Wall clock time and date at job start Tue Mar 31 2020 17:55:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86799 * 119.99909 * 2 1 4 4 H 1.48498 * 109.47329 * 0.02562 * 3 2 1 5 5 H 1.48495 * 109.47105 * 240.00206 * 3 2 1 6 6 H 1.48503 * 109.46825 * 119.99957 * 3 2 1 7 7 C 1.38803 * 119.99736 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99888 * 155.49686 * 7 2 1 9 9 N 1.36936 * 120.00756 * 335.49342 * 7 2 1 10 10 C 1.46932 * 120.62484 * 331.82023 * 9 7 2 11 11 C 1.52761 * 109.00441 * 233.58057 * 10 9 7 12 12 C 1.53044 * 109.38356 * 305.58599 * 11 10 9 13 13 N 1.46497 * 109.44542 * 181.25540 * 12 11 10 14 14 C 1.34782 * 120.00192 * 84.94328 * 13 12 11 15 15 O 1.21583 * 119.99917 * 359.97438 * 14 13 12 16 16 N 1.34772 * 119.99984 * 179.97438 * 14 13 12 17 17 C 1.46504 * 119.99720 * 179.97438 * 16 14 13 18 18 H 1.08999 * 109.71341 * 34.40267 * 17 16 14 19 19 C 1.53376 * 109.71355 * 155.00081 * 17 16 14 20 20 C 1.53025 * 109.75226 * 170.34351 * 19 17 16 21 21 C 1.53385 * 109.72196 * 288.29469 * 20 19 17 22 22 C 1.50882 * 108.19840 * 50.55649 * 21 20 19 23 23 C 1.34564 * 128.33108 * 163.33015 * 22 21 20 24 24 N 1.35195 * 107.61912 * 180.12886 * 23 22 21 25 25 H 0.97002 * 126.00979 * 179.97438 * 24 23 22 26 26 N 1.40318 * 107.99272 * 359.96764 * 24 23 22 27 27 C 1.30128 * 108.12024 * 359.95792 * 26 24 23 28 28 C 1.53033 * 109.53734 * 61.24440 * 12 11 10 29 29 C 1.46922 * 120.63625 * 152.09452 * 9 7 2 30 30 H 0.97002 * 120.00481 * 174.24549 * 1 2 3 31 31 H 1.09003 * 109.58609 * 353.41270 * 10 9 7 32 32 H 1.08993 * 109.58780 * 113.84153 * 10 9 7 33 33 H 1.09006 * 109.56299 * 185.55064 * 11 10 9 34 34 H 1.08997 * 109.36488 * 65.49845 * 11 10 9 35 35 H 1.09003 * 109.46011 * 301.22012 * 12 11 10 36 36 H 0.97002 * 120.00075 * 264.93612 * 13 12 11 37 37 H 0.97002 * 120.00283 * 359.97438 * 16 14 13 38 38 H 1.09005 * 109.42184 * 290.42570 * 19 17 16 39 39 H 1.08997 * 109.42649 * 50.31422 * 19 17 16 40 40 H 1.09003 * 109.42939 * 48.36991 * 20 19 17 41 41 H 1.09001 * 109.42656 * 168.21928 * 20 19 17 42 42 H 1.09006 * 109.71630 * 170.22927 * 21 20 19 43 43 H 1.08999 * 109.72111 * 290.83331 * 21 20 19 44 44 H 1.07999 * 126.19183 * 0.15959 * 23 22 21 45 45 H 1.09000 * 109.50059 * 178.68310 * 28 12 11 46 46 H 1.09002 * 109.50022 * 58.58128 * 28 12 11 47 47 H 1.08999 * 109.58741 * 246.15851 * 29 9 7 48 48 H 1.09001 * 109.58687 * 6.44113 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 1.2852 2.7465 0.0006 5 1 3.1038 1.6964 -1.2125 6 1 3.1039 1.6964 1.2126 7 6 2.0101 -1.2021 -0.0005 8 1 3.0172 -1.2441 -0.3885 9 7 1.4181 -2.3349 0.4908 10 6 0.3872 -2.2483 1.5342 11 6 0.7855 -3.1479 2.7029 12 6 1.0415 -4.5661 2.1879 13 7 1.3944 -5.4369 3.3119 14 6 0.4239 -6.0161 4.0462 15 8 -0.7445 -5.8156 3.7761 16 7 0.7486 -6.8176 5.0799 17 6 -0.3064 -7.4467 5.8784 18 1 -1.1550 -7.6908 5.2395 19 6 0.2328 -8.7247 6.5331 20 6 -0.7807 -9.2514 7.5514 21 6 -0.8070 -8.3318 8.7787 22 6 -0.9728 -6.9108 8.2993 23 6 -1.3472 -5.8294 9.0074 24 7 -1.3610 -4.7728 8.1641 25 1 -1.5936 -3.8603 8.3970 26 7 -0.9795 -5.2278 6.8928 27 6 -0.7461 -6.5055 6.9734 28 6 2.1920 -4.5444 1.1790 29 6 1.8058 -3.6602 -0.0109 30 1 -0.4851 -0.8358 -0.0842 31 1 0.3030 -1.2180 1.8801 32 1 -0.5696 -2.5799 1.1310 33 1 -0.0185 -3.1676 3.4388 34 1 1.6929 -2.7594 3.1651 35 1 0.1412 -4.9448 1.7039 36 1 2.3265 -5.5966 3.5276 37 1 1.6807 -6.9778 5.2953 38 1 0.4027 -9.4808 5.7664 39 1 1.1726 -8.5040 7.0392 40 1 -1.7711 -9.2778 7.0969 41 1 -0.4965 -10.2579 7.8585 42 1 -1.6434 -8.6024 9.4232 43 1 0.1283 -8.4277 9.3303 44 1 -1.5918 -5.8092 10.0591 45 1 2.3893 -5.5580 0.8302 46 1 3.0862 -4.1426 1.6556 47 1 0.9670 -4.1093 -0.5427 48 1 2.6556 -3.5610 -0.6862 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610810700.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:55:16 Heat of formation + Delta-G solvation = 56.030992 kcal Electronic energy + Delta-G solvation = -29126.829995 eV Core-core repulsion = 25218.243271 eV Total energy + Delta-G solvation = -3908.586724 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.63993 -39.81725 -37.79206 -36.83320 -34.50458 -34.09654 -32.22618 -31.26489 -30.48912 -30.04772 -29.15879 -27.94319 -24.90108 -24.20051 -22.40184 -22.20510 -21.92925 -21.03569 -20.40721 -19.36332 -19.20185 -17.99203 -17.68750 -17.28831 -16.43531 -15.66195 -15.11462 -14.81149 -14.53859 -14.40952 -14.17254 -14.02313 -13.88923 -13.55785 -13.46502 -13.31273 -13.13185 -12.97040 -12.67695 -12.27326 -12.24752 -11.72361 -11.59220 -11.26244 -11.22456 -11.10255 -10.69261 -10.57766 -10.49389 -10.35337 -10.13975 -9.93890 -9.92837 -9.80506 -9.54416 -9.22709 -9.16353 -8.59435 -8.51847 -8.29916 -6.82391 -6.00295 -3.16968 1.80458 2.45177 2.74003 3.00720 3.52627 3.53495 3.56410 3.74513 4.19321 4.38287 4.50031 4.58838 4.64726 4.69636 4.94509 5.04966 5.16832 5.27717 5.30627 5.37589 5.43694 5.46141 5.51728 5.57604 5.62840 5.70462 5.80464 5.84529 5.93958 5.97856 6.05650 6.22175 6.36059 6.42167 6.44253 6.53154 6.56107 6.64614 6.74834 6.86511 6.97007 7.13383 7.17439 7.20502 7.32236 7.63568 8.05822 8.24772 8.64323 8.90162 9.18686 9.91342 10.36569 11.28455 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.020054 B = 0.002573 C = 0.002365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1395.875197 B =10879.638075 C =11838.048308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.025 4.025 3 Si 1.065 2.935 4 H -0.286 1.286 5 H -0.293 1.293 6 H -0.294 1.294 7 C -0.350 4.350 8 H 0.055 0.945 9 N -0.600 5.600 10 C 0.154 3.846 11 C -0.140 4.140 12 C 0.172 3.828 13 N -0.741 5.741 14 C 0.707 3.293 15 O -0.578 6.578 16 N -0.743 5.743 17 C 0.248 3.752 18 H 0.105 0.895 19 C -0.120 4.120 20 C -0.114 4.114 21 C -0.039 4.039 22 C -0.238 4.238 23 C 0.054 3.946 24 N -0.486 5.486 25 H 0.439 0.561 26 N -0.247 5.247 27 C 0.062 3.938 28 C -0.138 4.138 29 C 0.151 3.849 30 H 0.270 0.730 31 H 0.079 0.921 32 H 0.018 0.982 33 H 0.057 0.943 34 H 0.054 0.946 35 H 0.080 0.920 36 H 0.389 0.611 37 H 0.393 0.607 38 H 0.079 0.921 39 H 0.072 0.928 40 H 0.068 0.932 41 H 0.072 0.928 42 H 0.069 0.931 43 H 0.068 0.932 44 H 0.173 0.827 45 H 0.056 0.944 46 H 0.062 0.938 47 H 0.018 0.982 48 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.512 -20.187 20.175 28.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.227 4.227 3 Si 0.895 3.105 4 H -0.211 1.211 5 H -0.220 1.220 6 H -0.222 1.222 7 C -0.479 4.479 8 H 0.073 0.927 9 N -0.324 5.324 10 C 0.028 3.972 11 C -0.181 4.181 12 C 0.068 3.932 13 N -0.394 5.394 14 C 0.407 3.593 15 O -0.454 6.454 16 N -0.399 5.399 17 C 0.140 3.860 18 H 0.123 0.877 19 C -0.159 4.159 20 C -0.152 4.152 21 C -0.078 4.078 22 C -0.250 4.250 23 C -0.092 4.092 24 N -0.195 5.195 25 H 0.282 0.718 26 N -0.068 5.068 27 C -0.110 4.110 28 C -0.178 4.178 29 C 0.024 3.976 30 H 0.081 0.919 31 H 0.098 0.902 32 H 0.036 0.964 33 H 0.076 0.924 34 H 0.073 0.927 35 H 0.098 0.902 36 H 0.221 0.779 37 H 0.227 0.773 38 H 0.097 0.903 39 H 0.090 0.910 40 H 0.087 0.913 41 H 0.091 0.909 42 H 0.088 0.912 43 H 0.086 0.914 44 H 0.190 0.810 45 H 0.074 0.926 46 H 0.081 0.919 47 H 0.036 0.964 48 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 0.209 -17.277 19.167 25.806 hybrid contribution 0.983 -1.850 1.033 2.336 sum 1.192 -19.127 20.200 27.844 Atomic orbital electron populations 1.70759 1.06599 1.30482 1.47736 1.25846 0.96567 1.01462 0.98847 0.83532 0.74764 0.76143 0.76098 1.21116 1.22004 1.22153 1.19952 0.97167 0.88376 1.42414 0.92691 1.44159 1.45985 1.01294 1.40950 1.20835 0.90421 0.98887 0.87098 1.22362 1.01007 0.94935 0.99784 1.20814 0.98279 0.89420 0.84716 1.45444 1.07827 1.51838 1.34304 1.15924 0.85499 0.78550 0.79370 1.90935 1.17262 1.65711 1.71519 1.45077 1.09027 1.52817 1.32940 1.19156 0.90957 0.88147 0.87760 0.87747 1.21821 0.99625 0.95542 0.98906 1.21517 0.99716 0.98662 0.95318 1.19983 1.01553 0.89228 0.97004 1.20077 1.14748 0.96818 0.93402 1.22029 1.02218 0.87790 0.97113 1.46573 1.55732 1.10423 1.06753 0.71772 1.77363 1.18295 1.12360 0.98804 1.22813 1.00233 0.92525 0.95384 1.22327 0.97754 0.99675 0.98063 1.20824 0.97787 0.86351 0.92629 0.91887 0.90220 0.96369 0.92420 0.92692 0.90177 0.77860 0.77313 0.90286 0.90959 0.91275 0.90918 0.91212 0.91355 0.80988 0.92553 0.91906 0.96373 0.92262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -28.34 12.42 55.49 0.69 -27.65 16 2 C -0.03 -0.73 4.69 -17.43 -0.08 -0.81 16 3 Si 1.06 25.81 29.98 -169.99 -5.10 20.72 16 4 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 5 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 7 C -0.35 -9.98 9.49 -15.06 -0.14 -10.12 16 8 H 0.06 1.56 7.94 -52.48 -0.42 1.14 16 9 N -0.60 -15.51 2.85 -172.58 -0.49 -16.00 16 10 C 0.15 3.87 4.66 -3.93 -0.02 3.85 16 11 C -0.14 -3.00 5.63 -26.83 -0.15 -3.15 16 12 C 0.17 3.18 2.42 -67.89 -0.16 3.01 16 13 N -0.74 -11.24 5.08 -58.64 -0.30 -11.54 16 14 C 0.71 11.49 8.51 -86.92 -0.74 10.76 16 15 O -0.58 -12.05 15.66 5.29 0.08 -11.97 16 16 N -0.74 -8.84 5.08 -59.50 -0.30 -9.14 16 17 C 0.25 2.79 2.83 -68.77 -0.19 2.60 16 18 H 0.10 1.38 7.57 -51.93 -0.39 0.99 16 19 C -0.12 -0.83 5.35 -26.52 -0.14 -0.98 16 20 C -0.11 -0.68 5.87 -26.52 -0.16 -0.84 16 21 C -0.04 -0.25 6.28 -27.59 -0.17 -0.43 16 22 C -0.24 -2.33 5.89 -104.99 -0.62 -2.95 16 23 C 0.05 0.47 11.95 -17.37 -0.21 0.27 16 24 N -0.49 -5.38 7.37 30.35 0.22 -5.16 16 25 H 0.44 3.68 8.96 -182.43 -1.64 2.04 16 26 N -0.25 -3.79 12.68 33.75 0.43 -3.36 16 27 C 0.06 0.79 6.68 -82.35 -0.55 0.24 16 28 C -0.14 -2.41 5.55 -26.61 -0.15 -2.56 16 29 C 0.15 3.24 6.52 -3.71 -0.02 3.22 16 30 H 0.27 8.47 6.69 -40.82 -0.27 8.20 16 31 H 0.08 2.23 6.32 -51.93 -0.33 1.90 16 32 H 0.02 0.48 7.86 -51.93 -0.41 0.07 16 33 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 34 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 35 H 0.08 1.66 7.58 -51.93 -0.39 1.27 16 36 H 0.39 4.68 8.62 -40.82 -0.35 4.33 16 37 H 0.39 3.47 8.62 -40.82 -0.35 3.12 16 38 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.07 0.45 8.10 -51.93 -0.42 0.03 16 40 H 0.07 0.46 8.10 -51.93 -0.42 0.04 16 41 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 42 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 43 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 44 H 0.17 0.81 8.06 -52.49 -0.42 0.38 16 45 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 46 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 47 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 48 H 0.06 1.24 7.93 -51.93 -0.41 0.83 16 LS Contribution 380.38 15.07 5.73 5.73 Total: -1.00 -37.52 380.38 -11.37 -48.89 By element: Atomic # 1 Polarization: 16.18 SS G_CDS: -8.83 Total: 7.36 kcal Atomic # 6 Polarization: 5.62 SS G_CDS: -3.51 Total: 2.11 kcal Atomic # 7 Polarization: -73.09 SS G_CDS: 0.25 Total: -72.84 kcal Atomic # 8 Polarization: -12.05 SS G_CDS: 0.08 Total: -11.97 kcal Atomic # 14 Polarization: 25.81 SS G_CDS: -5.10 Total: 20.72 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -37.52 -11.37 -48.89 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610810700.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.925 kcal (2) G-P(sol) polarization free energy of solvation -37.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.894 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds