Wall clock time and date at job start Tue Mar 31 2020 17:54:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86795 * 119.99998 * 2 1 4 4 H 1.48507 * 109.47208 * 274.06835 * 3 2 1 5 5 H 1.48503 * 109.47265 * 34.06300 * 3 2 1 6 6 H 1.48493 * 109.47194 * 154.06868 * 3 2 1 7 7 C 1.38811 * 120.00092 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00064 * 197.50306 * 7 2 1 9 9 N 1.36945 * 119.99517 * 17.49879 * 7 2 1 10 10 C 1.46925 * 120.62652 * 207.96014 * 9 7 2 11 11 C 1.53192 * 108.77840 * 233.63563 * 10 9 7 12 12 C 1.53047 * 109.30974 * 305.36754 * 11 10 9 13 13 N 1.46497 * 109.45871 * 181.38285 * 12 11 10 14 14 C 1.34785 * 119.99952 * 154.97581 * 13 12 11 15 15 O 1.21585 * 119.99436 * 359.97438 * 14 13 12 16 16 N 1.34774 * 119.99990 * 180.02562 * 14 13 12 17 17 C 1.46502 * 119.99876 * 179.97438 * 16 14 13 18 18 H 1.08996 * 109.37363 * 325.13307 * 17 16 14 19 19 C 1.53026 * 109.42178 * 205.28052 * 17 16 14 20 20 C 1.53385 * 109.72116 * 168.19420 * 19 17 16 21 21 C 1.50886 * 108.19451 * 50.53972 * 20 19 17 22 22 C 1.34573 * 128.32755 * 163.32435 * 21 20 19 23 23 N 1.35197 * 107.62059 * 180.19436 * 22 21 20 24 24 H 0.96996 * 126.00650 * 180.19762 * 23 22 21 25 25 N 1.40316 * 107.98790 * 359.93532 * 23 22 21 26 26 C 1.30124 * 108.12699 * 0.02562 * 25 23 22 27 27 C 1.50945 * 128.28872 * 180.16276 * 26 25 23 28 28 C 1.53042 * 109.52757 * 61.36940 * 12 11 10 29 29 C 1.46919 * 120.63384 * 27.99075 * 9 7 2 30 30 H 0.97003 * 119.99580 * 359.97438 * 1 2 3 31 31 H 1.08997 * 109.58741 * 113.84694 * 10 9 7 32 32 H 1.09005 * 109.58694 * 353.42005 * 10 9 7 33 33 H 1.08990 * 109.50258 * 185.41390 * 11 10 9 34 34 H 1.09003 * 109.50026 * 65.30915 * 11 10 9 35 35 H 1.08993 * 109.45848 * 301.35485 * 12 11 10 36 36 H 0.97003 * 120.00140 * 334.97296 * 13 12 11 37 37 H 0.97003 * 120.00103 * 359.97438 * 16 14 13 38 38 H 1.09004 * 109.42655 * 288.26837 * 19 17 16 39 39 H 1.08994 * 109.43116 * 48.16667 * 19 17 16 40 40 H 1.08995 * 109.72106 * 170.21601 * 20 19 17 41 41 H 1.09002 * 109.71886 * 290.82757 * 20 19 17 42 42 H 1.08000 * 126.18963 * 0.17550 * 22 21 20 43 43 H 1.09004 * 109.71625 * 282.90393 * 27 26 25 44 44 H 1.08998 * 109.71583 * 43.54586 * 27 26 25 45 45 H 1.09005 * 109.49585 * 58.57836 * 28 12 11 46 46 H 1.08997 * 109.49607 * 178.67477 * 28 12 11 47 47 H 1.09001 * 109.58399 * 246.15327 * 29 9 7 48 48 H 1.09004 * 109.58479 * 6.57263 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4118 2.0961 -1.3966 5 1 1.4933 2.6263 0.7842 6 1 3.5881 1.4168 0.6122 7 6 2.0104 -1.2021 0.0005 8 1 3.0528 -1.2236 0.2818 9 7 1.3731 -2.3608 -0.3556 10 6 1.8151 -3.6542 0.1833 11 6 2.0771 -4.6111 -0.9839 12 6 0.8272 -4.6907 -1.8635 13 7 1.0628 -5.6303 -2.9624 14 6 0.0222 -6.2504 -3.5536 15 8 -1.1118 -6.0302 -3.1745 16 7 0.2390 -7.1153 -4.5643 17 6 -0.8920 -7.7897 -5.2065 18 1 -1.6604 -7.9960 -4.4615 19 6 -0.4154 -9.1062 -5.8240 20 6 -1.6262 -9.9530 -6.2358 21 6 -2.5477 -9.0880 -7.0599 22 6 -3.5495 -9.4731 -7.8718 23 7 -4.0962 -8.3573 -8.4047 24 1 -4.8406 -8.3278 -9.0259 25 7 -3.4014 -7.2491 -7.8967 26 6 -2.4760 -7.6854 -7.0926 27 6 -1.4715 -6.8842 -6.3004 28 6 0.5148 -3.3057 -2.4350 29 6 0.2349 -2.3342 -1.2842 30 1 -0.4850 0.8401 0.0004 31 1 1.0380 -4.0668 0.8267 32 1 2.7322 -3.5171 0.7563 33 1 2.3128 -5.6021 -0.5962 34 1 2.9152 -4.2426 -1.5755 35 1 -0.0163 -5.0354 -1.2654 36 1 1.9676 -5.8063 -3.2647 37 1 1.1438 -7.2913 -4.8665 38 1 0.1948 -8.8949 -6.7022 39 1 0.1786 -9.6554 -5.0935 40 1 -1.2944 -10.8056 -6.8283 41 1 -2.1488 -10.3046 -5.3461 42 1 -3.8603 -10.4895 -8.0633 43 1 -0.6719 -6.5435 -6.9581 44 1 -1.9639 -6.0256 -5.8438 45 1 1.3679 -2.9497 -3.0126 46 1 -0.3616 -3.3676 -3.0801 47 1 -0.6711 -2.6391 -0.7605 48 1 0.1092 -1.3261 -1.6794 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610720380.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:54:59 Heat of formation + Delta-G solvation = 30.405027 kcal Electronic energy + Delta-G solvation = -28553.376073 eV Core-core repulsion = 24643.678124 eV Total energy + Delta-G solvation = -3909.697949 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.40906 -41.17926 -39.25124 -37.82509 -35.90542 -34.61250 -33.71797 -33.06584 -31.75176 -31.29596 -30.11521 -29.40869 -26.90732 -25.23641 -23.88770 -23.69963 -22.57737 -21.93865 -21.72138 -21.03026 -20.05162 -19.21500 -18.63947 -18.34177 -17.57869 -16.83317 -16.32989 -16.14521 -15.99539 -15.70569 -15.34923 -15.30191 -15.06657 -14.76486 -14.58346 -14.51960 -14.33933 -14.05869 -13.87818 -13.71347 -13.16341 -13.01610 -12.95572 -12.61401 -12.59111 -12.49010 -12.18432 -12.09941 -12.00619 -11.84142 -11.75512 -11.50836 -11.40276 -11.32859 -11.10806 -10.57570 -10.40292 -10.26252 -9.71507 -9.32088 -8.70707 -7.86306 -5.32541 0.99206 1.47813 1.49390 1.58883 1.68944 1.77532 2.05602 2.24757 2.52485 3.25895 3.32869 3.59672 3.69462 3.80053 3.92437 3.94116 4.12326 4.14276 4.32785 4.38293 4.38707 4.50286 4.50751 4.66485 4.69696 4.71407 4.83201 4.85898 4.92332 4.99514 5.02814 5.09560 5.12459 5.16449 5.23679 5.27935 5.34813 5.40082 5.47989 5.58511 5.64900 5.66602 5.70811 5.74196 6.13684 6.39604 6.51681 6.73583 7.14057 7.23464 7.70309 7.85594 8.38553 9.20839 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.022967 B = 0.002170 C = 0.002040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.873936 B =12901.184811 C =13721.956965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C -0.057 4.057 3 Si 0.970 3.030 4 H -0.288 1.288 5 H -0.298 1.298 6 H -0.262 1.262 7 C -0.259 4.259 8 H 0.076 0.924 9 N -0.609 5.609 10 C 0.140 3.860 11 C -0.119 4.119 12 C 0.182 3.818 13 N -0.724 5.724 14 C 0.698 3.302 15 O -0.638 6.638 16 N -0.724 5.724 17 C 0.176 3.824 18 H 0.064 0.936 19 C -0.114 4.114 20 C -0.031 4.031 21 C -0.259 4.259 22 C 0.076 3.924 23 N -0.481 5.481 24 H 0.451 0.549 25 N -0.339 5.339 26 C 0.070 3.930 27 C -0.049 4.049 28 C -0.130 4.130 29 C 0.183 3.817 30 H 0.248 0.752 31 H 0.011 0.989 32 H 0.069 0.931 33 H 0.093 0.907 34 H 0.076 0.924 35 H 0.053 0.947 36 H 0.412 0.588 37 H 0.415 0.585 38 H 0.084 0.916 39 H 0.095 0.905 40 H 0.104 0.896 41 H 0.074 0.926 42 H 0.222 0.778 43 H 0.093 0.907 44 H 0.049 0.951 45 H 0.061 0.939 46 H 0.040 0.960 47 H -0.013 1.013 48 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.413 -27.061 -17.871 32.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.252 4.252 3 Si 0.798 3.202 4 H -0.215 1.215 5 H -0.225 1.225 6 H -0.186 1.186 7 C -0.389 4.389 8 H 0.093 0.907 9 N -0.333 5.333 10 C 0.015 3.985 11 C -0.159 4.159 12 C 0.076 3.924 13 N -0.379 5.379 14 C 0.398 3.602 15 O -0.520 6.520 16 N -0.380 5.380 17 C 0.069 3.931 18 H 0.082 0.918 19 C -0.152 4.152 20 C -0.070 4.070 21 C -0.270 4.270 22 C -0.070 4.070 23 N -0.190 5.190 24 H 0.297 0.703 25 N -0.163 5.163 26 C -0.098 4.098 27 C -0.089 4.089 28 C -0.170 4.170 29 C 0.056 3.944 30 H 0.057 0.943 31 H 0.029 0.971 32 H 0.088 0.912 33 H 0.111 0.889 34 H 0.095 0.905 35 H 0.072 0.928 36 H 0.248 0.752 37 H 0.252 0.748 38 H 0.102 0.898 39 H 0.114 0.886 40 H 0.122 0.878 41 H 0.092 0.908 42 H 0.238 0.762 43 H 0.111 0.889 44 H 0.067 0.933 45 H 0.079 0.921 46 H 0.058 0.942 47 H 0.005 0.995 48 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -0.214 -25.728 -18.015 31.409 hybrid contribution 0.167 0.957 -0.088 0.975 sum -0.047 -24.772 -18.103 30.682 Atomic orbital electron populations 1.70232 1.06973 1.25792 1.55618 1.25903 0.95994 1.01903 1.01438 0.85211 0.78347 0.79374 0.77279 1.21466 1.22534 1.18611 1.19597 0.93225 0.85817 1.40227 0.90668 1.44365 1.36110 1.02686 1.50144 1.21066 0.97882 0.85515 0.94081 1.22128 0.96186 1.00443 0.97130 1.20471 0.98375 0.86941 0.86630 1.45077 1.08770 1.46284 1.37793 1.16239 0.84495 0.79281 0.80210 1.90924 1.23482 1.69241 1.68311 1.44952 1.11011 1.46301 1.35779 1.20684 0.88024 0.91702 0.92642 0.91819 1.21809 0.98703 0.92947 1.01758 1.19993 0.92676 0.96183 0.98135 1.20513 1.04931 0.92928 1.08637 1.22784 0.94587 0.94287 0.95341 1.46413 1.30145 1.03198 1.39281 0.70316 1.76977 1.10830 1.11151 1.17307 1.22365 0.95914 0.95026 0.96492 1.20457 0.95572 0.96952 0.95951 1.22313 1.00087 0.96253 0.98378 1.20453 0.87908 0.97290 0.88748 0.94262 0.97107 0.91222 0.88869 0.90512 0.92841 0.75157 0.74770 0.89770 0.88626 0.87817 0.90804 0.76177 0.88863 0.93252 0.92052 0.94159 0.99478 0.92892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.13 11.22 21.65 0.24 -57.88 16 2 C -0.06 -3.29 4.90 84.86 0.42 -2.87 16 3 Si 0.97 45.68 29.59 68.60 2.03 47.71 16 4 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 5 H -0.30 -14.27 7.11 99.48 0.71 -13.56 16 6 H -0.26 -11.49 7.11 99.48 0.71 -10.78 16 7 C -0.26 -14.30 9.58 84.03 0.81 -13.49 16 8 H 0.08 3.95 7.89 -2.91 -0.02 3.93 16 9 N -0.61 -31.22 2.99 -699.12 -2.09 -33.31 16 10 C 0.14 5.69 6.52 86.36 0.56 6.26 16 11 C -0.12 -3.66 5.55 30.67 0.17 -3.49 16 12 C 0.18 6.30 2.42 45.02 0.11 6.41 16 13 N -0.72 -19.00 5.08 -457.68 -2.33 -21.33 16 14 C 0.70 20.58 8.50 179.05 1.52 22.10 16 15 O -0.64 -26.22 15.66 -3.99 -0.06 -26.28 16 16 N -0.72 -13.88 5.08 -457.16 -2.32 -16.21 16 17 C 0.18 3.44 2.40 45.13 0.11 3.55 16 18 H 0.06 1.66 7.53 -2.39 -0.02 1.64 16 19 C -0.11 -1.20 5.33 30.73 0.16 -1.03 16 20 C -0.03 -0.31 6.28 30.04 0.19 -0.12 16 21 C -0.26 -4.14 5.89 -20.10 -0.12 -4.25 16 22 C 0.08 0.88 11.95 83.33 1.00 1.87 16 23 N -0.48 -7.56 7.37 -57.88 -0.43 -7.99 16 24 H 0.45 4.06 8.96 -213.19 -1.91 2.15 16 25 N -0.34 -8.68 12.68 -47.14 -0.60 -9.27 16 26 C 0.07 1.64 7.10 43.44 0.31 1.95 16 27 C -0.05 -1.15 5.88 30.05 0.18 -0.98 16 28 C -0.13 -5.44 5.65 30.67 0.17 -5.27 16 29 C 0.18 9.54 5.31 86.36 0.46 10.00 16 30 H 0.25 14.91 8.31 -92.71 -0.77 14.14 16 31 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 32 H 0.07 2.64 7.93 -2.38 -0.02 2.63 16 33 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 34 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 35 H 0.05 2.20 7.57 -2.39 -0.02 2.18 16 36 H 0.41 7.35 8.62 -92.71 -0.80 6.55 16 37 H 0.42 4.58 8.62 -92.71 -0.80 3.78 16 38 H 0.08 0.70 8.10 -2.38 -0.02 0.69 16 39 H 0.10 0.68 8.14 -2.39 -0.02 0.67 16 40 H 0.10 0.47 8.14 -2.39 -0.02 0.45 16 41 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 42 H 0.22 0.31 8.06 -2.91 -0.02 0.29 16 43 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 44 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 45 H 0.06 2.46 8.14 -2.38 -0.02 2.44 16 46 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 47 H -0.01 -0.74 8.14 -2.39 -0.02 -0.76 16 48 H 0.05 3.11 6.06 -2.39 -0.01 3.10 16 Total: -1.00 -84.32 381.46 -2.02 -86.35 By element: Atomic # 1 Polarization: 20.09 SS G_CDS: -2.51 Total: 17.58 kcal Atomic # 6 Polarization: 14.59 SS G_CDS: 6.04 Total: 20.63 kcal Atomic # 7 Polarization: -138.47 SS G_CDS: -7.52 Total: -145.99 kcal Atomic # 8 Polarization: -26.22 SS G_CDS: -0.06 Total: -26.28 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 2.03 Total: 47.71 kcal Total: -84.32 -2.02 -86.35 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610720380.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.753 kcal (2) G-P(sol) polarization free energy of solvation -84.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.348 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds