 1.6054 -1.7198 1.2950 35 1 0.6530 0.1791 2.4753 36 1 3.2118 -0.7052 3.6404 37 1 1.6906 -1.6251 3.7295 38 1 0.6159 0.2691 4.9161 39 1 2.1375 1.1883 4.8265 40 1 0.9360 0.5270 7.4802 41 1 2.4601 1.3617 7.0921 42 1 2.4412 0.3216 9.3952 43 1 3.7447 -0.2998 8.3487 44 1 -0.7058 -2.0310 10.9719 45 1 -0.3339 -0.6404 9.9253 46 1 -0.6963 -2.2262 9.2025 47 1 3.1883 -2.7632 7.2286 48 1 1.5964 -3.4184 7.6946 49 1 0.4490 -1.6034 6.5091 50 1 1.6081 -2.3657 5.3930 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602551865.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:13:58 Heat of formation + Delta-G solvation = -68.718421 kcal Electronic energy + Delta-G solvation = -26758.376259 eV Core-core repulsion = 22947.531195 eV Total energy + Delta-G solvation = -3810.845064 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -39.51640 -37.63460 -37.16372 -36.42195 -35.41763 -33.66809 -31.99267 -31.59622 -30.01864 -29.09192 -26.91632 -26.12310 -24.62015 -24.27162 -22.34849 -21.64932 -21.01511 -19.26374 -18.95066 -18.22104 -16.84801 -16.68418 -16.46967 -16.08081 -15.69071 -15.25630 -15.08773 -15.05746 -14.69775 -14.52103 -13.99935 -13.82440 -13.73561 -13.57810 -13.53242 -13.04857 -12.76277 -12.57565 -12.50944 -12.32772 -12.21507 -12.16587 -11.83104 -11.75382 -11.64269 -11.46377 -11.38319 -11.20420 -10.98077 -10.90364 -10.70224 -10.34480 -10.21181 -9.73292 -9.60769 -9.16626 -8.97265 -8.68195 -8.33485 -8.17797 -5.98068 -3.99294 -0.26217 2.08736 3.32647 3.35741 3.38911 3.39681 3.41961 3.59817 4.01713 4.27776 4.34145 4.43006 4.49100 4.61454 4.71359 4.72364 4.81192 4.88641 5.02832 5.10083 5.10366 5.22848 5.26036 5.37688 5.45478 5.48115 5.57875 5.62372 5.70917 5.74151 5.85967 5.95109 6.02435 6.03990 6.23629 6.43733 6.53520 6.66414 6.68643 6.92079 7.08521 7.15541 7.33305 7.60435 7.69476 7.85171 8.02069 8.45758 9.07055 9.64083 11.13396 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.037813 B = 0.001624 C = 0.001609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.316416 B =17237.152966 C =17392.762712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.085 4.085 3 H 0.065 0.935 4 C 0.028 3.972 5 C -0.513 4.513 6 H 0.056 0.944 7 C 0.055 3.945 8 N -0.896 5.896 9 Si 0.891 3.109 10 H -0.281 1.281 11 H -0.288 1.288 12 H -0.275 1.275 13 C 0.067 3.933 14 N -0.691 5.691 15 C 0.061 3.939 16 C 0.059 3.941 17 N -0.534 5.534 18 C 0.041 3.959 19 C 0.127 3.873 20 N -1.002 6.002 21 S 2.611 3.389 22 C -0.675 4.675 23 O -0.954 6.954 24 O -0.955 6.955 25 C 0.127 3.873 26 C 0.035 3.965 27 H 0.063 0.937 28 H 0.040 0.960 29 H 0.030 0.970 30 H 0.015 0.985 31 H 0.014 0.986 32 H 0.259 0.741 33 H 0.068 0.932 34 H 0.023 0.977 35 H 0.335 0.665 36 H 0.079 0.921 37 H 0.025 0.975 38 H 0.031 0.969 39 H 0.086 0.914 40 H 0.036 0.964 41 H 0.090 0.910 42 H 0.093 0.907 43 H 0.084 0.916 44 H 0.127 0.873 45 H 0.126 0.874 46 H 0.127 0.873 47 H 0.084 0.916 48 H 0.093 0.907 49 H 0.037 0.963 50 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.438 0.665 29.944 30.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.104 4.104 3 H 0.084 0.916 4 C -0.010 4.010 5 C -0.552 4.552 6 H 0.074 0.926 7 C -0.146 4.146 8 N -0.536 5.536 9 Si 0.719 3.281 10 H -0.207 1.207 11 H -0.213 1.213 12 H -0.200 1.200 13 C -0.062 4.062 14 N -0.323 5.323 15 C -0.069 4.069 16 C -0.068 4.068 17 N -0.259 5.259 18 C -0.088 4.088 19 C 0.002 3.998 20 N -0.840 5.840 21 S 2.703 3.297 22 C -0.824 4.824 23 O -0.944 6.944 24 O -0.945 6.945 25 C 0.002 3.998 26 C -0.095 4.095 27 H 0.082 0.918 28 H 0.059 0.941 29 H 0.049 0.951 30 H 0.034 0.966 31 H 0.032 0.968 32 H 0.069 0.931 33 H 0.086 0.914 34 H 0.041 0.959 35 H 0.154 0.846 36 H 0.098 0.902 37 H 0.043 0.957 38 H 0.049 0.951 39 H 0.104 0.896 40 H 0.054 0.946 41 H 0.108 0.892 42 H 0.111 0.889 43 H 0.102 0.898 44 H 0.145 0.855 45 H 0.145 0.855 46 H 0.145 0.855 47 H 0.103 0.897 48 H 0.111 0.889 49 H 0.055 0.945 50 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -3.839 0.451 30.422 30.667 hybrid contribution -2.397 0.139 -1.206 2.686 sum -6.236 0.590 29.217 29.881 Atomic orbital electron populations 1.21740 0.96753 1.00375 1.00232 1.21232 0.94804 1.00134 0.94188 0.91618 1.19111 0.96173 0.95346 0.90345 1.21234 1.34684 1.08251 0.90991 0.92572 1.25028 0.95361 0.95099 0.99125 1.69963 1.39064 1.21196 1.23387 0.86622 0.78896 0.79798 0.82822 1.20717 1.21341 1.19952 1.22121 1.00449 0.94298 0.89295 1.60504 1.19352 1.50827 1.01575 1.21921 1.01532 0.94541 0.88877 1.22085 0.97507 0.98744 0.88508 1.61755 1.57992 1.03695 1.02449 1.22502 0.99026 0.96816 0.90490 1.21545 0.99849 0.80641 0.97808 1.57818 1.76014 1.22324 1.27848 1.04933 0.77307 0.74323 0.73098 1.30605 1.27852 1.12532 1.11424 1.93619 1.85331 1.29760 1.85685 1.93613 1.70840 1.71246 1.58800 1.21645 1.03076 0.91473 0.83635 1.22692 0.95640 0.91834 0.99331 0.91837 0.94077 0.95061 0.96624 0.96773 0.93091 0.91353 0.95880 0.84644 0.90214 0.95692 0.95087 0.89561 0.94560 0.89154 0.88923 0.89812 0.85457 0.85507 0.85470 0.89746 0.88890 0.94505 0.88929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.42 8.77 37.16 0.33 -2.09 16 2 C -0.08 -1.69 2.55 -90.61 -0.23 -1.92 16 3 H 0.07 1.38 8.14 -51.93 -0.42 0.95 16 4 C 0.03 0.70 4.45 -27.88 -0.12 0.58 16 5 C -0.51 -14.25 8.41 -34.44 -0.29 -14.54 16 6 H 0.06 1.52 7.06 -52.49 -0.37 1.15 16 7 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 8 N -0.90 -26.83 13.29 55.43 0.74 -26.10 16 9 Si 0.89 21.58 29.54 -169.99 -5.02 16.56 16 10 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 11 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 12 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 13 C 0.07 1.12 5.14 -3.83 -0.02 1.10 16 14 N -0.69 -9.46 6.50 -113.78 -0.74 -10.20 16 15 C 0.06 0.68 5.62 -3.82 -0.02 0.66 16 16 C 0.06 0.53 5.22 -3.82 -0.02 0.51 16 17 N -0.53 -4.19 4.63 -234.02 -1.08 -5.27 16 18 C 0.04 0.25 5.62 -3.70 -0.02 0.23 16 19 C 0.13 0.75 6.46 -3.60 -0.02 0.73 16 20 N -1.00 -6.40 3.25 -112.97 -0.37 -6.76 16 21 S 2.61 17.37 6.06 -107.50 -0.65 16.71 16 22 C -0.67 -2.19 10.99 101.05 1.11 -1.08 16 23 O -0.95 -9.56 16.78 -57.54 -0.97 -10.52 16 24 O -0.95 -9.31 16.79 -57.54 -0.97 -10.28 16 25 C 0.13 0.83 6.50 -3.37 -0.02 0.81 16 26 C 0.03 0.24 5.48 -3.47 -0.02 0.22 16 27 H 0.06 1.25 6.95 -51.93 -0.36 0.89 16 28 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.03 0.47 6.68 -51.93 -0.35 0.12 16 30 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.01 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 33 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 34 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 35 H 0.34 4.31 6.98 -39.29 -0.27 4.03 16 36 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.03 0.27 6.40 -51.93 -0.33 -0.06 16 38 H 0.03 0.27 8.12 -51.93 -0.42 -0.15 16 39 H 0.09 0.81 7.97 -51.93 -0.41 0.40 16 40 H 0.04 0.19 8.14 -51.93 -0.42 -0.23 16 41 H 0.09 0.49 7.99 -51.93 -0.41 0.08 16 42 H 0.09 0.43 7.19 -51.93 -0.37 0.06 16 43 H 0.08 0.54 8.14 -51.92 -0.42 0.12 16 44 H 0.13 0.28 8.14 -51.92 -0.42 -0.14 16 45 H 0.13 0.27 8.14 -51.92 -0.42 -0.15 16 46 H 0.13 0.30 8.14 -51.92 -0.42 -0.12 16 47 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 48 H 0.09 0.51 7.18 -51.93 -0.37 0.14 16 49 H 0.04 0.23 8.14 -51.93 -0.42 -0.20 16 50 H 0.09 0.67 6.16 -51.92 -0.32 0.35 16 LS Contribution 399.80 15.07 6.02 6.02 Total: -1.00 -34.61 399.80 -11.54 -46.15 By element: Atomic # 1 Polarization: 6.08 SS G_CDS: -9.06 Total: -2.98 kcal Atomic # 6 Polarization: -13.89 SS G_CDS: 0.55 Total: -13.34 kcal Atomic # 7 Polarization: -46.88 SS G_CDS: -1.45 Total: -48.33 kcal Atomic # 8 Polarization: -18.87 SS G_CDS: -1.93 Total: -20.80 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Atomic # 16 Polarization: 17.37 SS G_CDS: -0.65 Total: 16.71 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -34.61 -11.54 -46.15 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602551865.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.569 kcal (2) G-P(sol) polarization free energy of solvation -34.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds