Wall clock time and date at job start Tue Mar 31 2020 18:26:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86795 * 120.00229 * 2 1 4 4 H 1.48503 * 109.47294 * 269.99778 * 3 2 1 5 5 H 1.48499 * 109.47218 * 29.99638 * 3 2 1 6 6 H 1.48496 * 109.47166 * 149.99470 * 3 2 1 7 7 C 1.38811 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00195 * 180.02562 * 7 2 1 9 9 N 1.36943 * 120.00012 * 0.02562 * 7 2 1 10 10 C 1.46498 * 119.99752 * 180.27737 * 9 7 2 11 11 C 1.50700 * 109.46769 * 179.72432 * 10 9 7 12 12 C 1.35352 * 126.75361 * 94.71485 * 11 10 9 13 13 N 1.35317 * 106.17693 * 179.84844 * 12 11 10 14 14 C 1.46491 * 125.87029 * 180.18381 * 13 12 11 15 15 C 1.50703 * 109.47207 * 125.29585 * 14 13 12 16 16 O 1.21281 * 119.99993 * 359.97438 * 15 14 13 17 17 N 1.34774 * 119.99618 * 180.02562 * 15 14 13 18 18 C 1.46506 * 119.99664 * 179.97438 * 17 15 14 19 19 C 1.52996 * 109.46960 * 180.02562 * 18 17 15 20 20 C 1.50703 * 109.46914 * 180.02562 * 19 18 17 21 21 C 1.29448 * 117.96455 * 94.73393 * 20 19 18 22 22 C 1.50063 * 124.07827 * 180.23578 * 21 20 19 23 23 C 1.53026 * 110.19897 * 343.32104 * 22 21 20 24 24 C 1.53388 * 108.44098 * 49.24930 * 23 22 21 25 25 C 1.50072 * 117.96236 * 274.99788 * 20 19 18 26 26 N 1.28721 * 108.25949 * 0.41126 * 13 12 11 27 27 N 1.28636 * 110.17920 * 359.73997 * 26 13 12 28 28 H 0.96999 * 119.99739 * 0.02562 * 1 2 3 29 29 H 0.97001 * 119.99803 * 359.97438 * 9 7 2 30 30 H 1.09004 * 109.46963 * 299.72226 * 10 9 7 31 31 H 1.08994 * 109.47567 * 59.72378 * 10 9 7 32 32 H 1.08002 * 126.90994 * 359.97438 * 12 11 10 33 33 H 1.08997 * 109.47170 * 245.29472 * 14 13 12 34 34 H 1.08999 * 109.46977 * 5.29533 * 14 13 12 35 35 H 0.97000 * 120.00741 * 0.02562 * 17 15 14 36 36 H 1.08997 * 109.47095 * 300.00147 * 18 17 15 37 37 H 1.08999 * 109.47017 * 60.00187 * 18 17 15 38 38 H 1.08997 * 109.47224 * 299.99930 * 19 18 17 39 39 H 1.08999 * 109.47215 * 60.00171 * 19 18 17 40 40 H 1.07994 * 117.95918 * 0.46888 * 21 20 19 41 41 H 1.08996 * 109.48372 * 222.99993 * 22 21 20 42 42 H 1.08997 * 109.17536 * 103.44533 * 22 21 20 43 43 H 1.08995 * 109.63993 * 289.55898 * 23 22 21 44 44 H 1.08999 * 109.63766 * 168.93263 * 23 22 21 45 45 H 1.09004 * 109.64524 * 172.88212 * 24 23 22 46 46 H 1.08998 * 109.64364 * 52.24546 * 24 23 22 47 47 H 1.08996 * 109.35906 * 283.05904 * 25 20 19 48 48 H 1.09001 * 109.35556 * 42.77481 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4979 2.0463 -1.4001 5 1 1.4478 2.6527 0.7000 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2023 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0579 -3.6568 0.0072 11 6 1.0785 -4.8022 0.0126 12 6 0.6204 -5.4811 -1.0649 13 7 -0.2302 -6.4183 -0.5863 14 6 -0.9688 -7.3968 -1.3882 15 6 -0.6790 -8.7852 -0.8788 16 8 0.0712 -8.9419 0.0613 17 7 -1.2526 -9.8527 -1.4685 18 6 -0.9703 -11.2025 -0.9737 19 6 -1.7409 -12.2244 -1.8119 20 6 -1.4510 -13.6128 -1.3025 21 6 -2.2740 -14.1297 -0.4474 22 6 -2.1157 -15.4965 0.1516 23 6 -1.1258 -16.3230 -0.6722 24 6 0.1365 -15.4820 -0.9005 25 6 -0.2230 -14.3078 -1.8135 26 7 -0.2825 -6.2992 0.6943 27 7 0.4867 -5.3442 1.0829 28 1 -0.4850 0.8401 -0.0004 29 1 0.3555 -2.3880 0.0005 30 1 2.6849 -3.7190 -0.8822 31 1 2.6842 -3.7101 0.8977 32 1 0.8827 -5.3105 -2.0986 33 1 -2.0376 -7.1973 -1.3110 34 1 -0.6593 -7.3202 -2.4305 35 1 -1.8516 -9.7275 -2.2211 36 1 0.0985 -11.4016 -1.0508 37 1 -1.2800 -11.2795 0.0686 38 1 -2.8098 -12.0254 -1.7352 39 1 -1.4308 -12.1473 -2.8541 40 1 -3.1298 -13.5423 -0.1494 41 1 -3.0820 -16.0006 0.1676 42 1 -1.7442 -15.3994 1.1717 43 1 -1.5733 -16.5804 -1.6321 44 1 -0.8671 -17.2323 -0.1295 45 1 0.9035 -16.0939 -1.3754 46 1 0.5032 -15.1050 0.0542 47 1 -0.4103 -14.6778 -2.8214 48 1 0.6080 -13.6027 -1.8361 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603168708.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:26:20 Heat of formation + Delta-G solvation = 79.525439 kcal Electronic energy + Delta-G solvation = -26826.502357 eV Core-core repulsion = 22918.934429 eV Total energy + Delta-G solvation = -3907.567928 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.88643 -40.11034 -39.21131 -35.93545 -35.07988 -34.06643 -33.22903 -31.75808 -31.26457 -29.93111 -29.58816 -27.89809 -25.70939 -24.28747 -23.53358 -22.77810 -22.09165 -21.77520 -21.15674 -20.33379 -18.09759 -17.79794 -17.49856 -16.97278 -16.37801 -16.26875 -15.64631 -15.61957 -14.87577 -14.86191 -14.61732 -14.44974 -14.25709 -13.97750 -13.72533 -13.54524 -13.13356 -13.08665 -13.02482 -12.78765 -12.57355 -12.51897 -12.32348 -11.86158 -11.76612 -11.29032 -11.16616 -10.95706 -10.84016 -10.75877 -10.74557 -10.50489 -10.33505 -10.04227 -9.78213 -9.62091 -9.55897 -9.26166 -8.82924 -8.73058 -6.86081 -5.69194 -2.98405 1.66092 1.85911 2.15899 2.25551 2.85428 3.04941 3.48973 3.54196 3.56525 4.03713 4.14218 4.21259 4.31357 4.41548 4.51463 4.54393 4.61417 4.67235 4.74103 4.82083 4.82831 4.87592 5.04557 5.08737 5.10666 5.32601 5.35401 5.37694 5.41488 5.48617 5.52605 5.54892 5.56889 5.69585 5.69944 5.83264 5.88011 5.90969 6.16106 6.23985 6.49275 6.50122 6.72624 6.74875 6.86050 6.98448 7.74572 7.76048 8.48286 8.96117 9.60014 10.16362 10.52678 11.53689 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.043733 B = 0.001488 C = 0.001479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 640.092841 B =18815.471841 C =18932.801824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.014 4.014 3 Si 0.909 3.091 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.281 1.281 7 C -0.238 4.238 8 H 0.073 0.927 9 N -0.726 5.726 10 C 0.233 3.767 11 C -0.003 4.003 12 C -0.047 4.047 13 N -0.295 5.295 14 C 0.102 3.898 15 C 0.501 3.499 16 O -0.501 6.501 17 N -0.731 5.731 18 C 0.126 3.874 19 C -0.098 4.098 20 C -0.122 4.122 21 C -0.147 4.147 22 C -0.092 4.092 23 C -0.121 4.121 24 C -0.122 4.122 25 C -0.084 4.084 26 N -0.069 5.069 27 N -0.254 5.254 28 H 0.254 0.746 29 H 0.385 0.615 30 H 0.038 0.962 31 H 0.039 0.961 32 H 0.189 0.811 33 H 0.127 0.873 34 H 0.133 0.867 35 H 0.402 0.598 36 H 0.070 0.930 37 H 0.071 0.929 38 H 0.075 0.925 39 H 0.076 0.924 40 H 0.104 0.896 41 H 0.071 0.929 42 H 0.074 0.926 43 H 0.063 0.937 44 H 0.064 0.936 45 H 0.065 0.935 46 H 0.066 0.934 47 H 0.073 0.927 48 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.657 -35.178 -10.287 37.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.210 4.210 3 Si 0.740 3.260 4 H -0.218 1.218 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.369 4.369 8 H 0.091 0.909 9 N -0.371 5.371 10 C 0.104 3.896 11 C -0.140 4.140 12 C -0.196 4.196 13 N -0.089 5.089 14 C -0.024 4.024 15 C 0.284 3.716 16 O -0.373 6.373 17 N -0.385 5.385 18 C 0.003 3.997 19 C -0.136 4.136 20 C -0.122 4.122 21 C -0.166 4.166 22 C -0.129 4.129 23 C -0.158 4.158 24 C -0.159 4.159 25 C -0.121 4.121 26 N -0.048 5.048 27 N -0.122 5.122 28 H 0.064 0.936 29 H 0.219 0.781 30 H 0.055 0.945 31 H 0.057 0.943 32 H 0.206 0.794 33 H 0.144 0.856 34 H 0.151 0.849 35 H 0.236 0.764 36 H 0.088 0.912 37 H 0.089 0.911 38 H 0.094 0.906 39 H 0.095 0.905 40 H 0.122 0.878 41 H 0.090 0.910 42 H 0.092 0.908 43 H 0.082 0.918 44 H 0.083 0.917 45 H 0.084 0.916 46 H 0.084 0.916 47 H 0.091 0.909 48 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -6.571 -35.711 -8.271 37.241 hybrid contribution 0.026 1.330 -1.543 2.037 sum -6.545 -34.381 -9.814 36.349 Atomic orbital electron populations 1.69688 1.05165 1.25562 1.57711 1.24751 0.95516 0.97679 1.03022 0.86154 0.78676 0.83742 0.77405 1.21787 1.21824 1.20677 1.19251 0.91121 0.83865 1.42708 0.90883 1.42317 1.05987 0.99267 1.89486 1.18947 0.90056 0.81353 0.99270 1.22447 1.02392 1.00763 0.88418 1.23352 0.99080 0.95116 1.02049 1.46637 1.31523 1.23881 1.06842 1.21690 0.99328 0.85533 0.95877 1.20408 0.81257 0.86148 0.83800 1.90866 1.34504 1.85651 1.26295 1.45862 1.50017 1.06149 1.36495 1.21343 1.00420 0.79512 0.98406 1.20933 1.00743 0.92023 0.99857 1.20609 0.97305 0.95187 0.99121 1.21999 0.99430 0.97251 0.97875 1.20449 0.99738 0.93314 0.99355 1.21607 0.95852 0.98064 1.00322 1.21614 0.97526 0.96635 1.00149 1.20407 0.95486 0.97034 0.99150 1.78361 1.19083 1.15396 0.91951 1.75127 1.06813 1.04104 1.26130 0.93578 0.78105 0.94461 0.94278 0.79353 0.85563 0.84873 0.76370 0.91200 0.91098 0.90612 0.90512 0.87800 0.91048 0.90772 0.91787 0.91696 0.91584 0.91569 0.90879 0.90934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.09 13.06 55.49 0.72 -28.36 16 2 C -0.01 -0.41 5.50 -17.43 -0.10 -0.50 16 3 Si 0.91 22.82 29.55 -169.99 -5.02 17.80 16 4 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 5 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 6 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 7 C -0.24 -6.87 9.99 -15.06 -0.15 -7.02 16 8 H 0.07 2.01 7.83 -52.49 -0.41 1.59 16 9 N -0.73 -19.51 5.59 -61.09 -0.34 -19.85 16 10 C 0.23 5.13 6.82 -5.19 -0.04 5.10 16 11 C 0.00 -0.06 6.61 -82.78 -0.55 -0.61 16 12 C -0.05 -0.74 11.50 -17.04 -0.20 -0.94 16 13 N -0.29 -4.49 3.20 -62.45 -0.20 -4.69 16 14 C 0.10 0.88 6.94 -5.20 -0.04 0.84 16 15 C 0.50 5.19 7.84 -10.98 -0.09 5.10 16 16 O -0.50 -8.11 15.68 5.56 0.09 -8.03 16 17 N -0.73 -4.51 5.56 -60.29 -0.33 -4.84 16 18 C 0.13 0.85 5.66 -4.04 -0.02 0.83 16 19 C -0.10 -0.42 5.34 -27.88 -0.15 -0.57 16 20 C -0.12 -0.65 5.09 -100.94 -0.51 -1.16 16 21 C -0.15 -0.82 9.37 -35.90 -0.34 -1.16 16 22 C -0.09 -0.45 6.11 -28.18 -0.17 -0.62 16 23 C -0.12 -0.55 6.01 -26.52 -0.16 -0.71 16 24 C -0.12 -0.60 6.01 -26.52 -0.16 -0.76 16 25 C -0.08 -0.42 5.80 -28.17 -0.16 -0.58 16 26 N -0.07 -1.36 12.13 60.35 0.73 -0.63 16 27 N -0.25 -5.66 12.41 33.29 0.41 -5.24 16 28 H 0.25 7.64 8.31 -40.82 -0.34 7.30 16 29 H 0.39 11.12 7.66 -40.82 -0.31 10.80 16 30 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.19 2.21 8.06 -52.49 -0.42 1.79 16 33 H 0.13 0.77 8.14 -51.93 -0.42 0.34 16 34 H 0.13 0.56 8.07 -51.93 -0.42 0.14 16 35 H 0.40 0.97 8.47 -40.82 -0.35 0.63 16 36 H 0.07 0.56 8.11 -51.93 -0.42 0.14 16 37 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.08 0.27 7.80 -51.93 -0.40 -0.13 16 39 H 0.08 0.25 8.11 -51.93 -0.42 -0.17 16 40 H 0.10 0.54 7.74 -52.49 -0.41 0.14 16 41 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 42 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 43 H 0.06 0.29 8.12 -51.93 -0.42 -0.13 16 44 H 0.06 0.26 8.14 -51.93 -0.42 -0.17 16 45 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 46 H 0.07 0.38 8.12 -51.93 -0.42 -0.05 16 47 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 48 H 0.07 0.37 8.11 -51.93 -0.42 -0.05 16 LS Contribution 400.89 15.07 6.04 6.04 Total: -1.00 -39.57 400.89 -8.50 -48.07 By element: Atomic # 1 Polarization: 10.28 SS G_CDS: -7.77 Total: 2.51 kcal Atomic # 6 Polarization: 0.05 SS G_CDS: -2.82 Total: -2.77 kcal Atomic # 7 Polarization: -64.61 SS G_CDS: 0.99 Total: -63.61 kcal Atomic # 8 Polarization: -8.11 SS G_CDS: 0.09 Total: -8.03 kcal Atomic # 14 Polarization: 22.82 SS G_CDS: -5.02 Total: 17.80 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -39.57 -8.50 -48.07 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603168708.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.593 kcal (2) G-P(sol) polarization free energy of solvation -39.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.068 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds