Wall clock time and date at job start Tue Mar 31 2020 17:14:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.47084 * 2 1 4 4 C 1.53002 * 109.46781 * 119.99784 * 2 1 3 5 5 C 1.50701 * 109.47295 * 295.00013 * 4 2 1 6 6 H 1.08008 * 119.99746 * 359.97438 * 5 4 2 7 7 C 1.37871 * 120.00551 * 180.02562 * 5 4 2 8 8 N 1.31515 * 119.99844 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 120.00279 * 179.97438 * 7 5 4 10 10 H 1.48493 * 109.47204 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.47073 * 119.99611 * 9 7 5 12 12 H 1.48497 * 109.46983 * 239.99593 * 9 7 5 13 13 C 1.53001 * 109.47256 * 239.99447 * 2 1 3 14 14 N 1.46894 * 109.46988 * 65.00330 * 13 2 1 15 15 C 1.46900 * 110.99788 * 179.97438 * 14 13 2 16 16 C 1.53010 * 109.47011 * 179.97438 * 15 14 13 17 17 N 1.46900 * 109.47011 * 179.97438 * 16 15 14 18 18 C 1.46903 * 110.99653 * 170.00058 * 17 16 15 19 19 C 1.53241 * 109.33631 * 187.25275 * 18 17 16 20 20 N 1.47075 * 108.52094 * 306.17105 * 19 18 17 21 21 S 1.65599 * 120.87816 * 231.18527 * 20 19 18 22 22 C 1.81397 * 104.44825 * 90.00229 * 21 20 19 23 23 O 1.42105 * 104.27797 * 206.07341 * 21 20 19 24 24 O 1.42101 * 104.27901 * 333.93049 * 21 20 19 25 25 C 1.47077 * 118.23886 * 51.45978 * 20 19 18 26 26 C 1.46893 * 111.00047 * 294.29927 * 17 16 15 27 27 H 1.08996 * 109.46718 * 300.00549 * 1 2 3 28 28 H 1.08996 * 109.46707 * 60.00703 * 1 2 3 29 29 H 1.09000 * 109.47084 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47480 * 54.99889 * 4 2 1 31 31 H 1.08995 * 109.47386 * 175.00324 * 4 2 1 32 32 H 0.97001 * 119.99871 * 180.02562 * 8 7 5 33 33 H 1.09003 * 109.47254 * 305.00083 * 13 2 1 34 34 H 1.08999 * 109.46702 * 185.00199 * 13 2 1 35 35 H 1.00898 * 111.00117 * 56.04719 * 14 13 2 36 36 H 1.08993 * 109.47166 * 60.00560 * 15 14 13 37 37 H 1.08994 * 109.47264 * 299.99859 * 15 14 13 38 38 H 1.08995 * 109.46964 * 59.99840 * 16 15 14 39 39 H 1.09007 * 109.46742 * 300.00102 * 16 15 14 40 40 H 1.08998 * 109.49149 * 67.29677 * 18 17 16 41 41 H 1.08998 * 109.49119 * 307.20997 * 18 17 16 42 42 H 1.09000 * 109.62511 * 186.45793 * 19 18 17 43 43 H 1.09009 * 109.62732 * 65.88429 * 19 18 17 44 44 H 1.09003 * 109.47352 * 180.02562 * 22 21 20 45 45 H 1.09004 * 109.47032 * 299.99803 * 22 21 20 46 46 H 1.09000 * 109.47124 * 60.00075 * 22 21 20 47 47 H 1.08999 * 109.62966 * 68.25482 * 25 20 19 48 48 H 1.09003 * 109.62478 * 188.82972 * 25 20 19 49 49 H 1.08998 * 109.49955 * 292.71056 * 26 17 16 50 50 H 1.09008 * 109.49312 * 52.79138 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6413 0.0571 2.4766 6 1 1.0806 0.9747 2.3756 7 6 1.9931 -0.4015 3.7283 8 7 2.6762 -1.5186 3.8513 9 14 1.4994 0.5637 5.2496 10 1 0.7430 1.7752 4.8433 11 1 0.6455 -0.2851 6.1189 12 1 2.7177 0.9684 5.9959 13 6 2.0401 -0.7214 -1.2492 14 7 1.6515 0.0372 -2.4456 15 6 2.1260 -0.6268 -3.6670 16 6 1.7026 0.1906 -4.8892 17 7 2.1776 -0.4732 -6.1106 18 6 1.5936 0.1467 -7.3076 19 6 1.9670 -0.6818 -8.5415 20 7 3.4288 -0.8399 -8.5732 21 16 4.2933 -0.4786 -9.9387 22 6 4.7207 1.2745 -9.7531 23 8 5.4569 -1.2886 -9.8414 24 8 3.3640 -0.6558 -10.9990 25 6 4.1019 -1.3333 -7.3621 26 6 3.6452 -0.4735 -6.1728 27 1 -0.3632 0.5139 0.8899 28 1 -0.3632 0.5137 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.6053 -1.7198 1.2953 31 1 3.1262 -0.7994 1.2058 32 1 2.9234 -1.8414 4.7320 33 1 1.6055 -1.7200 -1.2950 34 1 3.1264 -0.7996 -1.2054 35 1 1.9883 0.9871 -2.3967 36 1 1.6923 -1.6248 -3.7299 37 1 3.2128 -0.7040 -3.6398 38 1 2.1359 1.1887 -4.8266 39 1 0.6156 0.2673 -4.9161 40 1 1.9812 1.1594 -7.4186 41 1 0.5088 0.1809 -7.2071 42 1 1.6347 -0.1666 -9.4427 43 1 1.4938 -1.6620 -8.4812 44 1 5.2975 1.6015 -10.6183 45 1 3.8076 1.8654 -9.6813 46 1 5.3134 1.4102 -8.8485 47 1 3.8301 -2.3749 -7.1907 48 1 5.1819 -1.2490 -7.4834 49 1 4.0042 0.5478 -6.2996 50 1 4.0483 -0.8892 -5.2493 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602551866.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:14:00 Heat of formation + Delta-G solvation = -96.308457 kcal Electronic energy + Delta-G solvation = -26743.532868 eV Core-core repulsion = 22931.491410 eV Total energy + Delta-G solvation = -3812.041458 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.07739 -38.36785 -38.26228 -37.05989 -36.40072 -35.08175 -33.73107 -32.11861 -30.32393 -30.10011 -28.66893 -27.07826 -25.81180 -24.81857 -23.99011 -22.53612 -21.59350 -20.66146 -19.78570 -18.76261 -18.46782 -17.36107 -17.24027 -16.89605 -16.62148 -16.34503 -15.97385 -15.82824 -15.59219 -15.41806 -15.23335 -14.90273 -14.53531 -14.18745 -14.06003 -14.00788 -13.90075 -13.62048 -13.33163 -13.24041 -13.22583 -13.14734 -12.88523 -12.78681 -12.70065 -12.59779 -12.24167 -12.21581 -12.19792 -12.09671 -12.02305 -11.77301 -11.59441 -11.42200 -11.06999 -10.87514 -10.53235 -10.10385 -9.32070 -9.18767 -8.16758 -6.25745 -0.73974 1.40574 1.41248 1.54125 1.60451 2.42595 2.73160 2.92818 3.11855 3.16763 3.49419 3.61566 3.99041 4.03027 4.04104 4.08382 4.18217 4.22724 4.29792 4.34642 4.37391 4.46047 4.50570 4.56022 4.60627 4.77322 4.83567 4.89246 4.90810 4.92574 4.98219 5.01525 5.06012 5.09938 5.11791 5.18046 5.31380 5.48879 5.53505 5.54226 5.57839 5.83212 5.90519 6.02910 6.12809 6.16407 6.32619 6.54789 6.90899 7.42604 8.95456 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.034240 B = 0.001640 C = 0.001609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.559894 B =17071.609385 C =17394.418410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.074 4.074 3 H 0.055 0.945 4 C 0.031 3.969 5 C -0.527 4.527 6 H 0.062 0.938 7 C -0.005 4.005 8 N -0.936 5.936 9 Si 0.962 3.038 10 H -0.261 1.261 11 H -0.281 1.281 12 H -0.280 1.280 13 C 0.080 3.920 14 N -0.684 5.684 15 C 0.065 3.935 16 C 0.072 3.928 17 N -0.547 5.547 18 C 0.043 3.957 19 C 0.125 3.875 20 N -1.004 6.004 21 S 2.614 3.386 22 C -0.653 4.653 23 O -0.995 6.995 24 O -0.992 6.992 25 C 0.127 3.873 26 C 0.036 3.964 27 H 0.037 0.963 28 H 0.069 0.931 29 H 0.033 0.967 30 H -0.011 1.011 31 H -0.014 1.014 32 H 0.261 0.739 33 H 0.058 0.942 34 H 0.017 0.983 35 H 0.343 0.657 36 H 0.066 0.934 37 H 0.029 0.971 38 H 0.040 0.960 39 H 0.084 0.916 40 H 0.051 0.949 41 H 0.097 0.903 42 H 0.106 0.894 43 H 0.072 0.928 44 H 0.143 0.857 45 H 0.147 0.853 46 H 0.143 0.857 47 H 0.071 0.929 48 H 0.101 0.899 49 H 0.051 0.949 50 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.710 7.948 -30.378 31.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.093 4.093 3 H 0.074 0.926 4 C -0.007 4.007 5 C -0.565 4.565 6 H 0.080 0.920 7 C -0.202 4.202 8 N -0.577 5.577 9 Si 0.787 3.213 10 H -0.185 1.185 11 H -0.206 1.206 12 H -0.206 1.206 13 C -0.049 4.049 14 N -0.315 5.315 15 C -0.064 4.064 16 C -0.056 4.056 17 N -0.273 5.273 18 C -0.086 4.086 19 C 0.000 4.000 20 N -0.841 5.841 21 S 2.712 3.288 22 C -0.806 4.806 23 O -0.986 6.986 24 O -0.983 6.983 25 C 0.002 3.998 26 C -0.093 4.093 27 H 0.056 0.944 28 H 0.088 0.912 29 H 0.052 0.948 30 H 0.007 0.993 31 H 0.004 0.996 32 H 0.070 0.930 33 H 0.077 0.923 34 H 0.036 0.964 35 H 0.161 0.839 36 H 0.084 0.916 37 H 0.047 0.953 38 H 0.058 0.942 39 H 0.102 0.898 40 H 0.069 0.931 41 H 0.115 0.885 42 H 0.124 0.876 43 H 0.090 0.910 44 H 0.162 0.838 45 H 0.165 0.835 46 H 0.162 0.838 47 H 0.090 0.910 48 H 0.119 0.881 49 H 0.069 0.931 50 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 1.196 6.441 -31.011 31.695 hybrid contribution 1.251 1.389 1.612 2.468 sum 2.447 7.830 -29.399 30.522 Atomic orbital electron populations 1.21487 0.94687 1.00311 1.00564 1.21018 0.96727 0.98456 0.93106 0.92614 1.19029 0.94093 0.94692 0.92860 1.21684 1.34225 1.08550 0.92050 0.91983 1.25975 0.95344 0.96150 1.02737 1.70112 1.40410 1.22984 1.24179 0.85441 0.78022 0.78896 0.78951 1.18472 1.20648 1.20607 1.21801 0.96460 0.97249 0.89386 1.60359 1.64173 1.05894 1.01113 1.21902 0.97162 0.98553 0.88827 1.21884 1.01158 0.94718 0.87880 1.61708 1.07692 1.55690 1.02193 1.22540 1.00991 0.96016 0.89056 1.21599 0.78354 1.01545 0.98501 1.57695 1.16421 1.80796 1.29237 1.04564 0.72817 0.78861 0.72532 1.30389 1.13857 1.23075 1.13284 1.93564 1.51620 1.67259 1.86140 1.93560 1.63208 1.86770 1.54733 1.21624 0.97114 0.98525 0.82583 1.22679 0.88011 0.99492 0.99124 0.94431 0.91245 0.94808 0.99303 0.99576 0.92992 0.92304 0.96435 0.83899 0.91562 0.95302 0.94201 0.89774 0.93094 0.88488 0.87611 0.90977 0.83850 0.83492 0.83834 0.91050 0.88068 0.93127 0.89571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.21 8.89 71.98 0.64 -3.57 16 2 C -0.07 -2.94 2.48 -10.79 -0.03 -2.97 16 3 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 4 C 0.03 1.61 4.45 29.85 0.13 1.74 16 5 C -0.53 -29.60 8.41 25.60 0.22 -29.39 16 6 H 0.06 3.35 7.06 -2.91 -0.02 3.33 16 7 C -0.01 -0.29 5.46 84.65 0.46 0.17 16 8 N -0.94 -57.18 13.29 21.45 0.28 -56.90 16 9 Si 0.96 44.29 29.54 68.60 2.03 46.31 16 10 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 11 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 12 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 13 C 0.08 2.65 5.07 86.30 0.44 3.09 16 14 N -0.68 -17.18 5.96 -513.90 -3.06 -20.24 16 15 C 0.06 1.34 5.62 86.31 0.48 1.82 16 16 C 0.07 1.10 5.22 86.31 0.45 1.55 16 17 N -0.55 -7.52 4.63 -894.30 -4.14 -11.66 16 18 C 0.04 0.42 5.62 86.38 0.49 0.90 16 19 C 0.13 1.32 6.46 86.35 0.56 1.87 16 20 N -1.00 -11.75 3.25 -511.34 -1.66 -13.42 16 21 S 2.61 32.43 6.06 -56.49 -0.34 32.09 16 22 C -0.65 -2.12 10.99 113.37 1.25 -0.88 16 23 O -1.00 -20.00 16.78 -127.65 -2.14 -22.14 16 24 O -0.99 -19.01 16.79 -127.65 -2.14 -21.16 16 25 C 0.13 1.57 6.50 86.50 0.56 2.13 16 26 C 0.04 0.44 5.48 86.54 0.47 0.91 16 27 H 0.04 1.50 6.95 -2.39 -0.02 1.48 16 28 H 0.07 2.20 7.75 -2.39 -0.02 2.18 16 29 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 30 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 16 31 H -0.01 -0.80 8.14 -2.39 -0.02 -0.82 16 32 H 0.26 15.00 8.31 -92.71 -0.77 14.23 16 33 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 34 H 0.02 0.59 8.14 -2.39 -0.02 0.57 16 35 H 0.34 7.82 8.73 -89.70 -0.78 7.04 16 36 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 37 H 0.03 0.59 6.40 -2.39 -0.02 0.57 16 38 H 0.04 0.56 8.12 -2.39 -0.02 0.54 16 39 H 0.08 1.35 7.97 -2.38 -0.02 1.33 16 40 H 0.05 0.36 8.14 -2.39 -0.02 0.35 16 41 H 0.10 0.81 7.99 -2.39 -0.02 0.80 16 42 H 0.11 0.83 7.19 -2.39 -0.02 0.81 16 43 H 0.07 0.91 8.14 -2.38 -0.02 0.89 16 44 H 0.14 0.14 8.14 -2.39 -0.02 0.12 16 45 H 0.15 0.01 8.14 -2.39 -0.02 -0.01 16 46 H 0.14 0.13 8.14 -2.39 -0.02 0.11 16 47 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 48 H 0.10 1.06 7.18 -2.39 -0.02 1.05 16 49 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 50 H 0.09 1.14 6.16 -2.38 -0.01 1.13 16 Total: -1.00 -75.86 402.06 -4.94 -80.80 By element: Atomic # 1 Polarization: 8.80 SS G_CDS: 0.12 Total: 8.92 kcal Atomic # 6 Polarization: -28.74 SS G_CDS: 6.12 Total: -22.62 kcal Atomic # 7 Polarization: -93.63 SS G_CDS: -8.58 Total: -102.21 kcal Atomic # 8 Polarization: -39.01 SS G_CDS: -4.29 Total: -43.30 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.31 kcal Atomic # 16 Polarization: 32.43 SS G_CDS: -0.34 Total: 32.09 kcal Total: -75.86 -4.94 -80.80 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602551866.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.507 kcal (2) G-P(sol) polarization free energy of solvation -75.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds