Wall clock time and date at job start Tue Mar 31 2020 18:16:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86808 * 119.99625 * 2 1 4 4 H 1.48504 * 109.47007 * 269.99711 * 3 2 1 5 5 H 1.48492 * 109.47037 * 29.99922 * 3 2 1 6 6 H 1.48498 * 109.47018 * 150.00268 * 3 2 1 7 7 C 1.37867 * 120.00232 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00473 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00140 * 359.97438 * 7 2 1 10 10 N 1.46499 * 109.47249 * 180.02562 * 9 7 2 11 11 C 1.34962 * 125.97845 * 124.99916 * 10 9 7 12 12 C 1.35252 * 107.85848 * 179.70310 * 11 10 9 13 13 C 1.40402 * 107.86467 * 0.42963 * 12 11 10 14 14 N 1.40196 * 125.97138 * 179.82548 * 13 12 11 15 15 C 1.34783 * 119.99617 * 359.71820 * 14 13 12 16 16 O 1.21593 * 120.00197 * 0.02562 * 15 14 13 17 17 N 1.34779 * 119.99789 * 179.97438 * 15 14 13 18 18 C 1.46491 * 119.99871 * 179.97438 * 17 15 14 19 19 H 1.09001 * 110.90733 * 31.14184 * 18 17 15 20 20 C 1.55138 * 110.99739 * 267.27056 * 18 17 15 21 21 C 1.54320 * 103.02210 * 206.25674 * 20 18 17 22 22 N 1.47437 * 107.23257 * 22.28526 * 21 20 18 23 23 C 1.46901 * 111.00223 * 123.25511 * 22 21 20 24 24 C 1.53004 * 109.46927 * 69.15826 * 23 22 21 25 25 C 1.53001 * 117.49425 * 243.62518 * 24 23 22 26 26 C 1.52998 * 117.49903 * 175.00056 * 24 23 22 27 27 C 1.47846 * 108.56923 * 0.98995 * 22 21 20 28 28 N 1.31206 * 108.05580 * 359.56496 * 13 12 11 29 29 H 0.96999 * 120.00423 * 0.02562 * 1 2 3 30 30 H 1.08999 * 109.47287 * 59.99884 * 9 7 2 31 31 H 1.08998 * 109.46994 * 299.99915 * 9 7 2 32 32 H 1.08001 * 126.07243 * 0.02562 * 11 10 9 33 33 H 1.07995 * 126.06369 * 180.25441 * 12 11 10 34 34 H 0.96995 * 120.00181 * 179.72040 * 14 13 12 35 35 H 0.97005 * 119.99460 * 0.02562 * 17 15 14 36 36 H 1.09000 * 110.70480 * 87.87312 * 20 18 17 37 37 H 1.08999 * 110.85101 * 324.71131 * 20 18 17 38 38 H 1.08998 * 109.88703 * 262.87492 * 21 20 18 39 39 H 1.08998 * 110.02181 * 141.76373 * 21 20 18 40 40 H 1.08997 * 109.47210 * 189.15098 * 23 22 21 41 41 H 1.08999 * 109.47159 * 309.15807 * 23 22 21 42 42 H 1.08994 * 115.54932 * 29.32463 * 24 23 22 43 43 H 1.08997 * 117.50248 * 359.97438 * 25 24 23 44 44 H 1.09006 * 117.49779 * 145.02436 * 25 24 23 45 45 H 1.08995 * 117.49866 * 214.97551 * 26 24 23 46 46 H 1.08996 * 117.49853 * 0.02562 * 26 24 23 47 47 H 1.08995 * 110.38030 * 94.73340 * 27 22 21 48 48 H 1.09000 * 110.37255 * 217.07995 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0045 -1.1939 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2032 -3.6126 -0.0005 11 6 2.2423 -4.6223 0.8941 12 6 3.2569 -5.4460 0.5457 13 6 3.8685 -4.9149 -0.6011 14 7 4.9643 -5.4660 -1.2800 15 6 5.5285 -6.6064 -0.8353 16 8 5.0867 -7.1575 0.1545 17 7 6.5816 -7.1365 -1.4883 18 6 7.1951 -8.3757 -1.0047 19 1 6.4543 -9.0148 -0.5243 20 6 8.3751 -8.0736 -0.0438 21 6 9.2699 -9.3225 -0.1886 22 7 8.9454 -9.9444 -1.4855 23 6 10.1447 -10.0681 -2.3248 24 6 11.0839 -11.1143 -1.7212 25 6 12.4554 -10.6378 -1.2388 26 6 12.3416 -11.4757 -2.5139 27 6 7.9125 -9.1255 -2.1550 28 7 3.2317 -3.8158 -0.9295 29 1 -0.4851 0.8400 -0.0004 30 1 0.6241 -2.5567 -0.8903 31 1 0.6248 -2.5571 0.8897 32 1 1.5779 -4.7525 1.7355 33 1 3.5470 -6.3502 1.0602 34 1 5.3164 -5.0265 -2.0698 35 1 6.9337 -6.6970 -2.2782 36 1 8.0203 -7.9705 0.9816 37 1 8.9107 -7.1774 -0.3569 38 1 9.0629 -10.0228 0.6206 39 1 10.3206 -9.0332 -0.1688 40 1 9.8549 -10.3765 -3.3293 41 1 10.6552 -9.1063 -2.3731 42 1 10.5995 -11.9101 -1.1554 43 1 12.6888 -9.5791 -1.3518 44 1 12.8737 -11.1202 -0.3553 45 1 12.6849 -12.5092 -2.4693 46 1 12.5002 -10.9679 -3.4652 47 1 8.3760 -8.4153 -2.8397 48 1 7.2086 -9.7643 -2.6885 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610326065.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:16:55 Heat of formation + Delta-G solvation = 69.422829 kcal Electronic energy + Delta-G solvation = -27366.521507 eV Core-core repulsion = 23458.515497 eV Total energy + Delta-G solvation = -3908.006010 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.23032 -41.14838 -39.99092 -37.94541 -36.22222 -35.44377 -35.16986 -32.81733 -31.67776 -30.91188 -29.59890 -28.46911 -26.76671 -25.05226 -23.49221 -23.16514 -22.40225 -22.16041 -21.89925 -21.21774 -20.86674 -19.27898 -18.68585 -18.24081 -17.56662 -17.10133 -16.84530 -16.61027 -16.17848 -15.96159 -15.66295 -15.54904 -15.39224 -14.89953 -14.48048 -14.46970 -14.23543 -14.03437 -13.79269 -13.72335 -13.67733 -13.01678 -12.90127 -12.73343 -12.64106 -12.46404 -12.33978 -12.28631 -12.11106 -12.05487 -11.71962 -11.64110 -11.38670 -11.16430 -11.12453 -10.81204 -10.71731 -10.22259 -9.71943 -9.31904 -9.04945 -8.32146 -6.46471 1.06613 1.11944 1.38493 1.39096 1.50639 1.70312 2.08040 2.36037 2.40393 2.80143 2.99215 3.00462 3.24908 3.52497 3.67870 3.94589 3.98021 4.02878 4.12184 4.17672 4.28770 4.29210 4.33368 4.47407 4.55323 4.70001 4.76245 4.80032 4.81910 4.88615 4.91979 4.94468 4.96339 5.02720 5.04987 5.06516 5.16080 5.20525 5.28099 5.36388 5.48726 5.57417 5.76764 5.88245 5.94870 5.98098 6.10002 6.30197 6.64205 6.76039 7.15288 7.23535 7.42530 8.75269 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.027248 B = 0.001716 C = 0.001661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.341763 B =16311.174679 C =16852.645660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.019 3.981 3 Si 0.972 3.028 4 H -0.272 1.272 5 H -0.272 1.272 6 H -0.273 1.273 7 C -0.548 4.548 8 H 0.052 0.948 9 C 0.273 3.727 10 N -0.345 5.345 11 C 0.056 3.944 12 C -0.293 4.293 13 C 0.285 3.715 14 N -0.635 5.635 15 C 0.714 3.286 16 O -0.599 6.599 17 N -0.712 5.712 18 C 0.156 3.844 19 H 0.088 0.912 20 C -0.153 4.153 21 C 0.051 3.949 22 N -0.532 5.532 23 C 0.084 3.916 24 C -0.152 4.152 25 C -0.186 4.186 26 C -0.174 4.174 27 C 0.045 3.955 28 N -0.348 5.348 29 H 0.272 0.728 30 H 0.022 0.978 31 H 0.058 0.942 32 H 0.200 0.800 33 H 0.166 0.834 34 H 0.421 0.579 35 H 0.414 0.586 36 H 0.066 0.934 37 H 0.076 0.924 38 H 0.076 0.924 39 H 0.068 0.932 40 H 0.084 0.916 41 H 0.042 0.958 42 H 0.103 0.897 43 H 0.094 0.906 44 H 0.095 0.905 45 H 0.099 0.901 46 H 0.099 0.901 47 H 0.070 0.930 48 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.270 -21.424 -5.333 32.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.182 4.182 3 Si 0.796 3.204 4 H -0.198 1.198 5 H -0.197 1.197 6 H -0.198 1.198 7 C -0.586 4.586 8 H 0.071 0.929 9 C 0.154 3.846 10 N -0.127 5.127 11 C -0.092 4.092 12 C -0.324 4.324 13 C 0.029 3.971 14 N -0.287 5.287 15 C 0.414 3.586 16 O -0.476 6.476 17 N -0.369 5.369 18 C 0.050 3.950 19 H 0.106 0.894 20 C -0.192 4.192 21 C -0.076 4.076 22 N -0.257 5.257 23 C -0.044 4.044 24 C -0.171 4.171 25 C -0.223 4.223 26 C -0.212 4.212 27 C -0.083 4.083 28 N -0.179 5.179 29 H 0.082 0.918 30 H 0.040 0.960 31 H 0.076 0.924 32 H 0.217 0.783 33 H 0.184 0.816 34 H 0.258 0.742 35 H 0.252 0.748 36 H 0.085 0.915 37 H 0.094 0.906 38 H 0.094 0.906 39 H 0.086 0.914 40 H 0.102 0.898 41 H 0.060 0.940 42 H 0.121 0.879 43 H 0.112 0.888 44 H 0.113 0.887 45 H 0.117 0.883 46 H 0.118 0.882 47 H 0.089 0.911 48 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 22.394 -21.279 -5.199 31.326 hybrid contribution 0.668 1.543 -0.177 1.691 sum 23.062 -19.736 -5.377 30.827 Atomic orbital electron populations 1.69994 1.07203 1.28750 1.49960 1.25732 0.95836 1.02692 0.93893 0.85345 0.78344 0.78157 0.78539 1.19779 1.19699 1.19788 1.21412 0.93403 0.91012 1.52807 0.92939 1.19332 0.85677 0.81507 0.98104 1.48810 1.23936 1.20372 1.19565 1.23153 1.00513 0.88824 0.96735 1.21685 1.02204 1.06459 1.02074 1.19070 0.90867 0.92970 0.94170 1.41360 1.30440 1.25313 1.31617 1.15753 0.80444 0.79672 0.82767 1.90846 1.65657 1.62959 1.28184 1.44722 1.32111 1.27490 1.32550 1.21920 0.94266 0.83800 0.94985 0.89401 1.23168 0.96493 0.98965 1.00607 1.22725 0.98644 0.93937 0.92344 1.63546 1.09927 1.48436 1.03773 1.21870 0.89283 0.96759 0.96499 1.22231 0.89131 1.01492 1.04237 1.23114 1.00029 1.00439 0.98671 1.23013 1.00866 1.01241 0.96035 1.23183 0.94324 0.95668 0.95108 1.77237 1.04942 1.18165 1.17542 0.91848 0.96049 0.92375 0.78277 0.81628 0.74166 0.74840 0.91519 0.90565 0.90596 0.91359 0.89775 0.93977 0.87852 0.88790 0.88668 0.88260 0.88243 0.91147 0.88857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.23 13.29 21.44 0.28 -51.95 16 2 C 0.02 1.04 5.46 84.65 0.46 1.50 16 3 Si 0.97 43.63 29.54 68.60 2.03 45.65 16 4 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 5 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 6 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 7 C -0.55 -31.08 9.24 25.60 0.24 -30.84 16 8 H 0.05 3.09 7.81 -2.91 -0.02 3.07 16 9 C 0.27 14.24 6.26 85.63 0.54 14.78 16 10 N -0.34 -16.35 3.67 -351.84 -1.29 -17.64 16 11 C 0.06 2.25 11.44 83.52 0.96 3.21 16 12 C -0.29 -11.68 9.61 22.11 0.21 -11.47 16 13 C 0.28 11.44 8.11 133.31 1.08 12.52 16 14 N -0.64 -18.95 5.46 -321.22 -1.75 -20.70 16 15 C 0.71 19.84 8.53 179.05 1.53 21.36 16 16 O -0.60 -21.11 13.11 -4.01 -0.05 -21.16 16 17 N -0.71 -12.48 5.20 -451.20 -2.35 -14.83 16 18 C 0.16 2.60 3.42 46.38 0.16 2.76 16 19 H 0.09 1.92 7.54 -2.39 -0.02 1.90 16 20 C -0.15 -2.39 6.64 31.78 0.21 -2.18 16 21 C 0.05 0.68 6.41 86.65 0.56 1.23 16 22 N -0.53 -6.77 5.16 -885.54 -4.57 -11.34 16 23 C 0.08 0.85 4.81 86.30 0.42 1.26 16 24 C -0.15 -1.56 5.26 -10.79 -0.06 -1.62 16 25 C -0.19 -1.68 10.08 30.60 0.31 -1.37 16 26 C -0.17 -1.45 10.25 30.60 0.31 -1.14 16 27 C 0.05 0.53 6.33 86.78 0.55 1.08 16 28 N -0.35 -16.24 12.42 -54.44 -0.68 -16.92 16 29 H 0.27 14.45 8.31 -92.71 -0.77 13.68 16 30 H 0.02 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.06 2.97 8.07 -2.39 -0.02 2.95 16 32 H 0.20 6.34 8.06 -2.91 -0.02 6.31 16 33 H 0.17 6.47 5.91 -2.91 -0.02 6.45 16 34 H 0.42 9.80 8.84 -92.71 -0.82 8.98 16 35 H 0.41 4.48 8.58 -92.70 -0.80 3.69 16 36 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 37 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 38 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 39 H 0.07 0.80 7.21 -2.39 -0.02 0.78 16 40 H 0.08 0.76 8.08 -2.39 -0.02 0.74 16 41 H 0.04 0.40 7.72 -2.39 -0.02 0.38 16 42 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 43 H 0.09 0.81 8.03 -2.39 -0.02 0.79 16 44 H 0.09 0.82 8.14 -2.38 -0.02 0.80 16 45 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 46 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 47 H 0.07 0.58 7.67 -2.39 -0.02 0.56 16 48 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 Total: -1.00 -70.43 396.11 -1.55 -71.98 By element: Atomic # 1 Polarization: 26.46 SS G_CDS: -0.63 Total: 25.82 kcal Atomic # 6 Polarization: 3.62 SS G_CDS: 7.47 Total: 11.08 kcal Atomic # 7 Polarization: -123.02 SS G_CDS: -10.35 Total: -133.38 kcal Atomic # 8 Polarization: -21.11 SS G_CDS: -0.05 Total: -21.16 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.65 kcal Total: -70.43 -1.55 -71.98 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610326065.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.399 kcal (2) G-P(sol) polarization free energy of solvation -70.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.976 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds