Wall clock time and date at job start Tue Mar 31 2020 18:16:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86808 * 119.99625 * 2 1 4 4 H 1.48504 * 109.47007 * 269.99711 * 3 2 1 5 5 H 1.48492 * 109.47037 * 29.99922 * 3 2 1 6 6 H 1.48498 * 109.47018 * 150.00268 * 3 2 1 7 7 C 1.37867 * 120.00232 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00473 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00140 * 359.97438 * 7 2 1 10 10 N 1.46499 * 109.47249 * 180.02562 * 9 7 2 11 11 C 1.34962 * 125.97845 * 124.99916 * 10 9 7 12 12 C 1.35252 * 107.85848 * 179.70310 * 11 10 9 13 13 C 1.40402 * 107.86467 * 0.42963 * 12 11 10 14 14 N 1.40196 * 125.97138 * 179.82548 * 13 12 11 15 15 C 1.34783 * 119.99617 * 359.71820 * 14 13 12 16 16 O 1.21593 * 120.00197 * 0.02562 * 15 14 13 17 17 N 1.34779 * 119.99789 * 179.97438 * 15 14 13 18 18 C 1.46491 * 119.99871 * 179.97438 * 17 15 14 19 19 H 1.09001 * 110.90733 * 31.14184 * 18 17 15 20 20 C 1.55138 * 110.99739 * 267.27056 * 18 17 15 21 21 C 1.54320 * 103.02210 * 206.25674 * 20 18 17 22 22 N 1.47437 * 107.23257 * 22.28526 * 21 20 18 23 23 C 1.46901 * 111.00223 * 123.25511 * 22 21 20 24 24 C 1.53004 * 109.46927 * 69.15826 * 23 22 21 25 25 C 1.53001 * 117.49425 * 243.62518 * 24 23 22 26 26 C 1.52998 * 117.49903 * 175.00056 * 24 23 22 27 27 C 1.47846 * 108.56923 * 0.98995 * 22 21 20 28 28 N 1.31206 * 108.05580 * 359.56496 * 13 12 11 29 29 H 0.96999 * 120.00423 * 0.02562 * 1 2 3 30 30 H 1.08999 * 109.47287 * 59.99884 * 9 7 2 31 31 H 1.08998 * 109.46994 * 299.99915 * 9 7 2 32 32 H 1.08001 * 126.07243 * 0.02562 * 11 10 9 33 33 H 1.07995 * 126.06369 * 180.25441 * 12 11 10 34 34 H 0.96995 * 120.00181 * 179.72040 * 14 13 12 35 35 H 0.97005 * 119.99460 * 0.02562 * 17 15 14 36 36 H 1.09000 * 110.70480 * 87.87312 * 20 18 17 37 37 H 1.08999 * 110.85101 * 324.71131 * 20 18 17 38 38 H 1.08998 * 109.88703 * 262.87492 * 21 20 18 39 39 H 1.08998 * 110.02181 * 141.76373 * 21 20 18 40 40 H 1.08997 * 109.47210 * 189.15098 * 23 22 21 41 41 H 1.08999 * 109.47159 * 309.15807 * 23 22 21 42 42 H 1.08994 * 115.54932 * 29.32463 * 24 23 22 43 43 H 1.08997 * 117.50248 * 359.97438 * 25 24 23 44 44 H 1.09006 * 117.49779 * 145.02436 * 25 24 23 45 45 H 1.08995 * 117.49866 * 214.97551 * 26 24 23 46 46 H 1.08996 * 117.49853 * 0.02562 * 26 24 23 47 47 H 1.08995 * 110.38030 * 94.73340 * 27 22 21 48 48 H 1.09000 * 110.37255 * 217.07995 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0045 -1.1939 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2032 -3.6126 -0.0005 11 6 2.2423 -4.6223 0.8941 12 6 3.2569 -5.4460 0.5457 13 6 3.8685 -4.9149 -0.6011 14 7 4.9643 -5.4660 -1.2800 15 6 5.5285 -6.6064 -0.8353 16 8 5.0867 -7.1575 0.1545 17 7 6.5816 -7.1365 -1.4883 18 6 7.1951 -8.3757 -1.0047 19 1 6.4543 -9.0148 -0.5243 20 6 8.3751 -8.0736 -0.0438 21 6 9.2699 -9.3225 -0.1886 22 7 8.9454 -9.9444 -1.4855 23 6 10.1447 -10.0681 -2.3248 24 6 11.0839 -11.1143 -1.7212 25 6 12.4554 -10.6378 -1.2388 26 6 12.3416 -11.4757 -2.5139 27 6 7.9125 -9.1255 -2.1550 28 7 3.2317 -3.8158 -0.9295 29 1 -0.4851 0.8400 -0.0004 30 1 0.6241 -2.5567 -0.8903 31 1 0.6248 -2.5571 0.8897 32 1 1.5779 -4.7525 1.7355 33 1 3.5470 -6.3502 1.0602 34 1 5.3164 -5.0265 -2.0698 35 1 6.9337 -6.6970 -2.2782 36 1 8.0203 -7.9705 0.9816 37 1 8.9107 -7.1774 -0.3569 38 1 9.0629 -10.0228 0.6206 39 1 10.3206 -9.0332 -0.1688 40 1 9.8549 -10.3765 -3.3293 41 1 10.6552 -9.1063 -2.3731 42 1 10.5995 -11.9101 -1.1554 43 1 12.6888 -9.5791 -1.3518 44 1 12.8737 -11.1202 -0.3553 45 1 12.6849 -12.5092 -2.4693 46 1 12.5002 -10.9679 -3.4652 47 1 8.3760 -8.4153 -2.8397 48 1 7.2086 -9.7643 -2.6885 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610326065.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:16:56 Heat of formation + Delta-G solvation = 90.882721 kcal Electronic energy + Delta-G solvation = -27365.590936 eV Core-core repulsion = 23458.515497 eV Total energy + Delta-G solvation = -3907.075439 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.79157 -40.04905 -39.12060 -37.40334 -34.79192 -34.42676 -33.31700 -31.37642 -30.63082 -29.29058 -28.85918 -26.70084 -26.07118 -23.28770 -22.82623 -22.18966 -21.75970 -21.28856 -20.52577 -20.23356 -19.78386 -18.08825 -17.08657 -16.57721 -16.46604 -16.37035 -15.57304 -15.38009 -15.21544 -14.82140 -14.64119 -14.18497 -14.13514 -13.95236 -13.71359 -13.49177 -13.19922 -12.76752 -12.42494 -12.25889 -12.16083 -12.07959 -11.94580 -11.83017 -11.71887 -11.62240 -11.08204 -11.01160 -10.89332 -10.73451 -10.41704 -10.38994 -10.25442 -10.08906 -9.69252 -9.48724 -9.27517 -8.77485 -8.62743 -8.09164 -7.40538 -6.23615 -4.28659 2.30845 2.66515 3.10737 3.23746 3.26320 3.29498 3.34542 3.46044 3.71606 3.83161 4.15407 4.23965 4.28928 4.37192 4.44523 4.48107 4.62709 4.76831 4.87473 4.90390 5.00939 5.11095 5.11473 5.18039 5.20155 5.30039 5.43896 5.50061 5.51901 5.61205 5.65628 5.76742 5.80464 5.81839 5.87574 6.18649 6.29785 6.50178 6.55623 6.59378 6.62320 6.88289 7.01471 7.11320 7.50367 7.70288 7.82826 7.97575 8.08031 8.57837 8.67384 8.81677 9.36924 10.85039 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.027248 B = 0.001716 C = 0.001661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.341763 B =16311.174679 C =16852.645660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.062 3.938 3 Si 0.908 3.092 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.528 4.528 8 H 0.069 0.931 9 C 0.259 3.741 10 N -0.320 5.320 11 C 0.051 3.949 12 C -0.286 4.286 13 C 0.275 3.725 14 N -0.643 5.643 15 C 0.715 3.285 16 O -0.565 6.565 17 N -0.737 5.737 18 C 0.159 3.841 19 H 0.110 0.890 20 C -0.157 4.157 21 C 0.044 3.956 22 N -0.523 5.523 23 C 0.082 3.918 24 C -0.145 4.145 25 C -0.184 4.184 26 C -0.178 4.178 27 C 0.036 3.964 28 N -0.308 5.308 29 H 0.267 0.733 30 H 0.045 0.955 31 H 0.057 0.943 32 H 0.168 0.832 33 H 0.161 0.839 34 H 0.406 0.594 35 H 0.396 0.604 36 H 0.083 0.917 37 H 0.069 0.931 38 H 0.081 0.919 39 H 0.060 0.940 40 H 0.078 0.922 41 H 0.038 0.962 42 H 0.114 0.886 43 H 0.091 0.909 44 H 0.093 0.907 45 H 0.095 0.905 46 H 0.093 0.907 47 H 0.051 0.949 48 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.370 -21.224 -4.658 30.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.141 4.141 3 Si 0.735 3.265 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.567 4.567 8 H 0.087 0.913 9 C 0.141 3.859 10 N -0.102 5.102 11 C -0.099 4.099 12 C -0.318 4.318 13 C 0.021 3.979 14 N -0.293 5.293 15 C 0.414 3.586 16 O -0.440 6.440 17 N -0.392 5.392 18 C 0.053 3.947 19 H 0.128 0.872 20 C -0.197 4.197 21 C -0.083 4.083 22 N -0.247 5.247 23 C -0.047 4.047 24 C -0.164 4.164 25 C -0.221 4.221 26 C -0.216 4.216 27 C -0.092 4.092 28 N -0.139 5.139 29 H 0.077 0.923 30 H 0.062 0.938 31 H 0.075 0.925 32 H 0.185 0.815 33 H 0.178 0.822 34 H 0.241 0.759 35 H 0.230 0.770 36 H 0.102 0.898 37 H 0.088 0.912 38 H 0.099 0.901 39 H 0.078 0.922 40 H 0.097 0.903 41 H 0.056 0.944 42 H 0.132 0.868 43 H 0.110 0.890 44 H 0.112 0.888 45 H 0.113 0.887 46 H 0.111 0.889 47 H 0.070 0.930 48 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 20.442 -21.051 -4.480 29.683 hybrid contribution 1.183 1.636 -0.385 2.055 sum 21.625 -19.415 -4.865 29.466 Atomic orbital electron populations 1.69917 1.06025 1.27598 1.49819 1.24940 0.94976 0.99516 0.94634 0.86330 0.79660 0.82180 0.78330 1.20371 1.20981 1.19756 1.21265 0.94002 0.89426 1.51976 0.91321 1.19732 0.85616 0.81298 0.99251 1.49049 1.23277 1.19788 1.18106 1.22559 1.00373 0.90178 0.96777 1.21512 1.02086 1.06285 1.01873 1.18775 0.90656 0.94054 0.94386 1.41373 1.31547 1.25007 1.31373 1.15598 0.79842 0.80187 0.82947 1.90873 1.64416 1.62161 1.26506 1.44909 1.33888 1.27707 1.32742 1.21878 0.94608 0.84484 0.93778 0.87174 1.23236 0.96589 0.98065 1.01792 1.22810 0.98555 0.94715 0.92261 1.63538 1.09267 1.48334 1.03598 1.21856 0.89770 0.96519 0.96512 1.22286 0.88878 1.01557 1.03665 1.23074 1.00525 1.00194 0.98356 1.22946 1.01822 1.00921 0.95900 1.23242 0.94480 0.95578 0.95901 1.77317 1.03856 1.16376 1.16383 0.92342 0.93750 0.92530 0.81525 0.82179 0.75914 0.76985 0.89809 0.91193 0.90077 0.92184 0.90343 0.94419 0.86841 0.89034 0.88804 0.88679 0.88892 0.93021 0.89148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.36 13.29 55.43 0.74 -24.62 16 2 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 3 Si 0.91 21.38 29.54 -169.99 -5.02 16.36 16 4 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 6 H -0.27 -6.42 7.11 56.52 0.40 -6.01 16 7 C -0.53 -14.75 9.24 -34.44 -0.32 -15.07 16 8 H 0.07 1.99 7.81 -52.48 -0.41 1.58 16 9 C 0.26 6.60 6.26 -5.19 -0.03 6.57 16 10 N -0.32 -7.50 3.67 -62.56 -0.23 -7.73 16 11 C 0.05 1.03 11.44 -17.24 -0.20 0.84 16 12 C -0.29 -5.75 9.61 -39.83 -0.38 -6.14 16 13 C 0.28 5.56 8.11 -154.36 -1.25 4.31 16 14 N -0.64 -9.89 5.46 -15.50 -0.08 -9.98 16 15 C 0.72 10.29 8.53 -86.91 -0.74 9.55 16 16 O -0.56 -10.04 13.11 5.28 0.07 -9.98 16 17 N -0.74 -7.08 5.20 -56.59 -0.29 -7.38 16 18 C 0.16 1.42 3.42 -65.79 -0.22 1.19 16 19 H 0.11 1.22 7.54 -51.93 -0.39 0.82 16 20 C -0.16 -1.32 6.64 -24.91 -0.17 -1.48 16 21 C 0.04 0.32 6.41 -2.84 -0.02 0.30 16 22 N -0.52 -3.78 5.16 -231.25 -1.19 -4.97 16 23 C 0.08 0.50 4.81 -3.82 -0.02 0.48 16 24 C -0.15 -0.86 5.26 -90.62 -0.48 -1.33 16 25 C -0.18 -0.98 10.08 -26.73 -0.27 -1.25 16 26 C -0.18 -0.90 10.25 -26.73 -0.27 -1.17 16 27 C 0.04 0.25 6.33 -2.29 -0.01 0.24 16 28 N -0.31 -7.12 12.42 31.44 0.39 -6.73 16 29 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 30 H 0.04 1.19 8.14 -51.93 -0.42 0.77 16 31 H 0.06 1.42 8.07 -51.93 -0.42 1.00 16 32 H 0.17 2.75 8.06 -52.49 -0.42 2.33 16 33 H 0.16 3.16 5.91 -52.49 -0.31 2.85 16 34 H 0.41 5.00 8.84 -40.82 -0.36 4.64 16 35 H 0.40 2.67 8.58 -40.82 -0.35 2.32 16 36 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 37 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 38 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.06 0.40 7.21 -51.93 -0.37 0.03 16 40 H 0.08 0.45 8.08 -51.93 -0.42 0.03 16 41 H 0.04 0.23 7.72 -51.93 -0.40 -0.17 16 42 H 0.11 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.09 0.48 8.03 -51.93 -0.42 0.06 16 44 H 0.09 0.47 8.14 -51.93 -0.42 0.04 16 45 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 46 H 0.09 0.43 8.14 -51.93 -0.42 0.00 16 47 H 0.05 0.30 7.67 -51.93 -0.40 -0.10 16 48 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 396.11 15.07 5.97 5.97 Total: -1.00 -32.63 396.11 -11.75 -44.38 By element: Atomic # 1 Polarization: 13.64 SS G_CDS: -7.61 Total: 6.02 kcal Atomic # 6 Polarization: 3.12 SS G_CDS: -4.48 Total: -1.36 kcal Atomic # 7 Polarization: -60.73 SS G_CDS: -0.68 Total: -61.40 kcal Atomic # 8 Polarization: -10.04 SS G_CDS: 0.07 Total: -9.98 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -32.63 -11.75 -44.38 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610326065.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.267 kcal (2) G-P(sol) polarization free energy of solvation -32.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.384 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds