Wall clock time and date at job start Tue Mar 31 2020 17:13:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.47275 * 2 1 4 4 C 1.53009 * 109.46816 * 240.00213 * 2 1 3 5 5 C 1.50703 * 109.46865 * 64.99894 * 4 2 1 6 6 H 1.07995 * 120.00422 * 0.02562 * 5 4 2 7 7 C 1.37878 * 119.99659 * 179.97438 * 5 4 2 8 8 N 1.31509 * 120.00180 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99742 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47388 * 90.00335 * 9 7 5 11 11 H 1.48501 * 109.47120 * 210.00522 * 9 7 5 12 12 H 1.48507 * 109.47311 * 330.00055 * 9 7 5 13 13 C 1.53001 * 109.47466 * 120.00379 * 2 1 3 14 14 N 1.46894 * 109.46988 * 294.99847 * 13 2 1 15 15 C 1.46900 * 110.99788 * 179.97438 * 14 13 2 16 16 C 1.53010 * 109.47011 * 179.97438 * 15 14 13 17 17 N 1.46900 * 109.47011 * 179.97438 * 16 15 14 18 18 C 1.46903 * 110.99653 * 170.00058 * 17 16 15 19 19 C 1.53241 * 109.33631 * 187.25275 * 18 17 16 20 20 N 1.47075 * 108.52094 * 306.17105 * 19 18 17 21 21 S 1.65599 * 120.87816 * 231.18527 * 20 19 18 22 22 C 1.81397 * 104.44825 * 90.00229 * 21 20 19 23 23 O 1.42105 * 104.27797 * 206.07341 * 21 20 19 24 24 O 1.42101 * 104.27901 * 333.93049 * 21 20 19 25 25 C 1.47077 * 118.23886 * 51.45978 * 20 19 18 26 26 C 1.46893 * 111.00047 * 294.29927 * 17 16 15 27 27 H 1.08996 * 109.47100 * 59.99455 * 1 2 3 28 28 H 1.09000 * 109.47275 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46431 * 299.99687 * 1 2 3 30 30 H 1.08997 * 109.46756 * 184.99779 * 4 2 1 31 31 H 1.08992 * 109.46898 * 304.99940 * 4 2 1 32 32 H 0.97004 * 120.00301 * 179.97438 * 8 7 5 33 33 H 1.09003 * 109.47254 * 174.99600 * 13 2 1 34 34 H 1.08999 * 109.46702 * 54.99716 * 13 2 1 35 35 H 1.00898 * 111.00117 * 56.04719 * 14 13 2 36 36 H 1.08993 * 109.47166 * 60.00560 * 15 14 13 37 37 H 1.08994 * 109.47264 * 299.99859 * 15 14 13 38 38 H 1.08995 * 109.46964 * 59.99840 * 16 15 14 39 39 H 1.09007 * 109.46742 * 300.00102 * 16 15 14 40 40 H 1.08998 * 109.49149 * 67.29677 * 18 17 16 41 41 H 1.08998 * 109.49119 * 307.20997 * 18 17 16 42 42 H 1.09000 * 109.62511 * 186.45793 * 19 18 17 43 43 H 1.09009 * 109.62732 * 65.88429 * 19 18 17 44 44 H 1.09003 * 109.47352 * 180.02562 * 22 21 20 45 45 H 1.09004 * 109.47032 * 299.99803 * 22 21 20 46 46 H 1.09000 * 109.47124 * 60.00075 * 22 21 20 47 47 H 1.08999 * 109.62966 * 68.25482 * 25 20 19 48 48 H 1.09003 * 109.62478 * 188.82972 * 25 20 19 49 49 H 1.08998 * 109.49955 * 292.71056 * 26 17 16 50 50 H 1.09008 * 109.49312 * 52.79138 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2494 5 6 1.6412 0.0571 -2.4766 6 1 1.0806 0.9746 -2.3757 7 6 1.9930 -0.4016 -3.7284 8 7 2.6761 -1.5186 -3.8513 9 14 1.4994 0.5636 -5.2496 10 1 2.5649 1.5432 -5.5818 11 1 1.3125 -0.3700 -6.3892 12 1 0.2281 1.2850 -4.9872 13 6 2.0401 -0.7213 1.2492 14 7 1.6515 0.0373 2.4456 15 6 2.1250 -0.6274 3.6671 16 6 1.7027 0.1907 4.8892 17 7 2.1756 -0.4742 6.1107 18 6 1.9996 0.3925 7.2837 19 6 2.6660 -0.2587 8.5003 20 7 2.1356 -1.6223 8.6494 21 16 1.5359 -2.1470 10.1011 22 6 -0.2258 -1.7185 10.0445 23 8 1.7076 -3.5571 10.0623 24 8 2.2114 -1.3530 11.0669 25 6 2.1576 -2.5097 7.4767 26 6 1.5058 -1.7680 6.2989 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3632 0.5138 0.8901 30 1 3.1262 -0.7994 -1.2057 31 1 1.6053 -1.7197 -1.2952 32 1 2.9234 -1.8415 -4.7320 33 1 3.1264 -0.7996 1.2054 34 1 1.6054 -1.7198 1.2950 35 1 0.6530 0.1791 2.4753 36 1 3.2118 -0.7052 3.6404 37 1 1.6906 -1.6251 3.7295 38 1 0.6159 0.2691 4.9161 39 1 2.1375 1.1883 4.8265 40 1 0.9360 0.5270 7.4802 41 1 2.4601 1.3617 7.0921 42 1 2.4412 0.3216 9.3952 43 1 3.7447 -0.2998 8.3487 44 1 -0.7058 -2.0310 10.9719 45 1 -0.3339 -0.6404 9.9253 46 1 -0.6963 -2.2262 9.2025 47 1 3.1883 -2.7632 7.2286 48 1 1.5964 -3.4184 7.6946 49 1 0.4490 -1.6034 6.5091 50 1 1.6081 -2.3657 5.3930 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602551865.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:13:57 Heat of formation + Delta-G solvation = -96.093700 kcal Electronic energy + Delta-G solvation = -26759.563340 eV Core-core repulsion = 22947.531195 eV Total energy + Delta-G solvation = -3812.032145 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.08343 -38.44795 -38.26055 -37.05800 -36.39290 -35.08552 -33.70821 -32.11790 -30.32132 -30.10366 -28.67302 -27.16291 -25.90167 -24.81839 -23.98057 -22.50272 -21.57884 -20.58548 -19.78456 -18.76282 -18.50691 -17.36531 -17.27646 -16.99178 -16.67788 -16.35948 -16.03108 -15.76150 -15.58969 -15.33496 -15.24964 -14.85740 -14.56689 -14.18857 -14.06018 -14.00643 -13.78356 -13.73599 -13.40696 -13.30893 -13.23460 -13.21280 -12.89222 -12.77437 -12.74896 -12.55075 -12.32215 -12.23993 -12.17468 -12.08676 -11.91461 -11.82507 -11.60424 -11.43352 -11.05339 -10.90169 -10.52314 -10.10320 -9.33917 -9.19289 -8.16273 -6.25352 -0.73770 1.41266 1.42294 1.53030 1.60597 2.42895 2.72784 2.93122 3.12036 3.17142 3.49118 3.61532 3.98963 4.02800 4.04291 4.08982 4.19580 4.24692 4.25836 4.34451 4.35125 4.44280 4.48256 4.52113 4.59638 4.76550 4.78459 4.83451 4.87723 4.90547 4.98071 5.01852 5.04491 5.09080 5.10541 5.17848 5.26501 5.40589 5.50810 5.54242 5.57132 5.81916 5.90900 6.03737 6.12775 6.16812 6.32686 6.55301 6.90962 7.42859 8.95695 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.037813 B = 0.001624 C = 0.001609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.316416 B =17237.152966 C =17392.762712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.076 4.076 3 H 0.057 0.943 4 C 0.032 3.968 5 C -0.528 4.528 6 H 0.062 0.938 7 C -0.005 4.005 8 N -0.935 5.935 9 Si 0.962 3.038 10 H -0.275 1.275 11 H -0.284 1.284 12 H -0.262 1.262 13 C 0.080 3.920 14 N -0.689 5.689 15 C 0.064 3.936 16 C 0.071 3.929 17 N -0.548 5.548 18 C 0.043 3.957 19 C 0.125 3.875 20 N -1.004 6.004 21 S 2.614 3.386 22 C -0.652 4.652 23 O -0.995 6.995 24 O -0.992 6.992 25 C 0.127 3.873 26 C 0.036 3.964 27 H 0.044 0.956 28 H 0.040 0.960 29 H 0.068 0.932 30 H -0.015 1.015 31 H -0.010 1.010 32 H 0.261 0.739 33 H 0.054 0.946 34 H 0.023 0.977 35 H 0.344 0.656 36 H 0.065 0.935 37 H 0.031 0.969 38 H 0.041 0.959 39 H 0.082 0.918 40 H 0.052 0.948 41 H 0.096 0.904 42 H 0.106 0.894 43 H 0.071 0.929 44 H 0.143 0.857 45 H 0.147 0.853 46 H 0.144 0.856 47 H 0.071 0.929 48 H 0.102 0.898 49 H 0.052 0.948 50 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.810 2.169 30.864 31.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.095 4.095 3 H 0.075 0.925 4 C -0.006 4.006 5 C -0.566 4.566 6 H 0.080 0.920 7 C -0.202 4.202 8 N -0.576 5.576 9 Si 0.787 3.213 10 H -0.200 1.200 11 H -0.210 1.210 12 H -0.186 1.186 13 C -0.049 4.049 14 N -0.322 5.322 15 C -0.065 4.065 16 C -0.057 4.057 17 N -0.273 5.273 18 C -0.086 4.086 19 C 0.000 4.000 20 N -0.841 5.841 21 S 2.712 3.288 22 C -0.806 4.806 23 O -0.986 6.986 24 O -0.983 6.983 25 C 0.001 3.999 26 C -0.093 4.093 27 H 0.063 0.937 28 H 0.059 0.941 29 H 0.087 0.913 30 H 0.004 0.996 31 H 0.008 0.992 32 H 0.070 0.930 33 H 0.073 0.927 34 H 0.041 0.959 35 H 0.164 0.836 36 H 0.083 0.917 37 H 0.049 0.951 38 H 0.059 0.941 39 H 0.101 0.899 40 H 0.070 0.930 41 H 0.114 0.886 42 H 0.124 0.876 43 H 0.090 0.910 44 H 0.162 0.838 45 H 0.165 0.835 46 H 0.162 0.838 47 H 0.089 0.911 48 H 0.120 0.880 49 H 0.070 0.930 50 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -6.178 1.959 31.370 32.032 hybrid contribution -1.663 -0.345 -1.436 2.224 sum -7.841 1.614 29.934 30.986 Atomic orbital electron populations 1.21645 0.94849 1.00658 1.01167 1.21026 0.96316 0.98993 0.93179 0.92491 1.19013 0.94174 0.94608 0.92787 1.21652 1.34402 1.08533 0.92048 0.91994 1.25973 0.95341 0.96126 1.02724 1.70102 1.40339 1.22949 1.24243 0.85495 0.79015 0.78331 0.78487 1.20036 1.21011 1.18625 1.21790 0.99463 0.94169 0.89471 1.60392 1.20044 1.50489 1.01267 1.21910 1.00639 0.95242 0.88736 1.21886 0.97943 0.97970 0.87885 1.61702 1.58578 1.04318 1.02728 1.22541 0.99999 0.96605 0.89468 1.21595 0.99275 0.80604 0.98518 1.57694 1.76691 1.22391 1.27369 1.04570 0.78842 0.72986 0.72392 1.30387 1.22947 1.14109 1.13136 1.93563 1.86753 1.32163 1.86095 1.93560 1.73077 1.71546 1.60123 1.21627 1.02540 0.91933 0.83759 1.22685 0.96343 0.91276 0.99005 0.93685 0.94104 0.91276 0.99647 0.99193 0.92989 0.92748 0.95887 0.83634 0.91687 0.95051 0.94075 0.89912 0.93015 0.88565 0.87601 0.91030 0.83849 0.83492 0.83788 0.91097 0.88006 0.93029 0.89522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.37 8.77 71.98 0.63 -3.74 16 2 C -0.08 -3.04 2.55 -10.79 -0.03 -3.07 16 3 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 4 C 0.03 1.66 4.45 29.85 0.13 1.79 16 5 C -0.53 -29.71 8.41 25.60 0.22 -29.50 16 6 H 0.06 3.34 7.06 -2.91 -0.02 3.32 16 7 C 0.00 -0.26 5.46 84.66 0.46 0.20 16 8 N -0.94 -57.21 13.29 21.45 0.28 -56.93 16 9 Si 0.96 44.32 29.54 68.60 2.03 46.35 16 10 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 11 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 12 H -0.26 -11.45 7.11 99.48 0.71 -10.75 16 13 C 0.08 2.67 5.14 86.30 0.44 3.12 16 14 N -0.69 -17.75 6.50 -513.90 -3.34 -21.09 16 15 C 0.06 1.34 5.62 86.31 0.48 1.83 16 16 C 0.07 1.11 5.22 86.31 0.45 1.56 16 17 N -0.55 -7.60 4.63 -894.30 -4.14 -11.74 16 18 C 0.04 0.42 5.62 86.38 0.49 0.91 16 19 C 0.13 1.33 6.46 86.35 0.56 1.89 16 20 N -1.00 -11.71 3.25 -511.34 -1.66 -13.37 16 21 S 2.61 32.19 6.06 -56.49 -0.34 31.84 16 22 C -0.65 -1.99 10.99 113.37 1.25 -0.75 16 23 O -1.00 -19.87 16.78 -127.65 -2.14 -22.01 16 24 O -0.99 -19.01 16.79 -127.65 -2.14 -21.15 16 25 C 0.13 1.55 6.50 86.50 0.56 2.12 16 26 C 0.04 0.43 5.48 86.54 0.47 0.91 16 27 H 0.04 1.72 6.95 -2.39 -0.02 1.70 16 28 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.07 1.87 6.68 -2.39 -0.02 1.85 16 30 H -0.01 -0.85 8.14 -2.39 -0.02 -0.87 16 31 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 32 H 0.26 15.06 8.31 -92.71 -0.77 14.29 16 33 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 34 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 35 H 0.34 7.86 6.98 -89.70 -0.63 7.23 16 36 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 37 H 0.03 0.63 6.40 -2.39 -0.02 0.62 16 38 H 0.04 0.57 8.12 -2.39 -0.02 0.56 16 39 H 0.08 1.37 7.97 -2.38 -0.02 1.35 16 40 H 0.05 0.37 8.14 -2.39 -0.02 0.35 16 41 H 0.10 0.84 7.99 -2.39 -0.02 0.82 16 42 H 0.11 0.83 7.19 -2.39 -0.02 0.82 16 43 H 0.07 0.92 8.14 -2.38 -0.02 0.90 16 44 H 0.14 0.12 8.14 -2.39 -0.02 0.10 16 45 H 0.15 -0.02 8.14 -2.39 -0.02 -0.04 16 46 H 0.14 0.09 8.14 -2.39 -0.02 0.07 16 47 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 48 H 0.10 1.05 7.18 -2.39 -0.02 1.03 16 49 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 50 H 0.09 1.13 6.16 -2.38 -0.01 1.11 16 Total: -1.00 -76.28 399.80 -5.06 -81.34 By element: Atomic # 1 Polarization: 9.21 SS G_CDS: 0.28 Total: 9.49 kcal Atomic # 6 Polarization: -28.85 SS G_CDS: 6.12 Total: -22.73 kcal Atomic # 7 Polarization: -94.26 SS G_CDS: -8.86 Total: -103.12 kcal Atomic # 8 Polarization: -38.88 SS G_CDS: -4.29 Total: -43.16 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.35 kcal Atomic # 16 Polarization: 32.19 SS G_CDS: -0.34 Total: 31.84 kcal Total: -76.28 -5.06 -81.34 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602551865.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.754 kcal (2) G-P(sol) polarization free energy of solvation -76.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds