Wall clock time and date at job start Tue Mar 31 2020 17:53:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.40086 * 110.99660 * 2 1 4 4 C 1.54514 * 111.50742 * 188.14846 * 3 2 1 5 5 C 1.50744 * 108.94297 * 283.98952 * 4 3 2 6 6 N 1.48070 * 112.93492 * 92.65103 * 5 4 3 7 7 C 1.46903 * 110.99559 * 192.21713 * 6 5 4 8 8 C 1.53003 * 109.46954 * 190.00235 * 7 6 5 9 9 C 1.52993 * 109.47361 * 180.02562 * 8 7 6 10 10 N 1.46502 * 109.47462 * 179.97438 * 9 8 7 11 11 S 1.65596 * 119.99904 * 164.99645 * 10 9 8 12 12 O 1.42104 * 104.27520 * 181.07269 * 11 10 9 13 13 O 1.42098 * 104.28093 * 308.93198 * 11 10 9 14 14 C 1.81401 * 104.45055 * 65.00682 * 11 10 9 15 15 C 1.52997 * 109.47173 * 179.97438 * 14 11 10 16 16 C 1.50698 * 109.46893 * 179.97438 * 15 14 11 17 17 H 1.07997 * 120.00427 * 359.97438 * 16 15 14 18 18 C 1.37877 * 120.00230 * 179.97438 * 16 15 14 19 19 N 1.31510 * 120.00527 * 179.97438 * 18 16 15 20 20 Si 1.86803 * 119.99840 * 0.02562 * 18 16 15 21 21 H 1.48505 * 109.47194 * 89.99556 * 20 18 16 22 22 H 1.48496 * 109.47362 * 209.99632 * 20 18 16 23 23 H 1.48498 * 109.47115 * 330.00230 * 20 18 16 24 24 C 1.47740 * 113.79129 * 318.28312 * 6 5 4 25 25 C 1.47689 * 111.00034 * 128.63743 * 2 1 3 26 26 H 1.08992 * 109.47459 * 56.04544 * 1 2 3 27 27 H 1.09004 * 109.47040 * 176.04695 * 1 2 3 28 28 H 1.09000 * 109.47033 * 296.04648 * 1 2 3 29 29 H 1.08996 * 109.07122 * 308.66848 * 3 2 1 30 30 H 1.08993 * 109.07240 * 67.62632 * 3 2 1 31 31 H 1.09002 * 109.55984 * 43.82877 * 4 3 2 32 32 H 1.08997 * 109.56085 * 164.14983 * 4 3 2 33 33 H 1.09001 * 108.78498 * 213.54269 * 5 4 3 34 34 H 1.08990 * 108.79134 * 331.87087 * 5 4 3 35 35 H 1.08997 * 109.47114 * 309.99713 * 7 6 5 36 36 H 1.08992 * 109.47333 * 70.00185 * 7 6 5 37 37 H 1.09004 * 109.47093 * 299.99918 * 8 7 6 38 38 H 1.08996 * 109.47504 * 59.99496 * 8 7 6 39 39 H 1.09004 * 109.47432 * 299.99962 * 9 8 7 40 40 H 1.09009 * 109.47390 * 59.99632 * 9 8 7 41 41 H 0.97001 * 119.99813 * 345.00723 * 10 9 8 42 42 H 1.09000 * 109.46798 * 299.99647 * 14 11 10 43 43 H 1.09003 * 109.47167 * 59.99263 * 14 11 10 44 44 H 1.09000 * 109.47008 * 299.99564 * 15 14 11 45 45 H 1.08995 * 109.47534 * 59.99931 * 15 14 11 46 46 H 0.97005 * 120.00171 * 180.02562 * 19 18 16 47 47 H 1.09000 * 108.99544 * 79.49951 * 24 6 5 48 48 H 1.08998 * 108.99487 * 198.25253 * 24 6 5 49 49 H 1.08992 * 109.74005 * 271.63949 * 25 2 1 50 50 H 1.09002 * 109.73725 * 32.34526 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9710 1.3078 0.0000 4 6 3.5025 1.3268 -0.2038 5 6 4.1725 0.9184 1.0833 6 7 4.4491 -0.5346 1.1541 7 6 4.8284 -0.9324 2.5164 8 6 5.3443 -2.3728 2.5020 9 6 5.7388 -2.7875 3.9208 10 7 6.2322 -4.1669 3.9071 11 16 7.0697 -4.7596 5.2069 12 8 7.4024 -6.0894 4.8326 13 8 8.0814 -3.7902 5.4435 14 6 5.8620 -4.7627 6.5604 15 6 6.5232 -5.2966 7.8327 16 6 5.5200 -5.2986 8.9572 17 1 4.5119 -4.9531 8.7822 18 6 5.8892 -5.7414 10.2097 19 7 5.0139 -5.7427 11.1912 20 14 7.6332 -6.3383 10.5127 21 1 8.4803 -5.1957 10.9394 22 1 7.6242 -7.3728 11.5781 23 1 8.1814 -6.9208 9.2616 24 6 3.3475 -1.3765 0.6440 25 6 1.9983 -0.8609 1.0770 26 1 -0.3634 0.5739 -0.8523 27 1 -0.3633 -1.0253 -0.0708 28 1 -0.3633 0.4513 0.9233 29 1 1.4977 1.8710 -0.8043 30 1 1.7325 1.7808 0.9526 31 1 3.7742 0.6275 -0.9945 32 1 3.8217 2.3322 -0.4782 33 1 5.1139 1.4599 1.1763 34 1 3.5268 1.1922 1.9176 35 1 5.6120 -0.2696 2.8836 36 1 3.9590 -0.8644 3.1701 37 1 4.5608 -3.0357 2.1347 38 1 6.2137 -2.4409 1.8481 39 1 6.5222 -2.1247 4.2886 40 1 4.8690 -2.7196 4.5744 41 1 6.0683 -4.7329 3.1366 42 1 5.5079 -3.7464 6.7336 43 1 5.0193 -5.4006 6.2940 44 1 6.8770 -6.3129 7.6592 45 1 7.3660 -4.6590 8.0993 46 1 5.2738 -6.0539 12.0725 47 1 3.3882 -1.3925 -0.4452 48 1 3.4754 -2.3925 1.0172 49 1 2.1029 -0.2811 1.9939 50 1 1.3210 -1.6982 1.2453 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603403990.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:53:52 Heat of formation + Delta-G solvation = -63.784607 kcal Electronic energy + Delta-G solvation = -26952.717796 eV Core-core repulsion = 23142.086678 eV Total energy + Delta-G solvation = -3810.631118 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.18911 -37.27748 -36.67841 -35.64054 -35.44016 -33.95518 -33.09152 -31.48987 -31.27416 -29.04055 -26.64990 -25.97741 -25.25628 -24.27558 -22.08772 -21.31402 -20.97187 -19.97436 -18.94464 -17.57982 -17.05963 -16.80821 -16.66307 -16.15042 -15.99169 -15.57209 -15.27248 -15.10698 -14.78491 -14.47642 -14.29614 -13.68295 -13.62727 -13.59797 -13.10466 -12.87555 -12.81228 -12.66533 -12.37518 -12.36141 -11.93076 -11.90874 -11.72031 -11.69031 -11.60854 -11.56041 -11.26134 -11.23004 -11.19090 -11.08023 -11.00770 -10.82955 -10.45370 -10.15198 -9.80722 -9.49748 -9.15695 -8.85327 -8.67254 -8.40223 -6.17630 -4.18876 0.68073 3.01477 3.26118 3.33523 3.37898 3.44625 3.52121 4.14377 4.33893 4.35131 4.47403 4.51735 4.59407 4.72895 4.76340 4.77751 4.89409 4.92072 5.00264 5.03040 5.07678 5.14326 5.18278 5.24814 5.32399 5.37359 5.39755 5.42497 5.44097 5.48181 5.51159 5.54460 5.60524 5.72271 5.81498 5.90721 5.94043 6.10097 6.27953 6.55678 6.73065 6.79587 6.81411 6.92409 6.96883 7.05269 7.54060 8.35412 8.83296 9.42137 10.94716 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.018172 B = 0.002130 C = 0.002009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1540.489783 B =13142.114746 C =13931.520366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.557 5.557 3 C 0.069 3.931 4 C -0.121 4.121 5 C 0.059 3.941 6 N -0.545 5.545 7 C 0.056 3.944 8 C -0.123 4.123 9 C 0.115 3.885 10 N -1.125 6.125 11 S 2.593 3.407 12 O -0.968 6.968 13 O -0.967 6.967 14 C -0.583 4.583 15 C -0.008 4.008 16 C -0.519 4.519 17 H 0.077 0.923 18 C 0.071 3.929 19 N -0.896 5.896 20 Si 0.870 3.130 21 H -0.271 1.271 22 H -0.282 1.282 23 H -0.262 1.262 24 C 0.051 3.949 25 C 0.033 3.967 26 H 0.067 0.933 27 H 0.069 0.931 28 H 0.024 0.976 29 H 0.072 0.928 30 H 0.018 0.982 31 H 0.085 0.915 32 H 0.076 0.924 33 H 0.074 0.926 34 H 0.030 0.970 35 H 0.079 0.921 36 H 0.036 0.964 37 H 0.071 0.929 38 H 0.081 0.919 39 H 0.081 0.919 40 H 0.064 0.936 41 H 0.413 0.587 42 H 0.123 0.877 43 H 0.126 0.874 44 H 0.033 0.967 45 H 0.028 0.972 46 H 0.266 0.734 47 H 0.088 0.912 48 H 0.080 0.920 49 H 0.041 0.959 50 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.026 13.855 -24.604 29.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 N -0.281 5.281 3 C -0.061 4.061 4 C -0.160 4.160 5 C -0.068 4.068 6 N -0.270 5.270 7 C -0.073 4.073 8 C -0.162 4.162 9 C -0.012 4.012 10 N -0.883 5.883 11 S 2.690 3.310 12 O -0.958 6.958 13 O -0.957 6.957 14 C -0.716 4.716 15 C -0.047 4.047 16 C -0.558 4.558 17 H 0.095 0.905 18 C -0.132 4.132 19 N -0.534 5.534 20 Si 0.696 3.304 21 H -0.197 1.197 22 H -0.208 1.208 23 H -0.186 1.186 24 C -0.077 4.077 25 C -0.096 4.096 26 H 0.086 0.914 27 H 0.088 0.912 28 H 0.042 0.958 29 H 0.090 0.910 30 H 0.036 0.964 31 H 0.104 0.896 32 H 0.095 0.905 33 H 0.093 0.907 34 H 0.048 0.952 35 H 0.097 0.903 36 H 0.054 0.946 37 H 0.090 0.910 38 H 0.099 0.901 39 H 0.099 0.901 40 H 0.082 0.918 41 H 0.246 0.754 42 H 0.142 0.858 43 H 0.144 0.856 44 H 0.051 0.949 45 H 0.047 0.953 46 H 0.076 0.924 47 H 0.106 0.894 48 H 0.099 0.901 49 H 0.059 0.941 50 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -5.545 13.433 -24.991 28.909 hybrid contribution -1.022 0.173 1.537 1.854 sum -6.567 13.606 -23.453 27.898 Atomic orbital electron populations 1.22359 0.86691 1.02390 1.00390 1.59083 1.07602 1.13736 1.47695 1.21106 0.95926 0.89131 0.99887 1.21584 0.93655 1.02257 0.98459 1.21848 1.00023 0.87909 0.97032 1.62078 1.38864 1.03492 1.22580 1.22031 0.99737 0.96549 0.88962 1.21816 1.02314 0.95753 0.96300 1.21234 0.99489 0.82367 0.98132 1.55693 1.76645 1.20983 1.34983 1.05498 0.76295 0.73704 0.75516 1.93561 1.82908 1.37691 1.81632 1.93545 1.54844 1.61856 1.85408 1.30292 1.15928 1.10515 1.14883 1.19408 0.97237 0.96568 0.91470 1.20847 0.98134 1.44372 0.92472 0.90474 1.24994 0.97436 0.94821 0.95931 1.69880 1.34593 1.46916 1.02006 0.86914 0.85189 0.79437 0.78843 1.19668 1.20772 1.18590 1.22134 0.86909 0.96629 1.01990 1.22454 0.98234 0.96889 0.91977 0.91438 0.91223 0.95777 0.90964 0.96382 0.89616 0.90509 0.90750 0.95195 0.90284 0.94585 0.91015 0.90071 0.90113 0.91791 0.75363 0.85831 0.85552 0.94902 0.95345 0.92384 0.89384 0.90144 0.94094 0.90257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 9.46 60.07 0.57 0.74 16 2 N -0.56 -3.98 4.23 -248.02 -1.05 -5.03 16 3 C 0.07 0.46 4.95 -6.55 -0.03 0.42 16 4 C -0.12 -0.77 5.68 -27.07 -0.15 -0.93 16 5 C 0.06 0.43 4.97 -4.31 -0.02 0.41 16 6 N -0.55 -4.35 4.76 -235.69 -1.12 -5.47 16 7 C 0.06 0.44 4.85 -3.82 -0.02 0.42 16 8 C -0.12 -1.00 5.27 -26.73 -0.14 -1.14 16 9 C 0.11 1.15 6.13 -4.04 -0.02 1.12 16 10 N -1.13 -13.15 5.89 -10.61 -0.06 -13.21 16 11 S 2.59 42.67 5.46 -107.50 -0.59 42.09 16 12 O -0.97 -18.73 18.08 -57.54 -1.04 -19.77 16 13 O -0.97 -18.64 17.50 -57.54 -1.01 -19.64 16 14 C -0.58 -10.40 6.01 37.16 0.22 -10.18 16 15 C -0.01 -0.18 4.05 -27.89 -0.11 -0.29 16 16 C -0.52 -14.43 9.66 -34.44 -0.33 -14.76 16 17 H 0.08 2.25 7.99 -52.49 -0.42 1.83 16 18 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 19 N -0.90 -27.01 13.96 55.43 0.77 -26.24 16 20 Si 0.87 21.47 27.47 -169.99 -4.67 16.80 16 21 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 22 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 23 H -0.26 -6.25 6.54 56.52 0.37 -5.88 16 24 C 0.05 0.38 5.10 -4.47 -0.02 0.36 16 25 C 0.03 0.24 5.30 -4.50 -0.02 0.21 16 26 H 0.07 0.34 7.98 -51.93 -0.41 -0.07 16 27 H 0.07 0.38 7.95 -51.93 -0.41 -0.04 16 28 H 0.02 0.15 8.14 -51.93 -0.42 -0.28 16 29 H 0.07 0.42 7.91 -51.93 -0.41 0.01 16 30 H 0.02 0.13 7.60 -51.93 -0.39 -0.26 16 31 H 0.09 0.64 7.19 -51.93 -0.37 0.27 16 32 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.03 0.23 6.40 -51.93 -0.33 -0.10 16 35 H 0.08 0.62 8.08 -51.93 -0.42 0.20 16 36 H 0.04 0.28 7.66 -51.93 -0.40 -0.11 16 37 H 0.07 0.52 6.07 -51.93 -0.32 0.21 16 38 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.08 0.86 7.70 -51.93 -0.40 0.46 16 40 H 0.06 0.57 8.14 -51.92 -0.42 0.14 16 41 H 0.41 4.02 8.62 -34.47 -0.30 3.72 16 42 H 0.12 1.98 8.14 -51.92 -0.42 1.55 16 43 H 0.13 2.06 8.14 -51.92 -0.42 1.63 16 44 H 0.03 0.77 7.20 -51.93 -0.37 0.40 16 45 H 0.03 0.66 7.57 -51.93 -0.39 0.27 16 46 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 47 H 0.09 0.72 7.20 -51.93 -0.37 0.35 16 48 H 0.08 0.56 5.59 -51.93 -0.29 0.27 16 49 H 0.04 0.34 6.26 -51.93 -0.33 0.01 16 50 H 0.08 0.53 7.72 -51.93 -0.40 0.13 16 LS Contribution 392.96 15.07 5.92 5.92 Total: -1.00 -34.67 392.96 -11.90 -46.57 By element: Atomic # 1 Polarization: 8.53 SS G_CDS: -8.87 Total: -0.34 kcal Atomic # 6 Polarization: -21.48 SS G_CDS: -0.19 Total: -21.67 kcal Atomic # 7 Polarization: -48.49 SS G_CDS: -1.46 Total: -49.96 kcal Atomic # 8 Polarization: -37.37 SS G_CDS: -2.05 Total: -39.42 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -4.67 Total: 16.80 kcal Atomic # 16 Polarization: 42.67 SS G_CDS: -0.59 Total: 42.09 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -34.67 -11.90 -46.57 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603403990.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.215 kcal (2) G-P(sol) polarization free energy of solvation -34.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds