Wall clock time and date at job start Tue Mar 31 2020 18:10:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86799 * 119.99944 * 2 1 4 4 H 1.48497 * 109.47257 * 270.00498 * 3 2 1 5 5 H 1.48505 * 109.47113 * 30.00193 * 3 2 1 6 6 H 1.48499 * 109.47259 * 150.00181 * 3 2 1 7 7 C 1.38817 * 120.00048 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00110 * 163.06816 * 7 2 1 9 9 N 1.36935 * 119.99460 * 343.05674 * 7 2 1 10 10 C 1.46924 * 120.63635 * 331.84443 * 9 7 2 11 11 C 1.53191 * 108.77411 * 233.62661 * 10 9 7 12 12 C 1.53040 * 109.31621 * 305.36741 * 11 10 9 13 13 N 1.46498 * 109.46074 * 181.38525 * 12 11 10 14 14 C 1.38625 * 120.00037 * 155.24741 * 13 12 11 15 15 C 1.39165 * 120.48778 * 359.44445 * 14 13 12 16 16 C 1.39131 * 118.27283 * 179.78685 * 15 14 13 17 17 N 1.38626 * 120.48643 * 180.24210 * 16 15 14 18 18 C 1.47021 * 111.00119 * 303.88741 * 17 16 15 19 19 C 1.53098 * 109.25819 * 177.60938 * 18 17 16 20 20 O 1.43012 * 109.26008 * 56.84538 * 19 18 17 21 21 C 1.43024 * 113.74132 * 301.33386 * 20 19 18 22 22 C 1.47015 * 110.99816 * 180.25077 * 17 16 15 23 23 N 1.33193 * 119.02457 * 0.48972 * 16 15 14 24 24 C 1.31731 * 120.88407 * 359.75156 * 23 16 15 25 25 N 1.31754 * 121.91038 * 359.97438 * 24 23 16 26 26 C 1.53035 * 109.52868 * 61.37064 * 12 11 10 27 27 C 1.46930 * 120.62159 * 151.86741 * 9 7 2 28 28 H 0.96997 * 120.00302 * 359.97438 * 1 2 3 29 29 H 1.09004 * 109.58531 * 113.84492 * 10 9 7 30 30 H 1.08992 * 109.70210 * 353.48762 * 10 9 7 31 31 H 1.09005 * 109.49625 * 185.41402 * 11 10 9 32 32 H 1.09003 * 109.49840 * 65.32146 * 11 10 9 33 33 H 1.09003 * 109.45481 * 301.35745 * 12 11 10 34 34 H 0.97001 * 119.99992 * 334.97144 * 13 12 11 35 35 H 1.08005 * 120.86069 * 0.02562 * 15 14 13 36 36 H 1.09000 * 109.50501 * 297.54296 * 18 17 16 37 37 H 1.08997 * 109.50426 * 57.67116 * 18 17 16 38 38 H 1.09004 * 109.50370 * 296.91296 * 19 18 17 39 39 H 1.08995 * 109.53761 * 176.80500 * 19 18 17 40 40 H 1.08994 * 109.50023 * 298.73246 * 21 20 19 41 41 H 1.09002 * 109.54094 * 178.62936 * 21 20 19 42 42 H 1.08998 * 109.51116 * 302.32216 * 22 17 16 43 43 H 1.08996 * 109.50647 * 62.45935 * 22 17 16 44 44 H 1.08003 * 119.04006 * 179.97438 * 24 23 16 45 45 H 1.09002 * 109.49646 * 58.57505 * 26 12 11 46 46 H 1.08991 * 109.50206 * 178.67363 * 26 12 11 47 47 H 1.09006 * 109.58369 * 246.15317 * 27 9 7 48 48 H 1.08995 * 109.59236 * 6.43820 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 3.0552 -1.2223 -0.2729 9 7 1.3701 -2.3624 0.3446 10 6 0.2263 -2.3408 1.2665 11 6 0.4984 -3.3200 2.4128 12 6 0.8135 -4.7014 1.8344 13 7 1.0418 -5.6482 2.9288 14 6 0.8381 -7.0043 2.7259 15 6 0.4058 -7.4762 1.4901 16 6 0.2205 -8.8465 1.3361 17 7 -0.2041 -9.3669 0.1234 18 6 -1.4696 -8.7500 -0.3004 19 6 -1.8703 -9.3084 -1.6685 20 8 -1.9628 -10.7333 -1.5877 21 6 -0.7478 -11.3669 -1.1782 22 6 -0.3357 -10.8294 0.1948 23 7 0.4525 -9.6505 2.3723 24 6 0.8563 -9.1645 3.5282 25 7 1.0483 -7.8740 3.7122 26 6 2.0687 -4.6171 0.9631 27 6 1.8144 -3.6528 -0.1999 28 1 -0.4850 0.8400 0.0004 29 1 -0.6768 -2.6417 0.7355 30 1 0.0966 -1.3356 1.6676 31 1 -0.3820 -3.3853 3.0521 32 1 1.3482 -2.9681 2.9979 33 1 -0.0267 -5.0417 1.2291 34 1 1.3393 -5.3266 3.7942 35 1 0.2225 -6.7968 0.6708 36 1 -2.2477 -8.9783 0.4279 37 1 -1.3421 -7.6698 -0.3713 38 1 -1.1181 -9.0339 -2.4081 39 1 -2.8361 -8.8969 -1.9615 40 1 0.0369 -11.1523 -1.9036 41 1 -0.9013 -12.4443 -1.1163 42 1 0.6193 -11.2671 0.4853 43 1 -1.0957 -11.0909 0.9311 44 1 1.0351 -9.8435 4.3488 45 1 2.9035 -4.2528 1.5619 46 1 2.3062 -5.6057 0.5704 47 1 1.0407 -4.0607 -0.8504 48 1 2.7335 -3.5125 -0.7687 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000617950153.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:10:53 Heat of formation + Delta-G solvation = 28.635766 kcal Electronic energy + Delta-G solvation = -29239.981681 eV Core-core repulsion = 25330.207011 eV Total energy + Delta-G solvation = -3909.774670 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.23025 -40.50987 -39.62505 -37.46275 -36.68441 -34.46231 -33.11031 -32.50071 -32.10338 -31.43515 -30.56969 -28.27064 -27.00782 -25.67560 -24.49178 -24.18411 -23.62135 -22.97064 -21.55313 -21.01638 -19.31986 -18.96821 -18.49480 -17.21301 -17.06574 -16.81982 -16.60731 -16.36702 -16.26843 -15.95206 -15.88330 -15.58744 -15.37619 -15.26661 -15.12342 -14.93074 -14.76999 -14.47863 -14.02365 -13.40785 -13.25446 -13.02029 -12.77332 -12.65508 -12.62242 -12.54034 -12.40167 -12.17553 -12.05870 -11.88110 -11.73026 -11.61986 -11.48707 -11.35028 -11.22030 -10.67468 -10.54891 -10.26040 -9.65089 -9.09156 -8.70661 -7.89336 -5.33623 0.10386 0.39214 1.46688 1.49127 1.57885 1.94718 2.28160 2.50985 2.87598 2.93065 3.27221 3.30685 3.58389 3.65978 3.79540 3.81820 3.85819 3.98460 4.01248 4.05610 4.12583 4.20376 4.27380 4.42726 4.43642 4.50770 4.56402 4.62692 4.69760 4.75167 4.78872 4.82535 4.87936 4.93075 4.94337 5.03161 5.13146 5.20475 5.30618 5.39445 5.46818 5.64019 5.68630 5.71857 5.96563 6.09958 6.31779 6.38863 6.61459 7.14407 7.32923 7.84440 8.35244 9.17527 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.016215 B = 0.002767 C = 0.002480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1726.364759 B =10115.452445 C =11287.032742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.046 4.046 3 Si 0.963 3.037 4 H -0.286 1.286 5 H -0.292 1.292 6 H -0.273 1.273 7 C -0.264 4.264 8 H 0.065 0.935 9 N -0.609 5.609 10 C 0.181 3.819 11 C -0.131 4.131 12 C 0.172 3.828 13 N -0.696 5.696 14 C 0.447 3.553 15 C -0.317 4.317 16 C 0.372 3.628 17 N -0.479 5.479 18 C 0.025 3.975 19 C 0.065 3.935 20 O -0.399 6.399 21 C 0.061 3.939 22 C 0.036 3.964 23 N -0.607 5.607 24 C 0.355 3.645 25 N -0.612 5.612 26 C -0.129 4.129 27 C 0.146 3.854 28 H 0.251 0.749 29 H 0.005 0.995 30 H 0.059 0.941 31 H 0.074 0.926 32 H 0.061 0.939 33 H 0.078 0.922 34 H 0.409 0.591 35 H 0.142 0.858 36 H 0.050 0.950 37 H 0.100 0.900 38 H 0.069 0.931 39 H 0.124 0.876 40 H 0.065 0.935 41 H 0.124 0.876 42 H 0.096 0.904 43 H 0.052 0.948 44 H 0.225 0.775 45 H 0.056 0.944 46 H 0.069 0.931 47 H 0.022 0.978 48 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.948 -21.548 2.462 21.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.242 4.242 3 Si 0.791 3.209 4 H -0.212 1.212 5 H -0.218 1.218 6 H -0.198 1.198 7 C -0.394 4.394 8 H 0.082 0.918 9 N -0.333 5.333 10 C 0.055 3.945 11 C -0.171 4.171 12 C 0.067 3.933 13 N -0.326 5.326 14 C 0.204 3.796 15 C -0.348 4.348 16 C 0.136 3.864 17 N -0.197 5.197 18 C -0.101 4.101 19 C -0.012 4.012 20 O -0.318 6.318 21 C -0.016 4.016 22 C -0.091 4.091 23 N -0.333 5.333 24 C 0.065 3.935 25 N -0.338 5.338 26 C -0.169 4.169 27 C 0.020 3.980 28 H 0.060 0.940 29 H 0.023 0.977 30 H 0.078 0.922 31 H 0.093 0.907 32 H 0.079 0.921 33 H 0.096 0.904 34 H 0.246 0.754 35 H 0.160 0.840 36 H 0.068 0.932 37 H 0.118 0.882 38 H 0.087 0.913 39 H 0.141 0.859 40 H 0.083 0.917 41 H 0.142 0.858 42 H 0.114 0.886 43 H 0.070 0.930 44 H 0.241 0.759 45 H 0.075 0.925 46 H 0.087 0.913 47 H 0.040 0.960 48 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -1.783 -21.871 2.517 22.088 hybrid contribution 0.159 1.954 0.219 1.972 sum -1.624 -19.918 2.736 20.170 Atomic orbital electron populations 1.70147 1.06485 1.25912 1.55212 1.25731 0.96014 1.01272 1.01166 0.85352 0.78117 0.79873 0.77540 1.21232 1.21845 1.19759 1.19461 0.92811 0.86006 1.41114 0.91777 1.44322 1.35963 1.02286 1.50730 1.20532 0.87996 0.97484 0.88500 1.22272 1.01642 0.93983 0.99174 1.20837 0.97402 0.87833 0.87198 1.44793 1.70856 1.01453 1.15505 1.18493 0.86086 0.86112 0.88890 1.21542 1.17605 0.96007 0.99626 1.19829 0.89527 0.89292 0.87741 1.59124 1.29788 1.08199 1.22583 1.23020 0.87295 1.01005 0.98792 1.22818 1.03874 0.80462 0.94051 1.87989 1.35302 1.19875 1.88614 1.22909 0.86725 0.98732 0.93207 1.22690 1.03213 0.84587 0.98592 1.68380 1.23937 1.40031 1.00913 1.25071 0.86218 0.88676 0.93574 1.68028 1.27304 1.04795 1.33723 1.22293 0.97652 0.99210 0.97790 1.20977 0.97725 0.85652 0.93654 0.94017 0.97732 0.92222 0.90719 0.92059 0.90423 0.75425 0.84002 0.93190 0.88220 0.91303 0.85860 0.91699 0.85798 0.88574 0.93003 0.75857 0.92524 0.91286 0.96031 0.92671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.11 11.19 21.65 0.24 -52.87 16 2 C -0.05 -2.49 4.92 84.86 0.42 -2.08 16 3 Si 0.96 43.69 29.59 68.60 2.03 45.72 16 4 H -0.29 -12.82 7.11 99.48 0.71 -12.12 16 5 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 6 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 7 C -0.26 -14.02 9.58 84.03 0.81 -13.21 16 8 H 0.06 3.35 7.88 -2.91 -0.02 3.33 16 9 N -0.61 -28.96 2.99 -699.09 -2.09 -31.06 16 10 C 0.18 8.11 5.30 86.36 0.46 8.57 16 11 C -0.13 -4.41 5.55 30.67 0.17 -4.24 16 12 C 0.17 5.09 2.12 45.02 0.10 5.19 16 13 N -0.70 -18.51 5.23 -324.14 -1.70 -20.20 16 14 C 0.45 12.25 7.68 132.97 1.02 13.27 16 15 C -0.32 -8.39 8.06 22.71 0.18 -8.20 16 16 C 0.37 9.41 6.41 132.95 0.85 10.26 16 17 N -0.48 -10.44 4.75 -700.57 -3.33 -13.77 16 18 C 0.02 0.47 5.40 86.31 0.47 0.94 16 19 C 0.06 1.04 7.01 72.01 0.50 1.54 16 20 O -0.40 -7.44 10.83 -148.98 -1.61 -9.06 16 21 C 0.06 0.92 7.01 72.02 0.50 1.43 16 22 C 0.04 0.67 4.83 86.31 0.42 1.09 16 23 N -0.61 -14.82 8.87 -197.84 -1.76 -16.57 16 24 C 0.36 8.04 12.28 180.91 2.22 10.26 16 25 N -0.61 -16.13 10.47 -197.83 -2.07 -18.20 16 26 C -0.13 -4.09 5.62 30.67 0.17 -3.92 16 27 C 0.15 5.67 6.52 86.36 0.56 6.23 16 28 H 0.25 13.88 8.31 -92.71 -0.77 13.11 16 29 H 0.00 0.22 8.14 -2.39 -0.02 0.20 16 30 H 0.06 3.07 6.06 -2.39 -0.01 3.06 16 31 H 0.07 2.25 8.14 -2.38 -0.02 2.23 16 32 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 33 H 0.08 2.32 6.50 -2.39 -0.02 2.31 16 34 H 0.41 10.23 8.73 -92.71 -0.81 9.42 16 35 H 0.14 3.72 5.53 -2.91 -0.02 3.70 16 36 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 37 H 0.10 1.86 6.88 -2.39 -0.02 1.84 16 38 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 39 H 0.12 1.52 8.14 -2.39 -0.02 1.50 16 40 H 0.06 0.93 8.14 -2.39 -0.02 0.92 16 41 H 0.12 1.31 8.14 -2.39 -0.02 1.29 16 42 H 0.10 1.79 7.88 -2.39 -0.02 1.77 16 43 H 0.05 1.06 8.04 -2.39 -0.02 1.04 16 44 H 0.23 3.25 8.06 -2.91 -0.02 3.22 16 45 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 46 H 0.07 2.01 7.80 -2.39 -0.02 1.99 16 47 H 0.02 0.83 8.14 -2.38 -0.02 0.81 16 48 H 0.05 2.14 7.93 -2.39 -0.02 2.12 16 Total: -1.00 -63.71 374.56 -1.27 -64.98 By element: Atomic # 1 Polarization: 23.76 SS G_CDS: 0.16 Total: 23.93 kcal Atomic # 6 Polarization: 18.26 SS G_CDS: 8.85 Total: 27.11 kcal Atomic # 7 Polarization: -141.98 SS G_CDS: -10.70 Total: -152.68 kcal Atomic # 8 Polarization: -7.44 SS G_CDS: -1.61 Total: -9.06 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.72 kcal Total: -63.71 -1.27 -64.98 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000617950153.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.616 kcal (2) G-P(sol) polarization free energy of solvation -63.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.980 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds