Wall clock time and date at job start Tue Mar 31 2020 17:53:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.40086 * 110.99660 * 2 1 4 4 C 1.54514 * 111.50742 * 188.14846 * 3 2 1 5 5 C 1.50744 * 108.94297 * 283.98952 * 4 3 2 6 6 N 1.48070 * 112.93492 * 92.65103 * 5 4 3 7 7 C 1.46903 * 110.99559 * 192.21713 * 6 5 4 8 8 C 1.53003 * 109.46954 * 190.00235 * 7 6 5 9 9 C 1.52993 * 109.47361 * 180.02562 * 8 7 6 10 10 N 1.46502 * 109.47462 * 179.97438 * 9 8 7 11 11 S 1.65596 * 119.99904 * 164.99645 * 10 9 8 12 12 O 1.42104 * 104.27520 * 181.07269 * 11 10 9 13 13 O 1.42098 * 104.28093 * 308.93198 * 11 10 9 14 14 C 1.81401 * 104.45055 * 65.00682 * 11 10 9 15 15 C 1.52997 * 109.47173 * 179.97438 * 14 11 10 16 16 C 1.50698 * 109.46893 * 179.97438 * 15 14 11 17 17 H 1.07997 * 120.00427 * 359.97438 * 16 15 14 18 18 C 1.37877 * 120.00230 * 179.97438 * 16 15 14 19 19 N 1.31510 * 120.00527 * 179.97438 * 18 16 15 20 20 Si 1.86803 * 119.99840 * 0.02562 * 18 16 15 21 21 H 1.48505 * 109.47194 * 89.99556 * 20 18 16 22 22 H 1.48496 * 109.47362 * 209.99632 * 20 18 16 23 23 H 1.48498 * 109.47115 * 330.00230 * 20 18 16 24 24 C 1.47740 * 113.79129 * 318.28312 * 6 5 4 25 25 C 1.47689 * 111.00034 * 128.63743 * 2 1 3 26 26 H 1.08992 * 109.47459 * 56.04544 * 1 2 3 27 27 H 1.09004 * 109.47040 * 176.04695 * 1 2 3 28 28 H 1.09000 * 109.47033 * 296.04648 * 1 2 3 29 29 H 1.08996 * 109.07122 * 308.66848 * 3 2 1 30 30 H 1.08993 * 109.07240 * 67.62632 * 3 2 1 31 31 H 1.09002 * 109.55984 * 43.82877 * 4 3 2 32 32 H 1.08997 * 109.56085 * 164.14983 * 4 3 2 33 33 H 1.09001 * 108.78498 * 213.54269 * 5 4 3 34 34 H 1.08990 * 108.79134 * 331.87087 * 5 4 3 35 35 H 1.08997 * 109.47114 * 309.99713 * 7 6 5 36 36 H 1.08992 * 109.47333 * 70.00185 * 7 6 5 37 37 H 1.09004 * 109.47093 * 299.99918 * 8 7 6 38 38 H 1.08996 * 109.47504 * 59.99496 * 8 7 6 39 39 H 1.09004 * 109.47432 * 299.99962 * 9 8 7 40 40 H 1.09009 * 109.47390 * 59.99632 * 9 8 7 41 41 H 0.97001 * 119.99813 * 345.00723 * 10 9 8 42 42 H 1.09000 * 109.46798 * 299.99647 * 14 11 10 43 43 H 1.09003 * 109.47167 * 59.99263 * 14 11 10 44 44 H 1.09000 * 109.47008 * 299.99564 * 15 14 11 45 45 H 1.08995 * 109.47534 * 59.99931 * 15 14 11 46 46 H 0.97005 * 120.00171 * 180.02562 * 19 18 16 47 47 H 1.09000 * 108.99544 * 79.49951 * 24 6 5 48 48 H 1.08998 * 108.99487 * 198.25253 * 24 6 5 49 49 H 1.08992 * 109.74005 * 271.63949 * 25 2 1 50 50 H 1.09002 * 109.73725 * 32.34526 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9710 1.3078 0.0000 4 6 3.5025 1.3268 -0.2038 5 6 4.1725 0.9184 1.0833 6 7 4.4491 -0.5346 1.1541 7 6 4.8284 -0.9324 2.5164 8 6 5.3443 -2.3728 2.5020 9 6 5.7388 -2.7875 3.9208 10 7 6.2322 -4.1669 3.9071 11 16 7.0697 -4.7596 5.2069 12 8 7.4024 -6.0894 4.8326 13 8 8.0814 -3.7902 5.4435 14 6 5.8620 -4.7627 6.5604 15 6 6.5232 -5.2966 7.8327 16 6 5.5200 -5.2986 8.9572 17 1 4.5119 -4.9531 8.7822 18 6 5.8892 -5.7414 10.2097 19 7 5.0139 -5.7427 11.1912 20 14 7.6332 -6.3383 10.5127 21 1 8.4803 -5.1957 10.9394 22 1 7.6242 -7.3728 11.5781 23 1 8.1814 -6.9208 9.2616 24 6 3.3475 -1.3765 0.6440 25 6 1.9983 -0.8609 1.0770 26 1 -0.3634 0.5739 -0.8523 27 1 -0.3633 -1.0253 -0.0708 28 1 -0.3633 0.4513 0.9233 29 1 1.4977 1.8710 -0.8043 30 1 1.7325 1.7808 0.9526 31 1 3.7742 0.6275 -0.9945 32 1 3.8217 2.3322 -0.4782 33 1 5.1139 1.4599 1.1763 34 1 3.5268 1.1922 1.9176 35 1 5.6120 -0.2696 2.8836 36 1 3.9590 -0.8644 3.1701 37 1 4.5608 -3.0357 2.1347 38 1 6.2137 -2.4409 1.8481 39 1 6.5222 -2.1247 4.2886 40 1 4.8690 -2.7196 4.5744 41 1 6.0683 -4.7329 3.1366 42 1 5.5079 -3.7464 6.7336 43 1 5.0193 -5.4006 6.2940 44 1 6.8770 -6.3129 7.6592 45 1 7.3660 -4.6590 8.0993 46 1 5.2738 -6.0539 12.0725 47 1 3.3882 -1.3925 -0.4452 48 1 3.4754 -2.3925 1.0172 49 1 2.1029 -0.2811 1.9939 50 1 1.3210 -1.6982 1.2453 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603403990.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:53:51 Heat of formation + Delta-G solvation = -91.854644 kcal Electronic energy + Delta-G solvation = -26953.935004 eV Core-core repulsion = 23142.086678 eV Total energy + Delta-G solvation = -3811.848326 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.74501 -38.21165 -37.84271 -37.00886 -36.31334 -35.88115 -33.67495 -33.45954 -31.98108 -29.64031 -27.86998 -27.23972 -25.80348 -24.97712 -23.21468 -22.67887 -21.56479 -20.63764 -20.17663 -19.34837 -18.35122 -17.71565 -17.32905 -17.12415 -16.95146 -16.57090 -16.37620 -16.12406 -15.91000 -15.43912 -15.37543 -15.05896 -14.81872 -14.35465 -14.13928 -13.82868 -13.71837 -13.50822 -13.44369 -13.20262 -13.12085 -13.05413 -12.99879 -12.93596 -12.88142 -12.66494 -12.34228 -12.24316 -12.18932 -11.93753 -11.86475 -11.72229 -11.70251 -11.60781 -11.42855 -11.24012 -10.84114 -10.31185 -9.41237 -8.98672 -8.36383 -6.41833 -0.66876 1.32402 1.34388 1.44483 1.84607 2.29848 2.79005 2.87980 2.97806 2.98100 3.29983 3.81408 3.87132 3.90257 3.98415 4.06051 4.09843 4.13262 4.22225 4.25032 4.39510 4.43008 4.47849 4.55832 4.59015 4.60557 4.66469 4.71172 4.73691 4.77813 4.81390 4.92749 4.96374 4.99524 5.06995 5.09957 5.13783 5.24281 5.28142 5.30026 5.43203 5.48351 6.02211 6.15771 6.17133 6.19126 6.20735 6.43520 6.64364 7.22562 8.79070 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.018172 B = 0.002130 C = 0.002009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1540.489783 B =13142.114746 C =13931.520366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.565 5.565 3 C 0.070 3.930 4 C -0.116 4.116 5 C 0.059 3.941 6 N -0.553 5.553 7 C 0.057 3.943 8 C -0.113 4.113 9 C 0.105 3.895 10 N -1.107 6.107 11 S 2.627 3.373 12 O -0.995 6.995 13 O -0.993 6.993 14 C -0.589 4.589 15 C -0.019 4.019 16 C -0.526 4.526 17 H 0.049 0.951 18 C 0.012 3.988 19 N -0.941 5.941 20 Si 0.925 3.075 21 H -0.261 1.261 22 H -0.275 1.275 23 H -0.249 1.249 24 C 0.055 3.945 25 C 0.036 3.964 26 H 0.075 0.925 27 H 0.073 0.927 28 H 0.020 0.980 29 H 0.080 0.920 30 H 0.010 0.990 31 H 0.076 0.924 32 H 0.091 0.909 33 H 0.076 0.924 34 H 0.023 0.977 35 H 0.078 0.922 36 H 0.037 0.963 37 H 0.084 0.916 38 H 0.077 0.923 39 H 0.075 0.925 40 H 0.080 0.920 41 H 0.426 0.574 42 H 0.140 0.860 43 H 0.141 0.859 44 H 0.032 0.968 45 H 0.032 0.968 46 H 0.269 0.731 47 H 0.080 0.920 48 H 0.087 0.913 49 H 0.030 0.970 50 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.567 14.189 -26.276 30.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 N -0.289 5.289 3 C -0.060 4.060 4 C -0.154 4.154 5 C -0.068 4.068 6 N -0.278 5.278 7 C -0.071 4.071 8 C -0.152 4.152 9 C -0.021 4.021 10 N -0.869 5.869 11 S 2.722 3.278 12 O -0.985 6.985 13 O -0.982 6.982 14 C -0.720 4.720 15 C -0.058 4.058 16 C -0.565 4.565 17 H 0.068 0.932 18 C -0.187 4.187 19 N -0.580 5.580 20 Si 0.748 3.252 21 H -0.185 1.185 22 H -0.200 1.200 23 H -0.173 1.173 24 C -0.073 4.073 25 C -0.092 4.092 26 H 0.094 0.906 27 H 0.092 0.908 28 H 0.039 0.961 29 H 0.099 0.901 30 H 0.028 0.972 31 H 0.094 0.906 32 H 0.109 0.891 33 H 0.094 0.906 34 H 0.042 0.958 35 H 0.096 0.904 36 H 0.055 0.945 37 H 0.102 0.898 38 H 0.096 0.904 39 H 0.093 0.907 40 H 0.098 0.902 41 H 0.262 0.738 42 H 0.158 0.842 43 H 0.159 0.841 44 H 0.050 0.950 45 H 0.050 0.950 46 H 0.078 0.922 47 H 0.099 0.901 48 H 0.105 0.895 49 H 0.048 0.952 50 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -5.095 13.763 -26.671 30.442 hybrid contribution -1.272 0.146 1.974 2.353 sum -6.367 13.909 -24.696 29.050 Atomic orbital electron populations 1.22394 0.86017 1.02840 1.00575 1.59136 1.08309 1.13939 1.47544 1.21122 0.96119 0.88992 0.99764 1.21553 0.93453 1.02777 0.97592 1.21871 1.00048 0.87601 0.97251 1.62077 1.39235 1.03912 1.22530 1.21996 0.99744 0.96347 0.89056 1.21724 1.02527 0.96091 0.94902 1.21487 0.99919 0.80935 0.99774 1.55229 1.76187 1.21842 1.33678 1.04269 0.75566 0.72598 0.75371 1.93519 1.83469 1.39477 1.82061 1.93514 1.56100 1.62535 1.86083 1.30291 1.16799 1.11582 1.13371 1.19380 0.96676 0.97037 0.92688 1.21187 0.98014 1.43281 0.93995 0.93231 1.25889 1.01610 0.95285 0.95900 1.70008 1.36797 1.48580 1.02657 0.86016 0.80343 0.79465 0.79354 1.18541 1.20031 1.17266 1.22096 0.86842 0.96846 1.01480 1.22417 0.98342 0.96939 0.91545 0.90608 0.90770 0.96127 0.90120 0.97176 0.90557 0.89097 0.90574 0.95845 0.90393 0.94483 0.89765 0.90447 0.90651 0.90218 0.73771 0.84170 0.84127 0.94974 0.95004 0.92165 0.90122 0.89520 0.95191 0.89687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 9.46 127.69 1.21 1.52 16 2 N -0.56 -7.42 4.23 -938.59 -3.97 -11.40 16 3 C 0.07 0.84 4.95 88.05 0.44 1.28 16 4 C -0.12 -1.34 5.68 30.38 0.17 -1.17 16 5 C 0.06 0.80 4.97 85.35 0.42 1.22 16 6 N -0.55 -8.06 4.76 -899.59 -4.29 -12.34 16 7 C 0.06 0.81 4.85 86.30 0.42 1.23 16 8 C -0.11 -1.58 5.27 30.59 0.16 -1.42 16 9 C 0.11 1.85 6.13 86.38 0.53 2.38 16 10 N -1.11 -23.16 5.89 -187.48 -1.10 -24.26 16 11 S 2.63 81.61 5.46 -56.49 -0.31 81.30 16 12 O -1.00 -36.81 18.08 -127.65 -2.31 -39.12 16 13 O -0.99 -36.62 17.50 -127.65 -2.23 -38.86 16 14 C -0.59 -20.14 6.01 71.98 0.43 -19.71 16 15 C -0.02 -0.87 4.05 29.85 0.12 -0.74 16 16 C -0.53 -29.42 9.66 25.60 0.25 -29.17 16 17 H 0.05 2.95 7.99 -2.91 -0.02 2.93 16 18 C 0.01 0.67 5.47 84.66 0.46 1.13 16 19 N -0.94 -57.65 13.96 21.45 0.30 -57.35 16 20 Si 0.93 43.74 27.47 68.60 1.88 45.62 16 21 H -0.26 -11.80 7.11 99.48 0.71 -11.10 16 22 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 23 H -0.25 -11.17 6.54 99.48 0.65 -10.52 16 24 C 0.06 0.74 5.10 85.42 0.44 1.17 16 25 C 0.04 0.48 5.30 85.43 0.45 0.93 16 26 H 0.08 0.67 7.98 -2.39 -0.02 0.65 16 27 H 0.07 0.71 7.95 -2.38 -0.02 0.69 16 28 H 0.02 0.23 8.14 -2.39 -0.02 0.21 16 29 H 0.08 0.83 7.91 -2.39 -0.02 0.81 16 30 H 0.01 0.14 7.60 -2.39 -0.02 0.12 16 31 H 0.08 1.06 7.19 -2.39 -0.02 1.04 16 32 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.02 0.35 6.40 -2.39 -0.02 0.33 16 35 H 0.08 1.12 8.08 -2.39 -0.02 1.10 16 36 H 0.04 0.52 7.66 -2.39 -0.02 0.50 16 37 H 0.08 0.98 6.07 -2.38 -0.01 0.97 16 38 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 39 H 0.08 1.45 7.70 -2.39 -0.02 1.44 16 40 H 0.08 1.19 8.14 -2.38 -0.02 1.17 16 41 H 0.43 7.09 8.62 -96.75 -0.83 6.26 16 42 H 0.14 4.26 8.14 -2.39 -0.02 4.24 16 43 H 0.14 4.35 8.14 -2.39 -0.02 4.33 16 44 H 0.03 1.48 7.20 -2.39 -0.02 1.46 16 45 H 0.03 1.43 7.57 -2.39 -0.02 1.42 16 46 H 0.27 15.39 8.31 -92.70 -0.77 14.62 16 47 H 0.08 1.22 7.20 -2.39 -0.02 1.20 16 48 H 0.09 1.02 5.59 -2.39 -0.01 1.01 16 49 H 0.03 0.47 6.26 -2.39 -0.01 0.45 16 50 H 0.08 1.01 7.72 -2.39 -0.02 1.00 16 Total: -1.00 -73.93 392.96 -6.50 -80.43 By element: Atomic # 1 Polarization: 17.31 SS G_CDS: 0.02 Total: 17.33 kcal Atomic # 6 Polarization: -46.85 SS G_CDS: 5.50 Total: -41.35 kcal Atomic # 7 Polarization: -96.29 SS G_CDS: -9.06 Total: -105.35 kcal Atomic # 8 Polarization: -73.44 SS G_CDS: -4.54 Total: -77.98 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 1.88 Total: 45.62 kcal Atomic # 16 Polarization: 81.61 SS G_CDS: -0.31 Total: 81.30 kcal Total: -73.93 -6.50 -80.43 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603403990.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.423 kcal (2) G-P(sol) polarization free energy of solvation -73.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds