Wall clock time and date at job start Tue Mar 31 2020 18:10:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86799 * 119.99944 * 2 1 4 4 H 1.48497 * 109.47257 * 270.00498 * 3 2 1 5 5 H 1.48505 * 109.47113 * 30.00193 * 3 2 1 6 6 H 1.48499 * 109.47259 * 150.00181 * 3 2 1 7 7 C 1.38817 * 120.00048 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00110 * 163.06816 * 7 2 1 9 9 N 1.36935 * 119.99460 * 343.05674 * 7 2 1 10 10 C 1.46924 * 120.63635 * 331.84443 * 9 7 2 11 11 C 1.53191 * 108.77411 * 233.62661 * 10 9 7 12 12 C 1.53040 * 109.31621 * 305.36741 * 11 10 9 13 13 N 1.46498 * 109.46074 * 181.38525 * 12 11 10 14 14 C 1.38625 * 120.00037 * 155.24741 * 13 12 11 15 15 C 1.39165 * 120.48778 * 359.44445 * 14 13 12 16 16 C 1.39131 * 118.27283 * 179.78685 * 15 14 13 17 17 N 1.38626 * 120.48643 * 180.24210 * 16 15 14 18 18 C 1.47021 * 111.00119 * 303.88741 * 17 16 15 19 19 C 1.53098 * 109.25819 * 177.60938 * 18 17 16 20 20 O 1.43012 * 109.26008 * 56.84538 * 19 18 17 21 21 C 1.43024 * 113.74132 * 301.33386 * 20 19 18 22 22 C 1.47015 * 110.99816 * 180.25077 * 17 16 15 23 23 N 1.33193 * 119.02457 * 0.48972 * 16 15 14 24 24 C 1.31731 * 120.88407 * 359.75156 * 23 16 15 25 25 N 1.31754 * 121.91038 * 359.97438 * 24 23 16 26 26 C 1.53035 * 109.52868 * 61.37064 * 12 11 10 27 27 C 1.46930 * 120.62159 * 151.86741 * 9 7 2 28 28 H 0.96997 * 120.00302 * 359.97438 * 1 2 3 29 29 H 1.09004 * 109.58531 * 113.84492 * 10 9 7 30 30 H 1.08992 * 109.70210 * 353.48762 * 10 9 7 31 31 H 1.09005 * 109.49625 * 185.41402 * 11 10 9 32 32 H 1.09003 * 109.49840 * 65.32146 * 11 10 9 33 33 H 1.09003 * 109.45481 * 301.35745 * 12 11 10 34 34 H 0.97001 * 119.99992 * 334.97144 * 13 12 11 35 35 H 1.08005 * 120.86069 * 0.02562 * 15 14 13 36 36 H 1.09000 * 109.50501 * 297.54296 * 18 17 16 37 37 H 1.08997 * 109.50426 * 57.67116 * 18 17 16 38 38 H 1.09004 * 109.50370 * 296.91296 * 19 18 17 39 39 H 1.08995 * 109.53761 * 176.80500 * 19 18 17 40 40 H 1.08994 * 109.50023 * 298.73246 * 21 20 19 41 41 H 1.09002 * 109.54094 * 178.62936 * 21 20 19 42 42 H 1.08998 * 109.51116 * 302.32216 * 22 17 16 43 43 H 1.08996 * 109.50647 * 62.45935 * 22 17 16 44 44 H 1.08003 * 119.04006 * 179.97438 * 24 23 16 45 45 H 1.09002 * 109.49646 * 58.57505 * 26 12 11 46 46 H 1.08991 * 109.50206 * 178.67363 * 26 12 11 47 47 H 1.09006 * 109.58369 * 246.15317 * 27 9 7 48 48 H 1.08995 * 109.59236 * 6.43820 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 3.0552 -1.2223 -0.2729 9 7 1.3701 -2.3624 0.3446 10 6 0.2263 -2.3408 1.2665 11 6 0.4984 -3.3200 2.4128 12 6 0.8135 -4.7014 1.8344 13 7 1.0418 -5.6482 2.9288 14 6 0.8381 -7.0043 2.7259 15 6 0.4058 -7.4762 1.4901 16 6 0.2205 -8.8465 1.3361 17 7 -0.2041 -9.3669 0.1234 18 6 -1.4696 -8.7500 -0.3004 19 6 -1.8703 -9.3084 -1.6685 20 8 -1.9628 -10.7333 -1.5877 21 6 -0.7478 -11.3669 -1.1782 22 6 -0.3357 -10.8294 0.1948 23 7 0.4525 -9.6505 2.3723 24 6 0.8563 -9.1645 3.5282 25 7 1.0483 -7.8740 3.7122 26 6 2.0687 -4.6171 0.9631 27 6 1.8144 -3.6528 -0.1999 28 1 -0.4850 0.8400 0.0004 29 1 -0.6768 -2.6417 0.7355 30 1 0.0966 -1.3356 1.6676 31 1 -0.3820 -3.3853 3.0521 32 1 1.3482 -2.9681 2.9979 33 1 -0.0267 -5.0417 1.2291 34 1 1.3393 -5.3266 3.7942 35 1 0.2225 -6.7968 0.6708 36 1 -2.2477 -8.9783 0.4279 37 1 -1.3421 -7.6698 -0.3713 38 1 -1.1181 -9.0339 -2.4081 39 1 -2.8361 -8.8969 -1.9615 40 1 0.0369 -11.1523 -1.9036 41 1 -0.9013 -12.4443 -1.1163 42 1 0.6193 -11.2671 0.4853 43 1 -1.0957 -11.0909 0.9311 44 1 1.0351 -9.8435 4.3488 45 1 2.9035 -4.2528 1.5619 46 1 2.3062 -5.6057 0.5704 47 1 1.0407 -4.0607 -0.8504 48 1 2.7335 -3.5125 -0.7687 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000617950153.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:10:54 Heat of formation + Delta-G solvation = 46.324043 kcal Electronic energy + Delta-G solvation = -29239.214659 eV Core-core repulsion = 25330.207011 eV Total energy + Delta-G solvation = -3909.007649 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.25136 -39.63577 -38.25072 -36.46306 -35.37369 -32.93873 -31.80736 -31.68330 -30.85112 -29.95296 -29.14457 -27.42465 -25.41757 -24.60375 -23.49193 -22.90800 -22.20439 -21.64376 -20.69933 -19.50841 -18.23897 -17.83680 -16.83135 -16.39952 -16.08049 -15.70218 -15.47349 -15.25098 -15.07953 -15.05629 -14.70512 -14.44800 -14.19707 -13.99544 -13.83586 -13.66933 -13.20962 -12.96956 -12.68646 -12.43610 -11.90174 -11.73970 -11.66020 -11.48242 -11.20281 -11.11021 -10.96606 -10.78092 -10.70710 -10.49066 -10.43354 -10.28736 -10.05457 -9.90443 -9.75216 -9.70625 -9.22998 -8.70456 -8.56285 -7.97510 -6.78832 -5.88346 -3.30771 1.10499 1.44146 3.02319 3.22595 3.32579 3.39922 3.42091 3.55003 3.94332 4.17980 4.42594 4.51501 4.58621 4.71422 4.81202 4.83856 4.95472 5.03414 5.11925 5.22856 5.27812 5.35174 5.36489 5.38345 5.43371 5.47674 5.54372 5.60713 5.67050 5.69408 5.90312 6.02572 6.13118 6.24871 6.30991 6.36101 6.38672 6.47638 6.65989 6.78083 6.79141 6.83790 6.95905 7.19398 7.38229 7.51755 7.68731 7.72369 8.34591 8.35617 9.11721 9.74563 10.30490 11.20713 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.016215 B = 0.002767 C = 0.002480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1726.364759 B =10115.452445 C =11287.032742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.004 3.996 3 Si 0.902 3.098 4 H -0.286 1.286 5 H -0.289 1.289 6 H -0.279 1.279 7 C -0.255 4.255 8 H 0.066 0.934 9 N -0.592 5.592 10 C 0.175 3.825 11 C -0.146 4.146 12 C 0.157 3.843 13 N -0.700 5.700 14 C 0.456 3.544 15 C -0.306 4.306 16 C 0.376 3.624 17 N -0.474 5.474 18 C 0.023 3.977 19 C 0.064 3.936 20 O -0.385 6.385 21 C 0.059 3.941 22 C 0.032 3.968 23 N -0.602 5.602 24 C 0.357 3.643 25 N -0.599 5.599 26 C -0.145 4.145 27 C 0.148 3.852 28 H 0.255 0.745 29 H 0.021 0.979 30 H 0.093 0.907 31 H 0.056 0.944 32 H 0.062 0.938 33 H 0.076 0.924 34 H 0.405 0.595 35 H 0.143 0.857 36 H 0.056 0.944 37 H 0.099 0.901 38 H 0.065 0.935 39 H 0.106 0.894 40 H 0.060 0.940 41 H 0.102 0.898 42 H 0.097 0.903 43 H 0.061 0.939 44 H 0.192 0.808 45 H 0.063 0.937 46 H 0.053 0.947 47 H 0.019 0.981 48 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.404 -19.868 2.148 20.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.195 4.195 3 Si 0.732 3.268 4 H -0.213 1.213 5 H -0.215 1.215 6 H -0.205 1.205 7 C -0.384 4.384 8 H 0.084 0.916 9 N -0.314 5.314 10 C 0.049 3.951 11 C -0.186 4.186 12 C 0.053 3.947 13 N -0.329 5.329 14 C 0.213 3.787 15 C -0.338 4.338 16 C 0.140 3.860 17 N -0.192 5.192 18 C -0.103 4.103 19 C -0.014 4.014 20 O -0.303 6.303 21 C -0.018 4.018 22 C -0.095 4.095 23 N -0.328 5.328 24 C 0.065 3.935 25 N -0.326 5.326 26 C -0.186 4.186 27 C 0.021 3.979 28 H 0.065 0.935 29 H 0.039 0.961 30 H 0.111 0.889 31 H 0.075 0.925 32 H 0.081 0.919 33 H 0.094 0.906 34 H 0.240 0.760 35 H 0.161 0.839 36 H 0.074 0.926 37 H 0.117 0.883 38 H 0.084 0.916 39 H 0.124 0.876 40 H 0.079 0.921 41 H 0.121 0.879 42 H 0.115 0.885 43 H 0.079 0.921 44 H 0.208 0.792 45 H 0.082 0.918 46 H 0.072 0.928 47 H 0.037 0.963 48 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -2.252 -20.145 2.198 20.389 hybrid contribution 0.301 1.552 0.351 1.619 sum -1.951 -18.593 2.549 18.868 Atomic orbital electron populations 1.70008 1.05272 1.25671 1.53743 1.25049 0.95297 0.98477 1.00673 0.86305 0.79189 0.83541 0.77791 1.21316 1.21509 1.20466 1.19167 0.92616 0.84709 1.41948 0.91636 1.44079 1.35820 1.01654 1.49883 1.20745 0.88846 0.98016 0.87535 1.22550 1.00898 0.94200 1.00999 1.21178 0.97924 0.88520 0.87094 1.45091 1.70359 1.01621 1.15834 1.18389 0.85748 0.86117 0.88461 1.21521 1.16891 0.95625 0.99717 1.19588 0.89925 0.89301 0.87144 1.59082 1.29257 1.07292 1.23538 1.22981 0.88158 1.00907 0.98230 1.22722 1.02793 0.80934 0.94905 1.88003 1.34433 1.19270 1.88618 1.22796 0.87078 0.97695 0.94224 1.22675 1.03554 0.85492 0.97779 1.68285 1.23785 1.40056 1.00702 1.24343 0.87467 0.88722 0.92919 1.67983 1.26722 1.04170 1.33726 1.22507 0.97451 0.99605 0.99015 1.20871 0.97997 0.86612 0.92419 0.93525 0.96074 0.88879 0.92521 0.91889 0.90607 0.75955 0.83905 0.92557 0.88285 0.91640 0.87578 0.92126 0.87948 0.88488 0.92103 0.79184 0.91840 0.92792 0.96303 0.92371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.15 11.19 55.49 0.62 -24.53 16 2 C 0.00 0.10 4.92 -17.43 -0.09 0.01 16 3 Si 0.90 21.03 29.59 -169.99 -5.03 16.00 16 4 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 7 C -0.25 -6.71 9.58 -15.06 -0.14 -6.86 16 8 H 0.07 1.71 7.88 -52.49 -0.41 1.29 16 9 N -0.59 -13.94 2.99 -172.32 -0.52 -14.46 16 10 C 0.18 3.86 5.30 -3.71 -0.02 3.84 16 11 C -0.15 -2.52 5.55 -26.61 -0.15 -2.67 16 12 C 0.16 2.42 2.12 -67.89 -0.14 2.28 16 13 N -0.70 -9.89 5.23 -53.80 -0.28 -10.17 16 14 C 0.46 6.62 7.68 -154.72 -1.19 5.44 16 15 C -0.31 -4.27 8.06 -38.91 -0.31 -4.58 16 16 C 0.38 5.02 6.41 -154.71 -0.99 4.03 16 17 N -0.47 -5.48 4.75 -172.79 -0.82 -6.31 16 18 C 0.02 0.24 5.40 -3.71 -0.02 0.22 16 19 C 0.06 0.56 7.01 37.21 0.26 0.82 16 20 O -0.38 -3.93 10.83 -35.23 -0.38 -4.31 16 21 C 0.06 0.50 7.01 37.21 0.26 0.76 16 22 C 0.03 0.32 4.83 -3.71 -0.02 0.30 16 23 N -0.60 -7.89 8.87 -13.88 -0.12 -8.02 16 24 C 0.36 4.43 12.28 -92.24 -1.13 3.30 16 25 N -0.60 -8.48 10.47 -13.88 -0.15 -8.62 16 26 C -0.15 -2.40 5.62 -26.61 -0.15 -2.55 16 27 C 0.15 2.91 6.52 -3.71 -0.02 2.88 16 28 H 0.25 6.89 8.31 -40.82 -0.34 6.55 16 29 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.09 2.33 6.06 -51.93 -0.31 2.01 16 31 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 33 H 0.08 1.18 6.50 -51.93 -0.34 0.85 16 34 H 0.40 5.42 8.73 -40.82 -0.36 5.06 16 35 H 0.14 1.96 5.53 -52.48 -0.29 1.67 16 36 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.10 0.97 6.88 -51.93 -0.36 0.61 16 38 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.11 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 41 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.10 0.98 7.88 -51.93 -0.41 0.57 16 43 H 0.06 0.66 8.04 -51.93 -0.42 0.24 16 44 H 0.19 1.66 8.06 -52.48 -0.42 1.24 16 45 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 46 H 0.05 0.84 7.80 -51.93 -0.41 0.43 16 47 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 48 H 0.06 1.14 7.93 -51.93 -0.41 0.73 16 LS Contribution 374.56 15.07 5.64 5.64 Total: -1.00 -29.80 374.56 -12.39 -42.19 By element: Atomic # 1 Polarization: 12.86 SS G_CDS: -7.50 Total: 5.36 kcal Atomic # 6 Polarization: 11.08 SS G_CDS: -3.86 Total: 7.22 kcal Atomic # 7 Polarization: -70.84 SS G_CDS: -1.27 Total: -72.10 kcal Atomic # 8 Polarization: -3.93 SS G_CDS: -0.38 Total: -4.31 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.03 Total: 16.00 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -29.80 -12.39 -42.19 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000617950153.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.514 kcal (2) G-P(sol) polarization free energy of solvation -29.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.190 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds