Wall clock time and date at job start Tue Mar 31 2020 18:16:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86806 * 120.00058 * 2 1 4 4 H 1.48499 * 109.47075 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46910 * 300.00053 * 3 2 1 6 6 H 1.48498 * 109.47186 * 60.00225 * 3 2 1 7 7 C 1.37875 * 120.00017 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00272 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99906 * 359.97438 * 7 2 1 10 10 N 1.46499 * 109.47095 * 180.02562 * 9 7 2 11 11 C 1.34963 * 125.97606 * 124.98135 * 10 9 7 12 12 C 1.35250 * 107.85846 * 179.79939 * 11 10 9 13 13 C 1.40393 * 107.86428 * 0.37373 * 12 11 10 14 14 N 1.40200 * 125.97039 * 179.88933 * 13 12 11 15 15 C 1.34777 * 119.99970 * 359.70966 * 14 13 12 16 16 O 1.21593 * 119.99953 * 0.02562 * 15 14 13 17 17 N 1.34777 * 119.99726 * 180.27511 * 15 14 13 18 18 C 1.46505 * 119.99724 * 179.72746 * 17 15 14 19 19 H 1.09006 * 110.28411 * 324.32515 * 18 17 15 20 20 C 1.54259 * 110.32476 * 86.45580 * 18 17 15 21 21 C 1.54382 * 105.06087 * 118.89502 * 20 18 17 22 22 N 1.48564 * 104.59336 * 23.85375 * 21 20 18 23 23 C 1.46895 * 110.99989 * 200.96010 * 22 21 20 24 24 C 1.52997 * 109.47106 * 290.12768 * 23 22 21 25 25 C 1.53006 * 117.49779 * 243.62128 * 24 23 22 26 26 C 1.52998 * 59.99905 * 252.50915 * 25 24 23 27 27 C 1.48567 * 104.22207 * 320.51844 * 22 21 20 28 28 N 1.31201 * 108.05829 * 359.62509 * 13 12 11 29 29 H 0.97005 * 120.00139 * 359.97438 * 1 2 3 30 30 H 1.08995 * 109.47218 * 60.00148 * 9 7 2 31 31 H 1.09005 * 109.46943 * 299.99924 * 9 7 2 32 32 H 1.08004 * 126.07213 * 0.05648 * 11 10 9 33 33 H 1.08000 * 126.06412 * 180.24511 * 12 11 10 34 34 H 0.97000 * 120.00293 * 179.71658 * 14 13 12 35 35 H 0.97000 * 120.00483 * 359.73178 * 17 15 14 36 36 H 1.08996 * 110.32370 * 237.79277 * 20 18 17 37 37 H 1.08997 * 110.31957 * 359.97438 * 20 18 17 38 38 H 1.09003 * 110.40947 * 142.62892 * 21 20 18 39 39 H 1.08994 * 110.41035 * 264.95758 * 21 20 18 40 40 H 1.08996 * 109.47181 * 50.12482 * 23 22 21 41 41 H 1.08998 * 109.47415 * 170.12675 * 23 22 21 42 42 H 1.09006 * 115.55154 * 29.32737 * 24 23 22 43 43 H 1.08991 * 117.49891 * 0.02562 * 25 24 23 44 44 H 1.09005 * 117.49673 * 145.01711 * 25 24 23 45 45 H 1.09002 * 117.49904 * 252.51130 * 26 25 24 46 46 H 1.08997 * 117.52005 * 107.48459 * 26 25 24 47 47 H 1.09006 * 110.40766 * 280.70358 * 27 22 21 48 48 H 1.08993 * 110.41129 * 158.26669 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8905 2.3965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 7 2.2030 -3.6126 -0.0005 11 6 2.2422 -4.6221 0.8944 12 6 3.2580 -5.4449 0.5472 13 6 3.8694 -4.9141 -0.5998 14 7 4.9655 -5.4650 -1.2785 15 6 5.5302 -6.6049 -0.8332 16 8 5.0887 -7.1557 0.1569 17 7 6.5873 -7.1315 -1.4825 18 6 7.2049 -8.3674 -0.9951 19 1 7.1834 -8.3964 0.0944 20 6 6.4773 -9.5962 -1.5783 21 6 7.5507 -10.3478 -2.3947 22 7 8.8419 -9.9261 -1.7931 23 6 9.9535 -10.1398 -2.7293 24 6 10.1985 -11.6409 -2.8959 25 6 11.5474 -12.1925 -2.4298 26 6 11.2438 -12.0762 -3.9248 27 6 8.6566 -8.4798 -1.5080 28 7 3.2323 -3.8154 -0.9287 29 1 -0.4850 0.8401 0.0004 30 1 0.6240 -2.5567 -0.8903 31 1 0.6247 -2.5570 0.8897 32 1 1.5777 -4.7524 1.7357 33 1 3.5486 -6.3486 1.0622 34 1 5.3175 -5.0258 -2.0685 35 1 6.9393 -6.6923 -2.2725 36 1 6.1002 -10.2293 -0.7752 37 1 5.6605 -9.2798 -2.2269 38 1 7.4188 -11.4252 -2.2950 39 1 7.5044 -10.0554 -3.4436 40 1 9.7034 -9.7031 -3.6961 41 1 10.8540 -9.6659 -2.3386 42 1 9.3228 -12.2772 -2.7679 43 1 12.2600 -11.4862 -2.0042 44 1 11.5593 -13.1920 -1.9949 45 1 11.0559 -12.9991 -4.4735 46 1 11.7566 -11.2933 -4.4835 47 1 8.7849 -7.8935 -2.4179 48 1 9.3575 -8.1508 -0.7408 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610326066.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:16:58 Heat of formation + Delta-G solvation = 70.907938 kcal Electronic energy + Delta-G solvation = -27333.907113 eV Core-core repulsion = 23425.965502 eV Total energy + Delta-G solvation = -3907.941611 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.22811 -41.16022 -39.90965 -37.97193 -36.21493 -35.42460 -35.17123 -32.82939 -31.68655 -30.90544 -29.59629 -28.46757 -26.71674 -25.04335 -23.43516 -23.21511 -22.69157 -22.10706 -21.78524 -21.20108 -20.71428 -19.21708 -18.68377 -18.23148 -17.58722 -17.18408 -16.89464 -16.49207 -16.29036 -15.97556 -15.70409 -15.49398 -15.35851 -14.77531 -14.70270 -14.43034 -14.25761 -14.02570 -13.78814 -13.68691 -13.54874 -12.99864 -12.86951 -12.72067 -12.65983 -12.38151 -12.31606 -12.29644 -12.07371 -12.03389 -11.73789 -11.59795 -11.37713 -11.16296 -11.10312 -10.86722 -10.71718 -10.22037 -9.71359 -9.46435 -9.04392 -8.32174 -6.46372 1.08048 1.13123 1.37743 1.39104 1.52264 1.71542 2.09778 2.36358 2.41837 2.77610 2.99341 3.06083 3.29848 3.49429 3.66183 3.97252 3.98901 4.05109 4.07325 4.22120 4.27753 4.30072 4.37358 4.47516 4.61250 4.67219 4.72043 4.77275 4.83704 4.85739 4.89648 4.95972 4.98294 5.02053 5.04981 5.08064 5.16626 5.18330 5.29583 5.34669 5.46026 5.57805 5.77022 5.85136 5.88751 5.98584 6.03598 6.30607 6.64756 6.76945 7.16118 7.23727 7.44277 8.75425 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.030344 B = 0.001691 C = 0.001634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 922.528957 B =16550.698848 C =17131.630949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.019 3.981 3 Si 0.972 3.028 4 H -0.275 1.275 5 H -0.273 1.273 6 H -0.270 1.270 7 C -0.547 4.547 8 H 0.052 0.948 9 C 0.272 3.728 10 N -0.345 5.345 11 C 0.056 3.944 12 C -0.293 4.293 13 C 0.285 3.715 14 N -0.636 5.636 15 C 0.713 3.287 16 O -0.598 6.598 17 N -0.716 5.716 18 C 0.162 3.838 19 H 0.082 0.918 20 C -0.134 4.134 21 C 0.039 3.961 22 N -0.515 5.515 23 C 0.078 3.922 24 C -0.154 4.154 25 C -0.179 4.179 26 C -0.177 4.177 27 C 0.036 3.964 28 N -0.348 5.348 29 H 0.272 0.728 30 H 0.022 0.978 31 H 0.058 0.942 32 H 0.200 0.800 33 H 0.167 0.833 34 H 0.421 0.579 35 H 0.413 0.587 36 H 0.070 0.930 37 H 0.069 0.931 38 H 0.086 0.914 39 H 0.054 0.946 40 H 0.047 0.953 41 H 0.081 0.919 42 H 0.101 0.899 43 H 0.096 0.904 44 H 0.093 0.907 45 H 0.098 0.902 46 H 0.099 0.901 47 H 0.069 0.931 48 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.541 -22.717 -7.447 32.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.182 4.182 3 Si 0.797 3.203 4 H -0.199 1.199 5 H -0.198 1.198 6 H -0.195 1.195 7 C -0.585 4.585 8 H 0.071 0.929 9 C 0.154 3.846 10 N -0.127 5.127 11 C -0.092 4.092 12 C -0.324 4.324 13 C 0.029 3.971 14 N -0.288 5.288 15 C 0.413 3.587 16 O -0.476 6.476 17 N -0.373 5.373 18 C 0.056 3.944 19 H 0.101 0.899 20 C -0.173 4.173 21 C -0.088 4.088 22 N -0.239 5.239 23 C -0.050 4.050 24 C -0.173 4.173 25 C -0.216 4.216 26 C -0.214 4.214 27 C -0.093 4.093 28 N -0.179 5.179 29 H 0.081 0.919 30 H 0.039 0.961 31 H 0.076 0.924 32 H 0.217 0.783 33 H 0.184 0.816 34 H 0.258 0.742 35 H 0.250 0.750 36 H 0.089 0.911 37 H 0.088 0.912 38 H 0.104 0.896 39 H 0.072 0.928 40 H 0.065 0.935 41 H 0.099 0.901 42 H 0.120 0.880 43 H 0.115 0.885 44 H 0.112 0.888 45 H 0.117 0.883 46 H 0.117 0.883 47 H 0.087 0.913 48 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 21.005 -22.375 -6.906 31.457 hybrid contribution 0.094 1.119 -0.859 1.414 sum 21.098 -21.256 -7.765 30.940 Atomic orbital electron populations 1.70003 1.07210 1.28682 1.50054 1.25737 0.95835 1.02711 0.93899 0.85289 0.78383 0.78373 0.78283 1.19931 1.19845 1.19541 1.21442 0.93402 0.91002 1.52688 0.92947 1.19335 0.85688 0.81529 0.98096 1.48807 1.23906 1.20377 1.19611 1.23153 1.00517 0.88853 0.96724 1.21685 1.02150 1.06492 1.02072 1.19072 0.90862 0.92961 0.94166 1.41382 1.30438 1.25375 1.31608 1.15763 0.80709 0.79531 0.82709 1.90847 1.65413 1.63139 1.28173 1.44998 1.31862 1.27929 1.32485 1.21525 0.91600 0.81773 0.99457 0.89941 1.22728 0.97989 0.96550 1.00061 1.23110 0.88290 1.00862 0.96571 1.65369 1.03519 1.14279 1.40747 1.21849 0.94539 0.94401 0.94191 1.22200 0.93975 0.96031 1.05063 1.23056 0.98541 1.02732 0.97253 1.23039 1.02670 1.03521 0.92216 1.23284 0.94632 0.89786 1.01568 1.77233 1.04917 1.18191 1.17595 0.91858 0.96056 0.92378 0.78287 0.81607 0.74221 0.75004 0.91071 0.91221 0.89601 0.92802 0.93487 0.90058 0.88050 0.88541 0.88806 0.88319 0.88254 0.91312 0.88539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.25 13.29 21.45 0.28 -51.97 16 2 C 0.02 1.02 5.46 84.65 0.46 1.48 16 3 Si 0.97 43.66 29.54 68.60 2.03 45.69 16 4 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 5 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 6 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 7 C -0.55 -31.05 9.24 25.60 0.24 -30.81 16 8 H 0.05 3.09 7.81 -2.91 -0.02 3.07 16 9 C 0.27 14.24 6.26 85.63 0.54 14.77 16 10 N -0.34 -16.37 3.67 -351.84 -1.29 -17.66 16 11 C 0.06 2.24 11.44 83.52 0.96 3.20 16 12 C -0.29 -11.67 9.61 22.11 0.21 -11.46 16 13 C 0.29 11.46 8.11 133.31 1.08 12.54 16 14 N -0.64 -19.00 5.46 -321.24 -1.75 -20.76 16 15 C 0.71 19.79 8.53 179.05 1.53 21.32 16 16 O -0.60 -21.02 13.17 -4.01 -0.05 -21.08 16 17 N -0.72 -12.56 5.05 -453.52 -2.29 -14.85 16 18 C 0.16 2.70 3.36 45.88 0.15 2.85 16 19 H 0.08 1.78 7.64 -2.38 -0.02 1.76 16 20 C -0.13 -2.17 6.78 31.49 0.21 -1.96 16 21 C 0.04 0.49 5.89 86.45 0.51 1.00 16 22 N -0.51 -6.47 5.37 -881.50 -4.73 -11.20 16 23 C 0.08 0.79 5.09 86.30 0.44 1.22 16 24 C -0.15 -1.59 5.73 -10.79 -0.06 -1.65 16 25 C -0.18 -1.71 10.18 30.60 0.31 -1.40 16 26 C -0.18 -1.48 10.25 30.59 0.31 -1.17 16 27 C 0.04 0.41 6.19 86.45 0.54 0.95 16 28 N -0.35 -16.29 12.42 -54.44 -0.68 -16.96 16 29 H 0.27 14.41 8.31 -92.70 -0.77 13.63 16 30 H 0.02 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.06 2.97 8.07 -2.38 -0.02 2.95 16 32 H 0.20 6.34 8.06 -2.91 -0.02 6.31 16 33 H 0.17 6.48 5.91 -2.91 -0.02 6.46 16 34 H 0.42 9.84 8.84 -92.71 -0.82 9.02 16 35 H 0.41 4.54 8.36 -92.71 -0.77 3.77 16 36 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 37 H 0.07 1.23 7.95 -2.39 -0.02 1.21 16 38 H 0.09 1.03 7.44 -2.39 -0.02 1.01 16 39 H 0.05 0.59 7.82 -2.39 -0.02 0.57 16 40 H 0.05 0.43 7.88 -2.39 -0.02 0.41 16 41 H 0.08 0.76 7.86 -2.39 -0.02 0.74 16 42 H 0.10 1.17 7.08 -2.38 -0.02 1.15 16 43 H 0.10 0.86 8.03 -2.39 -0.02 0.85 16 44 H 0.09 0.87 8.14 -2.38 -0.02 0.85 16 45 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 46 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 47 H 0.07 0.57 7.59 -2.38 -0.02 0.55 16 48 H 0.10 1.08 8.14 -2.39 -0.02 1.07 16 Total: -1.00 -70.65 394.88 -1.67 -72.32 By element: Atomic # 1 Polarization: 26.18 SS G_CDS: -0.61 Total: 25.57 kcal Atomic # 6 Polarization: 3.47 SS G_CDS: 7.42 Total: 10.90 kcal Atomic # 7 Polarization: -122.94 SS G_CDS: -10.46 Total: -133.40 kcal Atomic # 8 Polarization: -21.02 SS G_CDS: -0.05 Total: -21.08 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.69 kcal Total: -70.65 -1.67 -72.32 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610326066.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.224 kcal (2) G-P(sol) polarization free energy of solvation -70.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.316 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds