Wall clock time and date at job start Tue Mar 31 2020 17:55:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86795 * 119.99998 * 2 1 4 4 H 1.48507 * 109.47208 * 274.06835 * 3 2 1 5 5 H 1.48503 * 109.47265 * 34.06300 * 3 2 1 6 6 H 1.48493 * 109.47194 * 154.06868 * 3 2 1 7 7 C 1.38811 * 120.00092 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00064 * 197.50306 * 7 2 1 9 9 N 1.36945 * 119.99517 * 17.49879 * 7 2 1 10 10 C 1.46925 * 120.62652 * 207.96014 * 9 7 2 11 11 C 1.53192 * 108.77840 * 233.63563 * 10 9 7 12 12 C 1.53047 * 109.30974 * 305.36754 * 11 10 9 13 13 N 1.46497 * 109.45871 * 181.38285 * 12 11 10 14 14 C 1.34785 * 119.99952 * 154.97581 * 13 12 11 15 15 O 1.21585 * 119.99436 * 359.97438 * 14 13 12 16 16 N 1.34774 * 119.99990 * 180.02562 * 14 13 12 17 17 C 1.46502 * 119.99876 * 179.97438 * 16 14 13 18 18 H 1.08996 * 109.37363 * 325.13307 * 17 16 14 19 19 C 1.53026 * 109.42178 * 205.28052 * 17 16 14 20 20 C 1.53385 * 109.72116 * 168.19420 * 19 17 16 21 21 C 1.50886 * 108.19451 * 50.53972 * 20 19 17 22 22 C 1.34573 * 128.32755 * 163.32435 * 21 20 19 23 23 N 1.35197 * 107.62059 * 180.19436 * 22 21 20 24 24 H 0.96996 * 126.00650 * 180.19762 * 23 22 21 25 25 N 1.40316 * 107.98790 * 359.93532 * 23 22 21 26 26 C 1.30124 * 108.12699 * 0.02562 * 25 23 22 27 27 C 1.50945 * 128.28872 * 180.16276 * 26 25 23 28 28 C 1.53042 * 109.52757 * 61.36940 * 12 11 10 29 29 C 1.46919 * 120.63384 * 27.99075 * 9 7 2 30 30 H 0.97003 * 119.99580 * 359.97438 * 1 2 3 31 31 H 1.08997 * 109.58741 * 113.84694 * 10 9 7 32 32 H 1.09005 * 109.58694 * 353.42005 * 10 9 7 33 33 H 1.08990 * 109.50258 * 185.41390 * 11 10 9 34 34 H 1.09003 * 109.50026 * 65.30915 * 11 10 9 35 35 H 1.08993 * 109.45848 * 301.35485 * 12 11 10 36 36 H 0.97003 * 120.00140 * 334.97296 * 13 12 11 37 37 H 0.97003 * 120.00103 * 359.97438 * 16 14 13 38 38 H 1.09004 * 109.42655 * 288.26837 * 19 17 16 39 39 H 1.08994 * 109.43116 * 48.16667 * 19 17 16 40 40 H 1.08995 * 109.72106 * 170.21601 * 20 19 17 41 41 H 1.09002 * 109.71886 * 290.82757 * 20 19 17 42 42 H 1.08000 * 126.18963 * 0.17550 * 22 21 20 43 43 H 1.09004 * 109.71625 * 282.90393 * 27 26 25 44 44 H 1.08998 * 109.71583 * 43.54586 * 27 26 25 45 45 H 1.09005 * 109.49585 * 58.57836 * 28 12 11 46 46 H 1.08997 * 109.49607 * 178.67477 * 28 12 11 47 47 H 1.09001 * 109.58399 * 246.15327 * 29 9 7 48 48 H 1.09004 * 109.58479 * 6.57263 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4118 2.0961 -1.3966 5 1 1.4933 2.6263 0.7842 6 1 3.5881 1.4168 0.6122 7 6 2.0104 -1.2021 0.0005 8 1 3.0528 -1.2236 0.2818 9 7 1.3731 -2.3608 -0.3556 10 6 1.8151 -3.6542 0.1833 11 6 2.0771 -4.6111 -0.9839 12 6 0.8272 -4.6907 -1.8635 13 7 1.0628 -5.6303 -2.9624 14 6 0.0222 -6.2504 -3.5536 15 8 -1.1118 -6.0302 -3.1745 16 7 0.2390 -7.1153 -4.5643 17 6 -0.8920 -7.7897 -5.2065 18 1 -1.6604 -7.9960 -4.4615 19 6 -0.4154 -9.1062 -5.8240 20 6 -1.6262 -9.9530 -6.2358 21 6 -2.5477 -9.0880 -7.0599 22 6 -3.5495 -9.4731 -7.8718 23 7 -4.0962 -8.3573 -8.4047 24 1 -4.8406 -8.3278 -9.0259 25 7 -3.4014 -7.2491 -7.8967 26 6 -2.4760 -7.6854 -7.0926 27 6 -1.4715 -6.8842 -6.3004 28 6 0.5148 -3.3057 -2.4350 29 6 0.2349 -2.3342 -1.2842 30 1 -0.4850 0.8401 0.0004 31 1 1.0380 -4.0668 0.8267 32 1 2.7322 -3.5171 0.7563 33 1 2.3128 -5.6021 -0.5962 34 1 2.9152 -4.2426 -1.5755 35 1 -0.0163 -5.0354 -1.2654 36 1 1.9676 -5.8063 -3.2647 37 1 1.1438 -7.2913 -4.8665 38 1 0.1948 -8.8949 -6.7022 39 1 0.1786 -9.6554 -5.0935 40 1 -1.2944 -10.8056 -6.8283 41 1 -2.1488 -10.3046 -5.3461 42 1 -3.8603 -10.4895 -8.0633 43 1 -0.6719 -6.5435 -6.9581 44 1 -1.9639 -6.0256 -5.8438 45 1 1.3679 -2.9497 -3.0126 46 1 -0.3616 -3.3676 -3.0801 47 1 -0.6711 -2.6391 -0.7605 48 1 0.1092 -1.3261 -1.6794 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610720380.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:55:00 Heat of formation + Delta-G solvation = 57.023516 kcal Electronic energy + Delta-G solvation = -28552.221809 eV Core-core repulsion = 24643.678124 eV Total energy + Delta-G solvation = -3908.543685 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.71727 -39.97151 -37.81887 -36.72579 -34.27882 -33.59725 -32.40176 -31.95995 -30.16331 -29.75622 -29.02758 -28.60237 -25.13031 -24.30543 -22.34858 -22.14481 -21.55599 -21.27310 -20.48994 -19.40941 -19.21277 -18.07950 -17.66478 -16.78479 -16.40343 -15.48066 -15.15064 -14.99591 -14.73436 -14.39696 -14.25664 -13.87341 -13.79206 -13.61871 -13.43246 -13.23025 -13.10327 -12.93164 -12.55887 -12.29563 -12.23230 -11.82238 -11.53820 -11.42574 -11.12258 -11.06022 -10.86312 -10.70748 -10.58927 -10.32648 -10.17096 -10.04324 -9.90272 -9.70102 -9.61583 -9.48729 -9.12856 -8.70363 -8.56046 -8.33631 -6.63950 -5.74035 -3.16841 1.64518 2.48420 2.54960 2.87277 3.41039 3.45319 3.47751 3.49322 4.17277 4.40361 4.47577 4.53295 4.56301 4.80483 4.90147 5.04335 5.20444 5.29980 5.34845 5.36788 5.45124 5.48869 5.51985 5.63231 5.71801 5.79161 5.81637 5.90589 5.91149 6.00621 6.15955 6.30070 6.39298 6.44038 6.52602 6.54052 6.66675 6.71259 6.83549 6.97578 7.01732 7.02225 7.19155 7.44178 7.45331 7.74358 7.84254 8.23084 8.49721 8.85294 9.25554 9.89096 10.45916 11.34428 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.022967 B = 0.002170 C = 0.002040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.873936 B =12901.184811 C =13721.956965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.002 3.998 3 Si 0.902 3.098 4 H -0.288 1.288 5 H -0.292 1.292 6 H -0.279 1.279 7 C -0.254 4.254 8 H 0.066 0.934 9 N -0.593 5.593 10 C 0.149 3.851 11 C -0.138 4.138 12 C 0.169 3.831 13 N -0.740 5.740 14 C 0.701 3.299 15 O -0.586 6.586 16 N -0.748 5.748 17 C 0.172 3.828 18 H 0.093 0.907 19 C -0.125 4.125 20 C -0.035 4.035 21 C -0.241 4.241 22 C 0.060 3.940 23 N -0.486 5.486 24 H 0.438 0.562 25 N -0.286 5.286 26 C 0.093 3.907 27 C -0.053 4.053 28 C -0.146 4.146 29 C 0.173 3.827 30 H 0.254 0.746 31 H 0.020 0.980 32 H 0.058 0.942 33 H 0.054 0.946 34 H 0.062 0.938 35 H 0.081 0.919 36 H 0.390 0.610 37 H 0.394 0.606 38 H 0.070 0.930 39 H 0.076 0.924 40 H 0.074 0.926 41 H 0.073 0.927 42 H 0.175 0.825 43 H 0.085 0.915 44 H 0.091 0.909 45 H 0.053 0.947 46 H 0.053 0.947 47 H 0.021 0.979 48 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.207 -23.765 -16.445 28.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.197 4.197 3 Si 0.732 3.268 4 H -0.215 1.215 5 H -0.218 1.218 6 H -0.204 1.204 7 C -0.383 4.383 8 H 0.084 0.916 9 N -0.316 5.316 10 C 0.021 3.979 11 C -0.178 4.178 12 C 0.065 3.935 13 N -0.393 5.393 14 C 0.401 3.599 15 O -0.463 6.463 16 N -0.403 5.403 17 C 0.065 3.935 18 H 0.111 0.889 19 C -0.163 4.163 20 C -0.073 4.073 21 C -0.252 4.252 22 C -0.086 4.086 23 N -0.195 5.195 24 H 0.282 0.718 25 N -0.108 5.108 26 C -0.077 4.077 27 C -0.093 4.093 28 C -0.187 4.187 29 C 0.047 3.953 30 H 0.064 0.936 31 H 0.038 0.962 32 H 0.076 0.924 33 H 0.073 0.927 34 H 0.081 0.919 35 H 0.099 0.901 36 H 0.222 0.778 37 H 0.227 0.773 38 H 0.089 0.911 39 H 0.094 0.906 40 H 0.092 0.908 41 H 0.092 0.908 42 H 0.193 0.807 43 H 0.103 0.897 44 H 0.110 0.890 45 H 0.072 0.928 46 H 0.072 0.928 47 H 0.039 0.961 48 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -2.917 -22.370 -16.545 27.976 hybrid contribution 1.080 -0.004 -0.507 1.193 sum -1.837 -22.374 -17.052 28.191 Atomic orbital electron populations 1.70054 1.05253 1.25493 1.53656 1.25064 0.95271 0.98448 1.00916 0.86282 0.79123 0.83820 0.77570 1.21515 1.21812 1.20419 1.19185 0.92717 0.84875 1.41539 0.91640 1.44115 1.36408 1.01410 1.49631 1.20840 0.97935 0.86745 0.92348 1.22341 0.96856 0.99632 0.98999 1.20893 0.98474 0.88219 0.85909 1.45528 1.07738 1.47320 1.38735 1.16033 0.85314 0.78918 0.79610 1.90942 1.21209 1.67562 1.66625 1.45185 1.09617 1.48000 1.37533 1.20665 0.88743 0.90206 0.93849 0.88900 1.21837 0.98161 0.95198 1.01071 1.19909 0.93415 0.95951 0.98073 1.20133 1.03544 0.94001 1.07547 1.22049 0.96140 0.93049 0.97320 1.46360 1.30152 1.03544 1.39398 0.71782 1.77083 1.09362 1.08706 1.15657 1.22254 0.95802 0.93413 0.96226 1.20568 0.95330 0.97892 0.95538 1.22570 1.00452 0.95262 1.00406 1.20759 0.88711 0.98161 0.87659 0.93609 0.96182 0.92387 0.92691 0.91948 0.90100 0.77768 0.77270 0.91148 0.90576 0.90754 0.90848 0.80742 0.89687 0.89049 0.92846 0.92802 0.96120 0.89390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.69 11.22 55.49 0.62 -26.07 16 2 C 0.00 0.05 4.90 -17.43 -0.09 -0.03 16 3 Si 0.90 21.90 29.59 -169.99 -5.03 16.87 16 4 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 5 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 6 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.25 -6.98 9.58 -15.06 -0.14 -7.13 16 8 H 0.07 1.76 7.89 -52.49 -0.41 1.34 16 9 N -0.59 -14.97 2.99 -172.33 -0.52 -15.49 16 10 C 0.15 3.08 6.52 -3.71 -0.02 3.06 16 11 C -0.14 -2.30 5.55 -26.61 -0.15 -2.45 16 12 C 0.17 2.98 2.42 -67.89 -0.16 2.82 16 13 N -0.74 -10.35 5.08 -58.63 -0.30 -10.65 16 14 C 0.70 10.48 8.50 -86.91 -0.74 9.74 16 15 O -0.59 -11.55 15.66 5.29 0.08 -11.46 16 16 N -0.75 -7.71 5.08 -58.47 -0.30 -8.01 16 17 C 0.17 1.73 2.40 -67.72 -0.16 1.57 16 18 H 0.09 1.17 7.53 -51.93 -0.39 0.78 16 19 C -0.12 -0.84 5.33 -26.52 -0.14 -0.98 16 20 C -0.03 -0.23 6.28 -27.59 -0.17 -0.40 16 21 C -0.24 -2.14 5.89 -104.98 -0.62 -2.76 16 22 C 0.06 0.43 11.95 -17.37 -0.21 0.22 16 23 N -0.49 -4.08 7.37 30.35 0.22 -3.86 16 24 H 0.44 2.21 8.96 -182.44 -1.64 0.58 16 25 N -0.29 -3.56 12.68 33.75 0.43 -3.13 16 26 C 0.09 1.07 7.10 -82.35 -0.58 0.48 16 27 C -0.05 -0.60 5.88 -27.57 -0.16 -0.76 16 28 C -0.15 -2.99 5.65 -26.61 -0.15 -3.14 16 29 C 0.17 4.31 5.31 -3.72 -0.02 4.29 16 30 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 31 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.06 1.16 7.93 -51.93 -0.41 0.74 16 33 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.08 1.63 7.57 -51.93 -0.39 1.24 16 36 H 0.39 4.18 8.62 -40.82 -0.35 3.82 16 37 H 0.39 2.80 8.62 -40.82 -0.35 2.45 16 38 H 0.07 0.43 8.10 -51.93 -0.42 0.01 16 39 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 41 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.18 0.54 8.06 -52.49 -0.42 0.11 16 43 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 44 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 45 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 46 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 47 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 48 H 0.09 2.44 6.06 -51.93 -0.31 2.12 16 LS Contribution 381.46 15.07 5.75 5.75 Total: -1.00 -35.73 381.46 -11.45 -47.18 By element: Atomic # 1 Polarization: 13.24 SS G_CDS: -8.89 Total: 4.35 kcal Atomic # 6 Polarization: 8.05 SS G_CDS: -3.52 Total: 4.52 kcal Atomic # 7 Polarization: -67.36 SS G_CDS: 0.16 Total: -67.20 kcal Atomic # 8 Polarization: -11.55 SS G_CDS: 0.08 Total: -11.46 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.03 Total: 16.87 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -35.73 -11.45 -47.18 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610720380.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.200 kcal (2) G-P(sol) polarization free energy of solvation -35.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.176 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds