Wall clock time and date at job start Tue Mar 31 2020 18:16:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86806 * 120.00058 * 2 1 4 4 H 1.48499 * 109.47075 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46910 * 300.00053 * 3 2 1 6 6 H 1.48498 * 109.47186 * 60.00225 * 3 2 1 7 7 C 1.37875 * 120.00017 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00272 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99906 * 359.97438 * 7 2 1 10 10 N 1.46499 * 109.47095 * 180.02562 * 9 7 2 11 11 C 1.34963 * 125.97606 * 124.98135 * 10 9 7 12 12 C 1.35250 * 107.85846 * 179.79939 * 11 10 9 13 13 C 1.40393 * 107.86428 * 0.37373 * 12 11 10 14 14 N 1.40200 * 125.97039 * 179.88933 * 13 12 11 15 15 C 1.34777 * 119.99970 * 359.70966 * 14 13 12 16 16 O 1.21593 * 119.99953 * 0.02562 * 15 14 13 17 17 N 1.34777 * 119.99726 * 180.27511 * 15 14 13 18 18 C 1.46505 * 119.99724 * 179.72746 * 17 15 14 19 19 H 1.09006 * 110.28411 * 324.32515 * 18 17 15 20 20 C 1.54259 * 110.32476 * 86.45580 * 18 17 15 21 21 C 1.54382 * 105.06087 * 118.89502 * 20 18 17 22 22 N 1.48564 * 104.59336 * 23.85375 * 21 20 18 23 23 C 1.46895 * 110.99989 * 200.96010 * 22 21 20 24 24 C 1.52997 * 109.47106 * 290.12768 * 23 22 21 25 25 C 1.53006 * 117.49779 * 243.62128 * 24 23 22 26 26 C 1.52998 * 59.99905 * 252.50915 * 25 24 23 27 27 C 1.48567 * 104.22207 * 320.51844 * 22 21 20 28 28 N 1.31201 * 108.05829 * 359.62509 * 13 12 11 29 29 H 0.97005 * 120.00139 * 359.97438 * 1 2 3 30 30 H 1.08995 * 109.47218 * 60.00148 * 9 7 2 31 31 H 1.09005 * 109.46943 * 299.99924 * 9 7 2 32 32 H 1.08004 * 126.07213 * 0.05648 * 11 10 9 33 33 H 1.08000 * 126.06412 * 180.24511 * 12 11 10 34 34 H 0.97000 * 120.00293 * 179.71658 * 14 13 12 35 35 H 0.97000 * 120.00483 * 359.73178 * 17 15 14 36 36 H 1.08996 * 110.32370 * 237.79277 * 20 18 17 37 37 H 1.08997 * 110.31957 * 359.97438 * 20 18 17 38 38 H 1.09003 * 110.40947 * 142.62892 * 21 20 18 39 39 H 1.08994 * 110.41035 * 264.95758 * 21 20 18 40 40 H 1.08996 * 109.47181 * 50.12482 * 23 22 21 41 41 H 1.08998 * 109.47415 * 170.12675 * 23 22 21 42 42 H 1.09006 * 115.55154 * 29.32737 * 24 23 22 43 43 H 1.08991 * 117.49891 * 0.02562 * 25 24 23 44 44 H 1.09005 * 117.49673 * 145.01711 * 25 24 23 45 45 H 1.09002 * 117.49904 * 252.51130 * 26 25 24 46 46 H 1.08997 * 117.52005 * 107.48459 * 26 25 24 47 47 H 1.09006 * 110.40766 * 280.70358 * 27 22 21 48 48 H 1.08993 * 110.41129 * 158.26669 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8905 2.3965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 7 2.2030 -3.6126 -0.0005 11 6 2.2422 -4.6221 0.8944 12 6 3.2580 -5.4449 0.5472 13 6 3.8694 -4.9141 -0.5998 14 7 4.9655 -5.4650 -1.2785 15 6 5.5302 -6.6049 -0.8332 16 8 5.0887 -7.1557 0.1569 17 7 6.5873 -7.1315 -1.4825 18 6 7.2049 -8.3674 -0.9951 19 1 7.1834 -8.3964 0.0944 20 6 6.4773 -9.5962 -1.5783 21 6 7.5507 -10.3478 -2.3947 22 7 8.8419 -9.9261 -1.7931 23 6 9.9535 -10.1398 -2.7293 24 6 10.1985 -11.6409 -2.8959 25 6 11.5474 -12.1925 -2.4298 26 6 11.2438 -12.0762 -3.9248 27 6 8.6566 -8.4798 -1.5080 28 7 3.2323 -3.8154 -0.9287 29 1 -0.4850 0.8401 0.0004 30 1 0.6240 -2.5567 -0.8903 31 1 0.6247 -2.5570 0.8897 32 1 1.5777 -4.7524 1.7357 33 1 3.5486 -6.3486 1.0622 34 1 5.3175 -5.0258 -2.0685 35 1 6.9393 -6.6923 -2.2725 36 1 6.1002 -10.2293 -0.7752 37 1 5.6605 -9.2798 -2.2269 38 1 7.4188 -11.4252 -2.2950 39 1 7.5044 -10.0554 -3.4436 40 1 9.7034 -9.7031 -3.6961 41 1 10.8540 -9.6659 -2.3386 42 1 9.3228 -12.2772 -2.7679 43 1 12.2600 -11.4862 -2.0042 44 1 11.5593 -13.1920 -1.9949 45 1 11.0559 -12.9991 -4.4735 46 1 11.7566 -11.2933 -4.4835 47 1 8.7849 -7.8935 -2.4179 48 1 9.3575 -8.1508 -0.7408 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610326066.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:16:59 Heat of formation + Delta-G solvation = 92.589790 kcal Electronic energy + Delta-G solvation = -27332.966917 eV Core-core repulsion = 23425.965502 eV Total energy + Delta-G solvation = -3907.001415 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.79578 -40.04197 -39.05610 -37.43204 -34.79212 -34.41349 -33.31736 -31.39861 -30.61575 -29.28427 -28.86835 -26.68983 -26.02508 -23.26014 -22.82498 -22.27681 -21.96562 -21.19577 -20.50242 -20.04890 -19.76348 -18.02458 -17.09286 -16.57489 -16.52130 -16.45781 -15.71552 -15.27014 -15.03135 -15.00167 -14.58302 -14.29288 -14.13161 -13.90427 -13.82333 -13.47594 -12.99089 -12.76364 -12.41368 -12.23829 -12.13751 -12.12472 -11.93290 -11.73532 -11.70850 -11.56552 -11.06371 -11.04589 -10.87304 -10.73420 -10.44444 -10.41406 -10.25545 -10.06487 -9.67485 -9.47285 -9.26177 -8.94490 -8.62960 -8.08500 -7.39865 -6.23576 -4.28452 2.33963 2.67598 3.12129 3.22508 3.23293 3.30011 3.36452 3.52070 3.75021 3.84439 4.11084 4.20273 4.28930 4.38890 4.47483 4.52380 4.59180 4.75802 4.84433 4.94313 5.02284 5.11620 5.12942 5.14575 5.20975 5.24431 5.45918 5.47994 5.51300 5.59649 5.67486 5.76004 5.79112 5.83405 5.86849 6.14702 6.26701 6.44416 6.53256 6.56297 6.62105 6.88971 7.02005 7.11769 7.51286 7.70802 7.83396 7.98479 8.08450 8.59620 8.68108 8.82345 9.37190 10.85119 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.030344 B = 0.001691 C = 0.001634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 922.528957 B =16550.698848 C =17131.630949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.062 3.938 3 Si 0.907 3.093 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.282 1.282 7 C -0.527 4.527 8 H 0.069 0.931 9 C 0.258 3.742 10 N -0.320 5.320 11 C 0.051 3.949 12 C -0.286 4.286 13 C 0.275 3.725 14 N -0.644 5.644 15 C 0.714 3.286 16 O -0.564 6.564 17 N -0.740 5.740 18 C 0.164 3.836 19 H 0.103 0.897 20 C -0.136 4.136 21 C 0.032 3.968 22 N -0.504 5.504 23 C 0.076 3.924 24 C -0.146 4.146 25 C -0.174 4.174 26 C -0.183 4.183 27 C 0.028 3.972 28 N -0.308 5.308 29 H 0.266 0.734 30 H 0.045 0.955 31 H 0.057 0.943 32 H 0.167 0.833 33 H 0.161 0.839 34 H 0.406 0.594 35 H 0.395 0.605 36 H 0.081 0.919 37 H 0.076 0.924 38 H 0.083 0.917 39 H 0.045 0.955 40 H 0.041 0.959 41 H 0.077 0.923 42 H 0.108 0.892 43 H 0.094 0.906 44 H 0.093 0.907 45 H 0.094 0.906 46 H 0.093 0.907 47 H 0.051 0.949 48 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.722 -22.483 -6.786 30.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.141 4.141 3 Si 0.735 3.265 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.208 1.208 7 C -0.566 4.566 8 H 0.087 0.913 9 C 0.141 3.859 10 N -0.102 5.102 11 C -0.099 4.099 12 C -0.317 4.317 13 C 0.021 3.979 14 N -0.294 5.294 15 C 0.413 3.587 16 O -0.439 6.439 17 N -0.397 5.397 18 C 0.058 3.942 19 H 0.122 0.878 20 C -0.176 4.176 21 C -0.096 4.096 22 N -0.228 5.228 23 C -0.053 4.053 24 C -0.164 4.164 25 C -0.211 4.211 26 C -0.221 4.221 27 C -0.101 4.101 28 N -0.140 5.140 29 H 0.076 0.924 30 H 0.062 0.938 31 H 0.075 0.925 32 H 0.185 0.815 33 H 0.178 0.822 34 H 0.241 0.759 35 H 0.229 0.771 36 H 0.100 0.900 37 H 0.095 0.905 38 H 0.101 0.899 39 H 0.063 0.937 40 H 0.059 0.941 41 H 0.095 0.905 42 H 0.126 0.874 43 H 0.112 0.888 44 H 0.111 0.889 45 H 0.112 0.888 46 H 0.111 0.889 47 H 0.069 0.931 48 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 19.137 -22.113 -6.202 29.894 hybrid contribution 0.590 1.202 -1.062 1.709 sum 19.727 -20.910 -7.264 29.651 Atomic orbital electron populations 1.69929 1.06034 1.27485 1.49925 1.24946 0.94976 0.99537 0.94645 0.86279 0.80052 0.82504 0.77699 1.19592 1.20726 1.20765 1.21309 0.94047 0.89406 1.51824 0.91251 1.19735 0.85628 0.81326 0.99242 1.49046 1.23251 1.19790 1.18151 1.22559 1.00373 0.90210 0.96770 1.21513 1.02038 1.06319 1.01878 1.18776 0.90653 0.94049 0.94380 1.41391 1.31547 1.25055 1.31368 1.15611 0.80116 0.80051 0.82895 1.90874 1.64191 1.62344 1.26501 1.45176 1.33692 1.28144 1.32673 1.21470 0.90074 0.82200 1.00469 0.87848 1.22799 0.97698 0.96746 1.00323 1.23180 0.88957 1.00904 0.96562 1.65363 1.03199 1.14198 1.40044 1.21846 0.94913 0.94278 0.94227 1.22204 0.93956 0.96123 1.04150 1.22998 0.98744 1.02615 0.96727 1.22985 1.03458 1.03200 0.92426 1.23344 0.96496 0.89505 1.00749 1.77314 1.03822 1.16390 1.16424 0.92403 0.93758 0.92538 0.81537 0.82170 0.75948 0.77102 0.89993 0.90521 0.89903 0.93656 0.94073 0.90458 0.87440 0.88767 0.88857 0.88770 0.88885 0.93103 0.88947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.37 13.29 55.43 0.74 -24.63 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 3 Si 0.91 21.38 29.54 -169.99 -5.02 16.36 16 4 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 5 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 6 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.53 -14.73 9.24 -34.44 -0.32 -15.05 16 8 H 0.07 2.01 7.81 -52.49 -0.41 1.60 16 9 C 0.26 6.59 6.26 -5.20 -0.03 6.56 16 10 N -0.32 -7.50 3.67 -62.56 -0.23 -7.73 16 11 C 0.05 1.03 11.44 -17.24 -0.20 0.83 16 12 C -0.29 -5.75 9.61 -39.84 -0.38 -6.14 16 13 C 0.28 5.56 8.11 -154.37 -1.25 4.31 16 14 N -0.64 -9.90 5.46 -15.51 -0.08 -9.99 16 15 C 0.71 10.25 8.53 -86.92 -0.74 9.51 16 16 O -0.56 -10.02 13.17 5.28 0.07 -9.95 16 17 N -0.74 -7.10 5.05 -57.32 -0.29 -7.39 16 18 C 0.16 1.46 3.36 -66.55 -0.22 1.24 16 19 H 0.10 1.13 7.64 -51.93 -0.40 0.73 16 20 C -0.14 -1.16 6.78 -25.35 -0.17 -1.34 16 21 C 0.03 0.22 5.89 -2.18 -0.01 0.21 16 22 N -0.50 -3.63 5.37 -229.97 -1.24 -4.87 16 23 C 0.08 0.46 5.09 -3.83 -0.02 0.44 16 24 C -0.15 -0.87 5.73 -90.62 -0.52 -1.39 16 25 C -0.17 -0.95 10.18 -26.73 -0.27 -1.22 16 26 C -0.18 -0.93 10.25 -26.73 -0.27 -1.20 16 27 C 0.03 0.19 6.19 -2.18 -0.01 0.18 16 28 N -0.31 -7.13 12.42 31.44 0.39 -6.74 16 29 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 30 H 0.04 1.19 8.14 -51.93 -0.42 0.77 16 31 H 0.06 1.41 8.07 -51.93 -0.42 1.00 16 32 H 0.17 2.75 8.06 -52.48 -0.42 2.33 16 33 H 0.16 3.16 5.91 -52.49 -0.31 2.85 16 34 H 0.41 5.01 8.84 -40.82 -0.36 4.65 16 35 H 0.39 2.68 8.36 -40.82 -0.34 2.34 16 36 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.08 0.72 7.95 -51.93 -0.41 0.30 16 38 H 0.08 0.55 7.44 -51.93 -0.39 0.16 16 39 H 0.05 0.30 7.82 -51.93 -0.41 -0.11 16 40 H 0.04 0.24 7.88 -51.93 -0.41 -0.17 16 41 H 0.08 0.45 7.86 -51.93 -0.41 0.04 16 42 H 0.11 0.68 7.08 -51.93 -0.37 0.32 16 43 H 0.09 0.49 8.03 -51.93 -0.42 0.07 16 44 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.09 0.43 8.14 -51.93 -0.42 0.00 16 46 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 47 H 0.05 0.29 7.59 -51.93 -0.39 -0.10 16 48 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 394.88 15.07 5.95 5.95 Total: -1.00 -32.77 394.88 -11.77 -44.54 By element: Atomic # 1 Polarization: 13.43 SS G_CDS: -7.53 Total: 5.90 kcal Atomic # 6 Polarization: 3.07 SS G_CDS: -4.53 Total: -1.45 kcal Atomic # 7 Polarization: -60.64 SS G_CDS: -0.71 Total: -61.35 kcal Atomic # 8 Polarization: -10.02 SS G_CDS: 0.07 Total: -9.95 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -32.77 -11.77 -44.54 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610326066.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.130 kcal (2) G-P(sol) polarization free energy of solvation -32.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.540 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds