Wall clock time and date at job start Tue Mar 31 2020 17:14:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.47084 * 2 1 4 4 C 1.53002 * 109.46781 * 119.99784 * 2 1 3 5 5 C 1.50701 * 109.47295 * 295.00013 * 4 2 1 6 6 H 1.08008 * 119.99746 * 359.97438 * 5 4 2 7 7 C 1.37871 * 120.00551 * 180.02562 * 5 4 2 8 8 N 1.31515 * 119.99844 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 120.00279 * 179.97438 * 7 5 4 10 10 H 1.48493 * 109.47204 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.47073 * 119.99611 * 9 7 5 12 12 H 1.48497 * 109.46983 * 239.99593 * 9 7 5 13 13 C 1.53001 * 109.47256 * 239.99447 * 2 1 3 14 14 N 1.46894 * 109.46988 * 65.00330 * 13 2 1 15 15 C 1.46900 * 110.99788 * 179.97438 * 14 13 2 16 16 C 1.53010 * 109.47011 * 179.97438 * 15 14 13 17 17 N 1.46900 * 109.47011 * 179.97438 * 16 15 14 18 18 C 1.46903 * 110.99653 * 170.00058 * 17 16 15 19 19 C 1.53241 * 109.33631 * 187.25275 * 18 17 16 20 20 N 1.47075 * 108.52094 * 306.17105 * 19 18 17 21 21 S 1.65599 * 120.87816 * 231.18527 * 20 19 18 22 22 C 1.81397 * 104.44825 * 90.00229 * 21 20 19 23 23 O 1.42105 * 104.27797 * 206.07341 * 21 20 19 24 24 O 1.42101 * 104.27901 * 333.93049 * 21 20 19 25 25 C 1.47077 * 118.23886 * 51.45978 * 20 19 18 26 26 C 1.46893 * 111.00047 * 294.29927 * 17 16 15 27 27 H 1.08996 * 109.46718 * 300.00549 * 1 2 3 28 28 H 1.08996 * 109.46707 * 60.00703 * 1 2 3 29 29 H 1.09000 * 109.47084 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47480 * 54.99889 * 4 2 1 31 31 H 1.08995 * 109.47386 * 175.00324 * 4 2 1 32 32 H 0.97001 * 119.99871 * 180.02562 * 8 7 5 33 33 H 1.09003 * 109.47254 * 305.00083 * 13 2 1 34 34 H 1.08999 * 109.46702 * 185.00199 * 13 2 1 35 35 H 1.00898 * 111.00117 * 56.04719 * 14 13 2 36 36 H 1.08993 * 109.47166 * 60.00560 * 15 14 13 37 37 H 1.08994 * 109.47264 * 299.99859 * 15 14 13 38 38 H 1.08995 * 109.46964 * 59.99840 * 16 15 14 39 39 H 1.09007 * 109.46742 * 300.00102 * 16 15 14 40 40 H 1.08998 * 109.49149 * 67.29677 * 18 17 16 41 41 H 1.08998 * 109.49119 * 307.20997 * 18 17 16 42 42 H 1.09000 * 109.62511 * 186.45793 * 19 18 17 43 43 H 1.09009 * 109.62732 * 65.88429 * 19 18 17 44 44 H 1.09003 * 109.47352 * 180.02562 * 22 21 20 45 45 H 1.09004 * 109.47032 * 299.99803 * 22 21 20 46 46 H 1.09000 * 109.47124 * 60.00075 * 22 21 20 47 47 H 1.08999 * 109.62966 * 68.25482 * 25 20 19 48 48 H 1.09003 * 109.62478 * 188.82972 * 25 20 19 49 49 H 1.08998 * 109.49955 * 292.71056 * 26 17 16 50 50 H 1.09008 * 109.49312 * 52.79138 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6413 0.0571 2.4766 6 1 1.0806 0.9747 2.3756 7 6 1.9931 -0.4015 3.7283 8 7 2.6762 -1.5186 3.8513 9 14 1.4994 0.5637 5.2496 10 1 0.7430 1.7752 4.8433 11 1 0.6455 -0.2851 6.1189 12 1 2.7177 0.9684 5.9959 13 6 2.0401 -0.7214 -1.2492 14 7 1.6515 0.0372 -2.4456 15 6 2.1260 -0.6268 -3.6670 16 6 1.7026 0.1906 -4.8892 17 7 2.1776 -0.4732 -6.1106 18 6 1.5936 0.1467 -7.3076 19 6 1.9670 -0.6818 -8.5415 20 7 3.4288 -0.8399 -8.5732 21 16 4.2933 -0.4786 -9.9387 22 6 4.7207 1.2745 -9.7531 23 8 5.4569 -1.2886 -9.8414 24 8 3.3640 -0.6558 -10.9990 25 6 4.1019 -1.3333 -7.3621 26 6 3.6452 -0.4735 -6.1728 27 1 -0.3632 0.5139 0.8899 28 1 -0.3632 0.5137 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.6053 -1.7198 1.2953 31 1 3.1262 -0.7994 1.2058 32 1 2.9234 -1.8414 4.7320 33 1 1.6055 -1.7200 -1.2950 34 1 3.1264 -0.7996 -1.2054 35 1 1.9883 0.9871 -2.3967 36 1 1.6923 -1.6248 -3.7299 37 1 3.2128 -0.7040 -3.6398 38 1 2.1359 1.1887 -4.8266 39 1 0.6156 0.2673 -4.9161 40 1 1.9812 1.1594 -7.4186 41 1 0.5088 0.1809 -7.2071 42 1 1.6347 -0.1666 -9.4427 43 1 1.4938 -1.6620 -8.4812 44 1 5.2975 1.6015 -10.6183 45 1 3.8076 1.8654 -9.6813 46 1 5.3134 1.4102 -8.8485 47 1 3.8301 -2.3749 -7.1907 48 1 5.1819 -1.2490 -7.4834 49 1 4.0042 0.5478 -6.2996 50 1 4.0483 -0.8892 -5.2493 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602551866.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:14:01 Heat of formation + Delta-G solvation = -69.107304 kcal Electronic energy + Delta-G solvation = -26742.353337 eV Core-core repulsion = 22931.491410 eV Total energy + Delta-G solvation = -3810.861927 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -39.51470 -37.63354 -37.09317 -36.41985 -35.40308 -33.68945 -31.99221 -31.59812 -30.01630 -29.10686 -26.87043 -26.05770 -24.50181 -24.24451 -22.36736 -21.69889 -21.02499 -19.26589 -19.03849 -18.22210 -16.84490 -16.66182 -16.35927 -16.06139 -15.68872 -15.17535 -15.09890 -15.07252 -14.66882 -14.48115 -14.00399 -13.91647 -13.73171 -13.67915 -13.46224 -12.99680 -12.82693 -12.57129 -12.42319 -12.32637 -12.28656 -12.05631 -11.75584 -11.64709 -11.59259 -11.46473 -11.35074 -11.17850 -11.05307 -10.85344 -10.70903 -10.29902 -10.22214 -9.71202 -9.60560 -9.16022 -8.95252 -8.68257 -8.34039 -8.15601 -5.98519 -3.99622 -0.26084 2.08825 3.31161 3.35769 3.38790 3.39761 3.42847 3.59970 4.01798 4.27950 4.34354 4.42781 4.48919 4.61392 4.71439 4.72325 4.81252 4.88698 5.02977 5.10169 5.10530 5.22728 5.26257 5.37368 5.45595 5.48073 5.57809 5.62095 5.68598 5.75400 5.90489 5.96713 6.02523 6.14225 6.40385 6.53289 6.66609 6.66859 6.69171 7.00227 7.16892 7.18779 7.33193 7.60154 7.69075 7.84568 8.01831 8.45739 9.07040 9.63846 11.13022 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.034240 B = 0.001640 C = 0.001609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.559894 B =17071.609385 C =17394.418410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.083 4.083 3 H 0.052 0.948 4 C 0.027 3.973 5 C -0.512 4.512 6 H 0.057 0.943 7 C 0.054 3.946 8 N -0.897 5.897 9 Si 0.890 3.110 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.285 1.285 13 C 0.066 3.934 14 N -0.688 5.688 15 C 0.061 3.939 16 C 0.060 3.940 17 N -0.534 5.534 18 C 0.041 3.959 19 C 0.127 3.873 20 N -1.002 6.002 21 S 2.611 3.389 22 C -0.675 4.675 23 O -0.954 6.954 24 O -0.955 6.955 25 C 0.127 3.873 26 C 0.035 3.965 27 H 0.053 0.947 28 H 0.041 0.959 29 H 0.040 0.960 30 H 0.017 0.983 31 H 0.012 0.988 32 H 0.259 0.741 33 H 0.067 0.933 34 H 0.024 0.976 35 H 0.334 0.666 36 H 0.079 0.921 37 H 0.025 0.975 38 H 0.031 0.969 39 H 0.086 0.914 40 H 0.036 0.964 41 H 0.090 0.910 42 H 0.093 0.907 43 H 0.083 0.917 44 H 0.127 0.873 45 H 0.126 0.874 46 H 0.127 0.873 47 H 0.084 0.916 48 H 0.093 0.907 49 H 0.037 0.963 50 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.186 5.321 -29.610 30.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.102 4.102 3 H 0.071 0.929 4 C -0.011 4.011 5 C -0.550 4.550 6 H 0.075 0.925 7 C -0.147 4.147 8 N -0.536 5.536 9 Si 0.718 3.282 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.212 1.212 13 C -0.062 4.062 14 N -0.319 5.319 15 C -0.068 4.068 16 C -0.068 4.068 17 N -0.259 5.259 18 C -0.088 4.088 19 C 0.002 3.998 20 N -0.840 5.840 21 S 2.703 3.297 22 C -0.824 4.824 23 O -0.944 6.944 24 O -0.945 6.945 25 C 0.002 3.998 26 C -0.095 4.095 27 H 0.072 0.928 28 H 0.060 0.940 29 H 0.059 0.941 30 H 0.035 0.965 31 H 0.030 0.970 32 H 0.068 0.932 33 H 0.086 0.914 34 H 0.042 0.958 35 H 0.152 0.848 36 H 0.097 0.903 37 H 0.043 0.957 38 H 0.049 0.951 39 H 0.104 0.896 40 H 0.054 0.946 41 H 0.108 0.892 42 H 0.111 0.889 43 H 0.102 0.898 44 H 0.145 0.855 45 H 0.145 0.855 46 H 0.145 0.855 47 H 0.102 0.898 48 H 0.111 0.889 49 H 0.055 0.945 50 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 1.690 3.841 -30.213 30.503 hybrid contribution 1.075 2.200 1.423 2.832 sum 2.764 6.042 -28.791 29.547 Atomic orbital electron populations 1.21586 0.95689 1.00608 1.00110 1.21206 0.96044 0.98848 0.94061 0.92922 1.19128 0.95892 0.95624 0.90449 1.21276 1.34505 1.08274 0.90983 0.92517 1.25032 0.95365 0.95123 0.99136 1.69976 1.39151 1.21246 1.23267 0.86568 0.78221 0.80122 0.83277 1.19769 1.21068 1.21152 1.22136 0.97119 0.97743 0.89221 1.60462 1.64095 1.05680 1.01634 1.21917 0.97048 0.98911 0.88956 1.22082 1.01296 0.94911 0.88530 1.61756 1.07073 1.55150 1.01932 1.22500 1.00597 0.95569 0.90162 1.21543 0.78710 1.01821 0.97767 1.57818 1.16202 1.80241 1.29744 1.04933 0.74029 0.77429 0.73271 1.30605 1.12356 1.27782 1.11667 1.93620 1.50443 1.64584 1.85745 1.93612 1.62325 1.85385 1.53185 1.21645 0.96585 0.99141 0.82459 1.22692 0.88481 0.98831 0.99493 0.92791 0.93971 0.94128 0.96511 0.96959 0.93152 0.91438 0.95818 0.84850 0.90273 0.95679 0.95053 0.89596 0.94557 0.89171 0.88929 0.89827 0.85454 0.85509 0.85462 0.89758 0.88885 0.94493 0.88917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.34 8.89 37.16 0.33 -2.01 16 2 C -0.08 -1.65 2.48 -90.62 -0.22 -1.87 16 3 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 4 C 0.03 0.67 4.45 -27.88 -0.12 0.55 16 5 C -0.51 -14.25 8.41 -34.44 -0.29 -14.54 16 6 H 0.06 1.54 7.06 -52.48 -0.37 1.17 16 7 C 0.05 1.54 5.46 -17.82 -0.10 1.45 16 8 N -0.90 -26.87 13.29 55.43 0.74 -26.14 16 9 Si 0.89 21.59 29.54 -169.99 -5.02 16.57 16 10 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 11 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 12 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 13 C 0.07 1.10 5.07 -3.83 -0.02 1.08 16 14 N -0.69 -9.21 5.96 -113.78 -0.68 -9.89 16 15 C 0.06 0.67 5.62 -3.82 -0.02 0.65 16 16 C 0.06 0.52 5.22 -3.82 -0.02 0.50 16 17 N -0.53 -4.15 4.63 -234.02 -1.08 -5.23 16 18 C 0.04 0.25 5.62 -3.70 -0.02 0.23 16 19 C 0.13 0.75 6.46 -3.60 -0.02 0.72 16 20 N -1.00 -6.39 3.25 -112.97 -0.37 -6.76 16 21 S 2.61 17.41 6.06 -107.50 -0.65 16.76 16 22 C -0.67 -2.22 10.99 101.05 1.11 -1.11 16 23 O -0.95 -9.58 16.78 -57.54 -0.97 -10.55 16 24 O -0.95 -9.31 16.79 -57.54 -0.97 -10.28 16 25 C 0.13 0.83 6.50 -3.37 -0.02 0.81 16 26 C 0.03 0.24 5.48 -3.47 -0.02 0.22 16 27 H 0.05 1.10 6.95 -51.93 -0.36 0.74 16 28 H 0.04 0.71 7.75 -51.93 -0.40 0.31 16 29 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.01 0.33 8.14 -51.93 -0.42 -0.10 16 32 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 33 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 34 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.33 4.21 8.73 -39.29 -0.34 3.87 16 36 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 37 H 0.03 0.27 6.40 -51.93 -0.33 -0.06 16 38 H 0.03 0.27 8.12 -51.93 -0.42 -0.15 16 39 H 0.09 0.79 7.97 -51.93 -0.41 0.38 16 40 H 0.04 0.19 8.14 -51.93 -0.42 -0.23 16 41 H 0.09 0.48 7.99 -51.93 -0.41 0.07 16 42 H 0.09 0.43 7.19 -51.93 -0.37 0.06 16 43 H 0.08 0.54 8.14 -51.92 -0.42 0.11 16 44 H 0.13 0.29 8.14 -51.92 -0.42 -0.13 16 45 H 0.13 0.27 8.14 -51.92 -0.42 -0.15 16 46 H 0.13 0.31 8.14 -51.92 -0.42 -0.11 16 47 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 48 H 0.09 0.52 7.18 -51.93 -0.37 0.15 16 49 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 50 H 0.09 0.67 6.16 -51.92 -0.32 0.35 16 LS Contribution 402.06 15.07 6.06 6.06 Total: -1.00 -34.69 402.06 -11.56 -46.25 By element: Atomic # 1 Polarization: 5.69 SS G_CDS: -9.18 Total: -3.49 kcal Atomic # 6 Polarization: -13.87 SS G_CDS: 0.56 Total: -13.31 kcal Atomic # 7 Polarization: -46.62 SS G_CDS: -1.39 Total: -48.01 kcal Atomic # 8 Polarization: -18.90 SS G_CDS: -1.93 Total: -20.83 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Atomic # 16 Polarization: 17.41 SS G_CDS: -0.65 Total: 16.76 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -34.69 -11.56 -46.25 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602551866.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.856 kcal (2) G-P(sol) polarization free energy of solvation -34.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds