Wall clock time and date at job start Tue Mar 31 2020 17:55:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86799 * 119.99909 * 2 1 4 4 H 1.48498 * 109.47329 * 0.02562 * 3 2 1 5 5 H 1.48495 * 109.47105 * 240.00206 * 3 2 1 6 6 H 1.48503 * 109.46825 * 119.99957 * 3 2 1 7 7 C 1.38803 * 119.99736 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99888 * 155.49686 * 7 2 1 9 9 N 1.36936 * 120.00756 * 335.49342 * 7 2 1 10 10 C 1.46932 * 120.62484 * 331.82023 * 9 7 2 11 11 C 1.52761 * 109.00441 * 233.58057 * 10 9 7 12 12 C 1.53044 * 109.38356 * 305.58599 * 11 10 9 13 13 N 1.46497 * 109.44542 * 181.25540 * 12 11 10 14 14 C 1.34782 * 120.00192 * 84.94328 * 13 12 11 15 15 O 1.21583 * 119.99917 * 359.97438 * 14 13 12 16 16 N 1.34772 * 119.99984 * 179.97438 * 14 13 12 17 17 C 1.46504 * 119.99720 * 179.97438 * 16 14 13 18 18 H 1.08999 * 109.71341 * 34.40267 * 17 16 14 19 19 C 1.53376 * 109.71355 * 155.00081 * 17 16 14 20 20 C 1.53025 * 109.75226 * 170.34351 * 19 17 16 21 21 C 1.53385 * 109.72196 * 288.29469 * 20 19 17 22 22 C 1.50882 * 108.19840 * 50.55649 * 21 20 19 23 23 C 1.34564 * 128.33108 * 163.33015 * 22 21 20 24 24 N 1.35195 * 107.61912 * 180.12886 * 23 22 21 25 25 H 0.97002 * 126.00979 * 179.97438 * 24 23 22 26 26 N 1.40318 * 107.99272 * 359.96764 * 24 23 22 27 27 C 1.30128 * 108.12024 * 359.95792 * 26 24 23 28 28 C 1.53033 * 109.53734 * 61.24440 * 12 11 10 29 29 C 1.46922 * 120.63625 * 152.09452 * 9 7 2 30 30 H 0.97002 * 120.00481 * 174.24549 * 1 2 3 31 31 H 1.09003 * 109.58609 * 353.41270 * 10 9 7 32 32 H 1.08993 * 109.58780 * 113.84153 * 10 9 7 33 33 H 1.09006 * 109.56299 * 185.55064 * 11 10 9 34 34 H 1.08997 * 109.36488 * 65.49845 * 11 10 9 35 35 H 1.09003 * 109.46011 * 301.22012 * 12 11 10 36 36 H 0.97002 * 120.00075 * 264.93612 * 13 12 11 37 37 H 0.97002 * 120.00283 * 359.97438 * 16 14 13 38 38 H 1.09005 * 109.42184 * 290.42570 * 19 17 16 39 39 H 1.08997 * 109.42649 * 50.31422 * 19 17 16 40 40 H 1.09003 * 109.42939 * 48.36991 * 20 19 17 41 41 H 1.09001 * 109.42656 * 168.21928 * 20 19 17 42 42 H 1.09006 * 109.71630 * 170.22927 * 21 20 19 43 43 H 1.08999 * 109.72111 * 290.83331 * 21 20 19 44 44 H 1.07999 * 126.19183 * 0.15959 * 23 22 21 45 45 H 1.09000 * 109.50059 * 178.68310 * 28 12 11 46 46 H 1.09002 * 109.50022 * 58.58128 * 28 12 11 47 47 H 1.08999 * 109.58741 * 246.15851 * 29 9 7 48 48 H 1.09001 * 109.58687 * 6.44113 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 1.2852 2.7465 0.0006 5 1 3.1038 1.6964 -1.2125 6 1 3.1039 1.6964 1.2126 7 6 2.0101 -1.2021 -0.0005 8 1 3.0172 -1.2441 -0.3885 9 7 1.4181 -2.3349 0.4908 10 6 0.3872 -2.2483 1.5342 11 6 0.7855 -3.1479 2.7029 12 6 1.0415 -4.5661 2.1879 13 7 1.3944 -5.4369 3.3119 14 6 0.4239 -6.0161 4.0462 15 8 -0.7445 -5.8156 3.7761 16 7 0.7486 -6.8176 5.0799 17 6 -0.3064 -7.4467 5.8784 18 1 -1.1550 -7.6908 5.2395 19 6 0.2328 -8.7247 6.5331 20 6 -0.7807 -9.2514 7.5514 21 6 -0.8070 -8.3318 8.7787 22 6 -0.9728 -6.9108 8.2993 23 6 -1.3472 -5.8294 9.0074 24 7 -1.3610 -4.7728 8.1641 25 1 -1.5936 -3.8603 8.3970 26 7 -0.9795 -5.2278 6.8928 27 6 -0.7461 -6.5055 6.9734 28 6 2.1920 -4.5444 1.1790 29 6 1.8058 -3.6602 -0.0109 30 1 -0.4851 -0.8358 -0.0842 31 1 0.3030 -1.2180 1.8801 32 1 -0.5696 -2.5799 1.1310 33 1 -0.0185 -3.1676 3.4388 34 1 1.6929 -2.7594 3.1651 35 1 0.1412 -4.9448 1.7039 36 1 2.3265 -5.5966 3.5276 37 1 1.6807 -6.9778 5.2953 38 1 0.4027 -9.4808 5.7664 39 1 1.1726 -8.5040 7.0392 40 1 -1.7711 -9.2778 7.0969 41 1 -0.4965 -10.2579 7.8585 42 1 -1.6434 -8.6024 9.4232 43 1 0.1283 -8.4277 9.3303 44 1 -1.5918 -5.8092 10.0591 45 1 2.3893 -5.5580 0.8302 46 1 3.0862 -4.1426 1.6556 47 1 0.9670 -4.1093 -0.5427 48 1 2.6556 -3.5610 -0.6862 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610810700.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:55:15 Heat of formation + Delta-G solvation = 27.838451 kcal Electronic energy + Delta-G solvation = -29128.052515 eV Core-core repulsion = 25218.243271 eV Total energy + Delta-G solvation = -3909.809244 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.44250 -41.13212 -39.37969 -37.77745 -36.15835 -35.12682 -33.95126 -32.34015 -31.88200 -31.30694 -30.70773 -28.82119 -26.73374 -25.12259 -24.10954 -23.72891 -22.84296 -22.03741 -21.56910 -21.08359 -20.03476 -19.58066 -18.98844 -18.43172 -17.62263 -16.64455 -16.36063 -16.08585 -16.07519 -15.78841 -15.44922 -15.31251 -15.19585 -15.10279 -14.78467 -14.53585 -14.32887 -14.00751 -13.92280 -13.55158 -13.51458 -12.98818 -12.89696 -12.60454 -12.46586 -12.35625 -12.11089 -11.96837 -11.82940 -11.80277 -11.65197 -11.63929 -11.40910 -11.27600 -11.10160 -10.50431 -10.47661 -10.35198 -9.83989 -9.31216 -8.98259 -8.27341 -5.42930 1.01324 1.53448 1.56719 1.65559 1.83758 1.96847 1.97808 2.28316 2.65227 3.19675 3.25587 3.51567 3.56850 3.77123 3.82592 3.96262 4.02273 4.10468 4.22875 4.29967 4.38837 4.47069 4.48725 4.49589 4.64220 4.64849 4.74160 4.84214 4.90217 4.93135 4.97873 4.99983 5.02347 5.12509 5.12897 5.20779 5.30517 5.34727 5.38343 5.45289 5.56020 5.56768 5.75778 5.82713 6.02693 6.35504 6.49820 6.79960 7.02169 7.14812 7.66107 7.74757 8.20903 8.98444 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.020054 B = 0.002573 C = 0.002365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1395.875197 B =10879.638075 C =11838.048308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C -0.082 4.082 3 Si 1.117 2.883 4 H -0.295 1.295 5 H -0.270 1.270 6 H -0.279 1.279 7 C -0.354 4.354 8 H 0.060 0.940 9 N -0.616 5.616 10 C 0.165 3.835 11 C -0.123 4.123 12 C 0.185 3.815 13 N -0.727 5.727 14 C 0.703 3.297 15 O -0.629 6.629 16 N -0.723 5.723 17 C 0.242 3.758 18 H 0.075 0.925 19 C -0.109 4.109 20 C -0.113 4.113 21 C -0.036 4.036 22 C -0.249 4.249 23 C 0.064 3.936 24 N -0.490 5.490 25 H 0.445 0.555 26 N -0.319 5.319 27 C 0.046 3.954 28 C -0.119 4.119 29 C 0.143 3.857 30 H 0.252 0.748 31 H 0.043 0.957 32 H -0.006 1.006 33 H 0.040 0.960 34 H 0.057 0.943 35 H 0.055 0.945 36 H 0.409 0.591 37 H 0.411 0.589 38 H 0.093 0.907 39 H 0.087 0.913 40 H 0.056 0.944 41 H 0.101 0.899 42 H 0.085 0.915 43 H 0.085 0.915 44 H 0.216 0.784 45 H 0.095 0.905 46 H 0.073 0.927 47 H 0.013 0.987 48 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.140 -22.560 22.407 32.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.277 4.277 3 Si 0.941 3.059 4 H -0.221 1.221 5 H -0.196 1.196 6 H -0.205 1.205 7 C -0.483 4.483 8 H 0.078 0.922 9 N -0.341 5.341 10 C 0.039 3.961 11 C -0.163 4.163 12 C 0.079 3.921 13 N -0.382 5.382 14 C 0.403 3.597 15 O -0.509 6.509 16 N -0.379 5.379 17 C 0.134 3.866 18 H 0.093 0.907 19 C -0.148 4.148 20 C -0.151 4.151 21 C -0.074 4.074 22 C -0.261 4.261 23 C -0.082 4.082 24 N -0.200 5.200 25 H 0.290 0.710 26 N -0.142 5.142 27 C -0.124 4.124 28 C -0.158 4.158 29 C 0.018 3.982 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.012 0.988 33 H 0.059 0.941 34 H 0.076 0.924 35 H 0.074 0.926 36 H 0.245 0.755 37 H 0.248 0.752 38 H 0.111 0.889 39 H 0.105 0.895 40 H 0.075 0.925 41 H 0.119 0.881 42 H 0.103 0.897 43 H 0.103 0.897 44 H 0.233 0.767 45 H 0.114 0.886 46 H 0.092 0.908 47 H 0.031 0.969 48 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 2.916 -19.732 21.435 29.280 hybrid contribution 0.095 -1.163 0.379 1.227 sum 3.011 -20.895 21.814 30.356 Atomic orbital electron populations 1.70893 1.07819 1.29347 1.50775 1.27333 0.96563 1.05233 0.98608 0.82839 0.73785 0.71776 0.77470 1.22109 1.19571 1.20546 1.20275 0.97280 0.89401 1.41374 0.92238 1.44384 1.45832 1.02550 1.41348 1.20551 0.89753 0.97524 0.88314 1.22116 1.00208 0.96388 0.97619 1.20413 0.98127 0.87777 0.85780 1.45036 1.08812 1.50973 1.33360 1.16130 0.84737 0.78778 0.80031 1.90908 1.19542 1.67434 1.72974 1.44883 1.10371 1.51248 1.31388 1.19400 0.90151 0.89803 0.87228 0.90690 1.21822 1.00247 0.93298 0.99411 1.21556 0.98798 0.99981 0.94791 1.20091 1.03025 0.86918 0.97358 1.20559 1.14518 0.98880 0.92110 1.22782 1.00221 0.86624 0.98557 1.46612 1.55714 1.11476 1.06157 0.71023 1.77262 1.21183 1.14241 1.01471 1.23159 1.00020 0.92139 0.97065 1.22115 0.97013 1.00893 0.95812 1.21047 0.97794 0.84874 0.94530 0.93853 0.93822 0.98767 0.94140 0.92396 0.92646 0.75455 0.75182 0.88869 0.89459 0.92547 0.88095 0.89650 0.89703 0.76703 0.88626 0.90823 0.96869 0.91451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.96 12.42 21.65 0.27 -60.69 16 2 C -0.08 -4.84 4.69 84.86 0.40 -4.44 16 3 Si 1.12 52.45 29.98 68.60 2.06 54.51 16 4 H -0.29 -14.19 7.11 99.48 0.71 -13.48 16 5 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 6 H -0.28 -12.32 7.11 99.48 0.71 -11.62 16 7 C -0.35 -20.35 9.49 84.03 0.80 -19.55 16 8 H 0.06 3.33 7.94 -2.91 -0.02 3.30 16 9 N -0.62 -32.48 2.85 -699.93 -2.00 -34.48 16 10 C 0.17 8.76 4.66 86.22 0.40 9.16 16 11 C -0.12 -5.42 5.63 30.53 0.17 -5.24 16 12 C 0.18 6.81 2.42 45.02 0.11 6.92 16 13 N -0.73 -21.27 5.08 -457.69 -2.33 -23.60 16 14 C 0.70 22.99 8.51 179.05 1.52 24.51 16 15 O -0.63 -27.44 15.66 -3.98 -0.06 -27.50 16 16 N -0.72 -16.62 5.08 -460.43 -2.34 -18.96 16 17 C 0.24 5.37 2.83 44.45 0.13 5.49 16 18 H 0.08 2.10 7.57 -2.39 -0.02 2.08 16 19 C -0.11 -1.24 5.35 30.73 0.16 -1.08 16 20 C -0.11 -1.03 5.87 30.73 0.18 -0.85 16 21 C -0.04 -0.34 6.28 30.03 0.19 -0.15 16 22 C -0.25 -4.42 5.89 -20.10 -0.12 -4.54 16 23 C 0.06 0.99 11.95 83.33 1.00 1.99 16 24 N -0.49 -10.85 7.37 -57.89 -0.43 -11.27 16 25 H 0.44 7.66 8.96 -213.18 -1.91 5.75 16 26 N -0.32 -10.12 12.68 -47.14 -0.60 -10.71 16 27 C 0.05 1.18 6.68 43.44 0.29 1.47 16 28 C -0.12 -3.89 5.55 30.67 0.17 -3.72 16 29 C 0.14 6.05 6.52 86.36 0.56 6.62 16 30 H 0.25 16.72 6.69 -92.71 -0.62 16.10 16 31 H 0.04 2.59 6.32 -2.39 -0.02 2.58 16 32 H -0.01 -0.32 7.86 -2.39 -0.02 -0.34 16 33 H 0.04 1.90 8.14 -2.38 -0.02 1.88 16 34 H 0.06 2.50 8.14 -2.39 -0.02 2.48 16 35 H 0.06 2.36 7.58 -2.39 -0.02 2.34 16 36 H 0.41 8.74 8.62 -92.71 -0.80 7.94 16 37 H 0.41 6.36 8.62 -92.71 -0.80 5.56 16 38 H 0.09 0.81 8.14 -2.38 -0.02 0.79 16 39 H 0.09 0.77 8.10 -2.39 -0.02 0.75 16 40 H 0.06 0.67 8.10 -2.39 -0.02 0.65 16 41 H 0.10 0.41 8.14 -2.39 -0.02 0.39 16 42 H 0.09 0.58 8.14 -2.38 -0.02 0.56 16 43 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 44 H 0.22 1.23 8.06 -2.91 -0.02 1.21 16 45 H 0.10 2.47 8.14 -2.39 -0.02 2.45 16 46 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 47 H 0.01 0.58 8.14 -2.39 -0.02 0.56 16 48 H 0.07 2.72 7.93 -2.39 -0.02 2.70 16 Total: -1.00 -87.73 380.38 -1.82 -89.55 By element: Atomic # 1 Polarization: 28.93 SS G_CDS: -2.36 Total: 26.57 kcal Atomic # 6 Polarization: 10.63 SS G_CDS: 5.96 Total: 16.59 kcal Atomic # 7 Polarization: -152.30 SS G_CDS: -7.42 Total: -159.71 kcal Atomic # 8 Polarization: -27.44 SS G_CDS: -0.06 Total: -27.50 kcal Atomic # 14 Polarization: 52.45 SS G_CDS: 2.06 Total: 54.51 kcal Total: -87.73 -1.82 -89.55 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610810700.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.386 kcal (2) G-P(sol) polarization free energy of solvation -87.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.548 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds