Wall clock time and date at job start Tue Mar 31 2020 18:26:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86795 * 120.00229 * 2 1 4 4 H 1.48503 * 109.47294 * 269.99778 * 3 2 1 5 5 H 1.48499 * 109.47218 * 29.99638 * 3 2 1 6 6 H 1.48496 * 109.47166 * 149.99470 * 3 2 1 7 7 C 1.38811 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00195 * 180.02562 * 7 2 1 9 9 N 1.36943 * 120.00012 * 0.02562 * 7 2 1 10 10 C 1.46498 * 119.99752 * 180.27737 * 9 7 2 11 11 C 1.50700 * 109.46769 * 179.72432 * 10 9 7 12 12 C 1.35352 * 126.75361 * 94.71485 * 11 10 9 13 13 N 1.35317 * 106.17693 * 179.84844 * 12 11 10 14 14 C 1.46491 * 125.87029 * 180.18381 * 13 12 11 15 15 C 1.50703 * 109.47207 * 125.29585 * 14 13 12 16 16 O 1.21281 * 119.99993 * 359.97438 * 15 14 13 17 17 N 1.34774 * 119.99618 * 180.02562 * 15 14 13 18 18 C 1.46506 * 119.99664 * 179.97438 * 17 15 14 19 19 C 1.52996 * 109.46960 * 180.02562 * 18 17 15 20 20 C 1.50703 * 109.46914 * 180.02562 * 19 18 17 21 21 C 1.29448 * 117.96455 * 94.73393 * 20 19 18 22 22 C 1.50063 * 124.07827 * 180.23578 * 21 20 19 23 23 C 1.53026 * 110.19897 * 343.32104 * 22 21 20 24 24 C 1.53388 * 108.44098 * 49.24930 * 23 22 21 25 25 C 1.50072 * 117.96236 * 274.99788 * 20 19 18 26 26 N 1.28721 * 108.25949 * 0.41126 * 13 12 11 27 27 N 1.28636 * 110.17920 * 359.73997 * 26 13 12 28 28 H 0.96999 * 119.99739 * 0.02562 * 1 2 3 29 29 H 0.97001 * 119.99803 * 359.97438 * 9 7 2 30 30 H 1.09004 * 109.46963 * 299.72226 * 10 9 7 31 31 H 1.08994 * 109.47567 * 59.72378 * 10 9 7 32 32 H 1.08002 * 126.90994 * 359.97438 * 12 11 10 33 33 H 1.08997 * 109.47170 * 245.29472 * 14 13 12 34 34 H 1.08999 * 109.46977 * 5.29533 * 14 13 12 35 35 H 0.97000 * 120.00741 * 0.02562 * 17 15 14 36 36 H 1.08997 * 109.47095 * 300.00147 * 18 17 15 37 37 H 1.08999 * 109.47017 * 60.00187 * 18 17 15 38 38 H 1.08997 * 109.47224 * 299.99930 * 19 18 17 39 39 H 1.08999 * 109.47215 * 60.00171 * 19 18 17 40 40 H 1.07994 * 117.95918 * 0.46888 * 21 20 19 41 41 H 1.08996 * 109.48372 * 222.99993 * 22 21 20 42 42 H 1.08997 * 109.17536 * 103.44533 * 22 21 20 43 43 H 1.08995 * 109.63993 * 289.55898 * 23 22 21 44 44 H 1.08999 * 109.63766 * 168.93263 * 23 22 21 45 45 H 1.09004 * 109.64524 * 172.88212 * 24 23 22 46 46 H 1.08998 * 109.64364 * 52.24546 * 24 23 22 47 47 H 1.08996 * 109.35906 * 283.05904 * 25 20 19 48 48 H 1.09001 * 109.35556 * 42.77481 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4979 2.0463 -1.4001 5 1 1.4478 2.6527 0.7000 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2023 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0579 -3.6568 0.0072 11 6 1.0785 -4.8022 0.0126 12 6 0.6204 -5.4811 -1.0649 13 7 -0.2302 -6.4183 -0.5863 14 6 -0.9688 -7.3968 -1.3882 15 6 -0.6790 -8.7852 -0.8788 16 8 0.0712 -8.9419 0.0613 17 7 -1.2526 -9.8527 -1.4685 18 6 -0.9703 -11.2025 -0.9737 19 6 -1.7409 -12.2244 -1.8119 20 6 -1.4510 -13.6128 -1.3025 21 6 -2.2740 -14.1297 -0.4474 22 6 -2.1157 -15.4965 0.1516 23 6 -1.1258 -16.3230 -0.6722 24 6 0.1365 -15.4820 -0.9005 25 6 -0.2230 -14.3078 -1.8135 26 7 -0.2825 -6.2992 0.6943 27 7 0.4867 -5.3442 1.0829 28 1 -0.4850 0.8401 -0.0004 29 1 0.3555 -2.3880 0.0005 30 1 2.6849 -3.7190 -0.8822 31 1 2.6842 -3.7101 0.8977 32 1 0.8827 -5.3105 -2.0986 33 1 -2.0376 -7.1973 -1.3110 34 1 -0.6593 -7.3202 -2.4305 35 1 -1.8516 -9.7275 -2.2211 36 1 0.0985 -11.4016 -1.0508 37 1 -1.2800 -11.2795 0.0686 38 1 -2.8098 -12.0254 -1.7352 39 1 -1.4308 -12.1473 -2.8541 40 1 -3.1298 -13.5423 -0.1494 41 1 -3.0820 -16.0006 0.1676 42 1 -1.7442 -15.3994 1.1717 43 1 -1.5733 -16.5804 -1.6321 44 1 -0.8671 -17.2323 -0.1295 45 1 0.9035 -16.0939 -1.3754 46 1 0.5032 -15.1050 0.0542 47 1 -0.4103 -14.6778 -2.8214 48 1 0.6080 -13.6027 -1.8361 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603168708.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:26:20 Heat of formation + Delta-G solvation = 50.324840 kcal Electronic energy + Delta-G solvation = -26827.768590 eV Core-core repulsion = 22918.934429 eV Total energy + Delta-G solvation = -3908.834161 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -44.21529 -40.89346 -39.66379 -36.91592 -36.51013 -35.45158 -33.81394 -33.58285 -31.65607 -31.57910 -30.46986 -28.61178 -27.53660 -24.85253 -24.73889 -23.99514 -23.14204 -22.44808 -22.21688 -21.38911 -19.36395 -18.66599 -18.42535 -18.31930 -17.20176 -16.94604 -16.68138 -16.45280 -16.23872 -15.84341 -15.60014 -15.38224 -15.25565 -15.10251 -14.74114 -14.62119 -14.31869 -14.11112 -13.78194 -13.55089 -13.42484 -13.33410 -13.01687 -12.96628 -12.75804 -12.75081 -12.47088 -12.21636 -12.07573 -11.87632 -11.82171 -11.67897 -11.55783 -11.32164 -11.09761 -10.94335 -10.80348 -10.24551 -10.16076 -9.68062 -9.00106 -7.91508 -5.21897 0.61781 1.20476 1.34899 1.39758 1.49252 1.53850 1.55181 1.63039 2.11676 2.61278 3.32415 3.41553 3.56875 3.75267 3.76418 3.83297 4.01639 4.03519 4.04975 4.07202 4.12599 4.22985 4.28951 4.34239 4.40516 4.48226 4.58302 4.61795 4.69200 4.71898 4.87603 4.88471 4.98191 5.03675 5.05558 5.10703 5.16825 5.18024 5.19734 5.28680 5.33800 5.44791 5.52618 5.62809 5.76173 6.09635 6.28160 6.39190 7.09194 7.35104 7.56158 8.06140 8.33089 9.32456 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.043733 B = 0.001488 C = 0.001479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 640.092841 B =18815.471841 C =18932.801824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.076 4.076 3 Si 0.980 3.020 4 H -0.281 1.281 5 H -0.298 1.298 6 H -0.269 1.269 7 C -0.246 4.246 8 H 0.084 0.916 9 N -0.738 5.738 10 C 0.237 3.763 11 C -0.043 4.043 12 C -0.016 4.016 13 N -0.281 5.281 14 C 0.090 3.910 15 C 0.499 3.501 16 O -0.569 6.569 17 N -0.705 5.705 18 C 0.129 3.871 19 C -0.087 4.087 20 C -0.128 4.128 21 C -0.159 4.159 22 C -0.095 4.095 23 C -0.119 4.119 24 C -0.124 4.124 25 C -0.085 4.085 26 N -0.097 5.097 27 N -0.306 5.306 28 H 0.251 0.749 29 H 0.371 0.629 30 H 0.066 0.934 31 H 0.023 0.977 32 H 0.239 0.761 33 H 0.159 0.841 34 H 0.191 0.809 35 H 0.425 0.575 36 H 0.055 0.945 37 H 0.047 0.953 38 H 0.088 0.912 39 H 0.095 0.905 40 H 0.106 0.894 41 H 0.078 0.922 42 H 0.068 0.932 43 H 0.067 0.933 44 H 0.069 0.931 45 H 0.073 0.927 46 H 0.053 0.947 47 H 0.083 0.917 48 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.901 -35.992 -13.367 39.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.623 5.623 2 C -0.268 4.268 3 Si 0.808 3.192 4 H -0.208 1.208 5 H -0.225 1.225 6 H -0.194 1.194 7 C -0.377 4.377 8 H 0.101 0.899 9 N -0.381 5.381 10 C 0.109 3.891 11 C -0.181 4.181 12 C -0.167 4.167 13 N -0.075 5.075 14 C -0.033 4.033 15 C 0.284 3.716 16 O -0.447 6.447 17 N -0.360 5.360 18 C 0.006 3.994 19 C -0.124 4.124 20 C -0.129 4.129 21 C -0.177 4.177 22 C -0.132 4.132 23 C -0.157 4.157 24 C -0.162 4.162 25 C -0.122 4.122 26 N -0.076 5.076 27 N -0.173 5.173 28 H 0.059 0.941 29 H 0.202 0.798 30 H 0.083 0.917 31 H 0.041 0.959 32 H 0.255 0.745 33 H 0.177 0.823 34 H 0.208 0.792 35 H 0.263 0.737 36 H 0.074 0.926 37 H 0.066 0.934 38 H 0.106 0.894 39 H 0.113 0.887 40 H 0.124 0.876 41 H 0.097 0.903 42 H 0.086 0.914 43 H 0.086 0.914 44 H 0.088 0.912 45 H 0.091 0.909 46 H 0.071 0.929 47 H 0.101 0.899 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -6.840 -36.602 -11.397 38.941 hybrid contribution 0.065 1.391 -0.646 1.535 sum -6.774 -35.211 -12.043 37.825 Atomic orbital electron populations 1.69862 1.06863 1.26056 1.59513 1.25634 0.96390 1.01289 1.03513 0.85048 0.77533 0.78954 0.77635 1.20764 1.22525 1.19427 1.19715 0.91807 0.84853 1.41315 0.89859 1.42507 1.05480 1.00594 1.89476 1.18950 0.90321 0.80323 0.99502 1.22354 1.04054 1.01822 0.89845 1.23917 0.96742 0.93132 1.02889 1.47050 1.30517 1.23959 1.05970 1.22418 1.00678 0.82774 0.97395 1.20760 0.80400 0.87485 0.82946 1.90859 1.37823 1.86602 1.29427 1.45661 1.48978 1.05084 1.36230 1.21269 0.99980 0.80343 0.97851 1.20869 1.01019 0.90390 1.00125 1.20780 0.97278 0.95727 0.99103 1.22151 0.99797 0.97676 0.98065 1.20485 1.00258 0.93337 0.99082 1.21601 0.95507 0.98094 1.00468 1.21631 0.97966 0.96924 0.99647 1.20435 0.95230 0.96921 0.99620 1.78237 1.19622 1.15367 0.94424 1.75038 1.08432 1.05626 1.28212 0.94074 0.79750 0.91671 0.95864 0.74498 0.82308 0.79189 0.73661 0.92642 0.93436 0.89375 0.88658 0.87646 0.90308 0.91364 0.91446 0.91187 0.90868 0.92853 0.89856 0.91276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -61.42 13.06 21.65 0.28 -61.14 16 2 C -0.08 -4.49 5.50 84.86 0.47 -4.03 16 3 Si 0.98 46.91 29.55 68.60 2.03 48.94 16 4 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 5 H -0.30 -14.49 7.11 99.48 0.71 -13.78 16 6 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 7 C -0.25 -14.11 9.99 84.03 0.84 -13.27 16 8 H 0.08 4.50 7.83 -2.91 -0.02 4.48 16 9 N -0.74 -39.93 5.59 -347.18 -1.94 -41.87 16 10 C 0.24 10.42 6.82 85.63 0.58 11.01 16 11 C -0.04 -1.73 6.61 41.60 0.28 -1.46 16 12 C -0.02 -0.46 11.50 83.49 0.96 0.50 16 13 N -0.28 -7.96 3.20 -351.48 -1.12 -9.08 16 14 C 0.09 1.20 6.94 85.64 0.59 1.80 16 15 C 0.50 9.38 7.84 87.66 0.69 10.07 16 16 O -0.57 -18.59 15.68 -3.03 -0.05 -18.64 16 17 N -0.70 -6.89 5.56 -463.06 -2.57 -9.46 16 18 C 0.13 1.61 5.66 86.38 0.49 2.10 16 19 C -0.09 -0.55 5.34 29.85 0.16 -0.39 16 20 C -0.13 -1.23 5.09 -15.10 -0.08 -1.30 16 21 C -0.16 -1.67 9.37 27.03 0.25 -1.41 16 22 C -0.09 -0.90 6.11 29.66 0.18 -0.71 16 23 C -0.12 -1.00 6.01 30.73 0.18 -0.82 16 24 C -0.12 -1.17 6.01 30.73 0.18 -0.99 16 25 C -0.09 -0.76 5.80 29.66 0.17 -0.59 16 26 N -0.10 -3.88 12.13 37.02 0.45 -3.43 16 27 N -0.31 -14.00 12.41 -48.60 -0.60 -14.60 16 28 H 0.25 15.27 8.31 -92.71 -0.77 14.50 16 29 H 0.37 21.84 7.66 -92.71 -0.71 21.13 16 30 H 0.07 2.50 8.14 -2.38 -0.02 2.48 16 31 H 0.02 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.24 4.31 8.06 -2.91 -0.02 4.29 16 33 H 0.16 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.19 0.36 8.07 -2.39 -0.02 0.34 16 35 H 0.42 0.29 8.47 -92.71 -0.79 -0.49 16 36 H 0.06 0.88 8.11 -2.39 -0.02 0.86 16 37 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 38 H 0.09 0.38 7.80 -2.39 -0.02 0.37 16 39 H 0.09 0.30 8.11 -2.39 -0.02 0.28 16 40 H 0.11 1.03 7.74 -2.91 -0.02 1.00 16 41 H 0.08 0.60 8.14 -2.39 -0.02 0.59 16 42 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 43 H 0.07 0.53 8.12 -2.39 -0.02 0.51 16 44 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 45 H 0.07 0.57 8.14 -2.38 -0.02 0.55 16 46 H 0.05 0.63 8.12 -2.39 -0.02 0.61 16 47 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 48 H 0.07 0.66 8.11 -2.39 -0.02 0.64 16 Total: -1.00 -91.29 400.89 1.90 -89.39 By element: Atomic # 1 Polarization: 19.92 SS G_CDS: -0.52 Total: 19.40 kcal Atomic # 6 Polarization: -5.45 SS G_CDS: 5.95 Total: 0.50 kcal Atomic # 7 Polarization: -134.08 SS G_CDS: -5.51 Total: -139.59 kcal Atomic # 8 Polarization: -18.59 SS G_CDS: -0.05 Total: -18.64 kcal Atomic # 14 Polarization: 46.91 SS G_CDS: 2.03 Total: 48.94 kcal Total: -91.29 1.90 -89.39 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603168708.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.712 kcal (2) G-P(sol) polarization free energy of solvation -91.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.387 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds