Wall clock time and date at job start Tue Mar 31 2020 18:04:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86804 * 119.99953 * 2 1 4 4 H 1.48497 * 109.47478 * 240.00323 * 3 2 1 5 5 H 1.48497 * 109.46895 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47229 * 120.00210 * 3 2 1 7 7 C 1.37872 * 120.00268 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00272 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99898 * 0.27445 * 7 2 1 10 10 N 1.46503 * 109.47177 * 179.72312 * 9 7 2 11 11 C 1.34772 * 120.00045 * 180.02562 * 10 9 7 12 12 O 1.21283 * 119.99903 * 359.97438 * 11 10 9 13 13 C 1.50698 * 119.99950 * 180.02562 * 11 10 9 14 14 N 1.46908 * 109.47120 * 173.73160 * 13 11 10 15 15 C 1.46848 * 111.00031 * 169.39807 * 14 13 11 16 16 C 1.53030 * 109.52045 * 185.83809 * 15 14 13 17 17 C 1.53121 * 109.28311 * 300.81715 * 16 15 14 18 18 C 1.53119 * 109.15625 * 57.65303 * 17 16 15 19 19 H 1.09005 * 109.50387 * 62.29143 * 18 17 16 20 20 C 1.50701 * 109.50146 * 182.40577 * 18 17 16 21 21 N 1.30712 * 125.52369 * 59.50437 * 20 18 17 22 22 N 1.40452 * 106.79206 * 179.85546 * 21 20 18 23 23 H 0.96996 * 126.82528 * 180.15683 * 22 21 20 24 24 C 1.34438 * 106.35114 * 0.39858 * 22 21 20 25 25 C 1.50695 * 125.95889 * 179.77520 * 24 22 21 26 26 C 1.53003 * 117.50044 * 33.60136 * 25 24 22 27 27 C 1.52998 * 59.99955 * 252.50890 * 26 25 24 28 28 N 1.30831 * 108.07466 * 359.75420 * 24 22 21 29 29 C 1.46846 * 110.99487 * 293.60540 * 14 13 11 30 30 H 0.97001 * 120.00251 * 359.97438 * 1 2 3 31 31 H 1.08997 * 109.47058 * 299.72571 * 9 7 2 32 32 H 1.09000 * 109.47291 * 59.72396 * 9 7 2 33 33 H 0.97001 * 119.99645 * 359.97438 * 10 9 7 34 34 H 1.09004 * 109.46897 * 293.72690 * 13 11 10 35 35 H 1.08995 * 109.47320 * 53.73226 * 13 11 10 36 36 H 1.08998 * 109.45815 * 305.84990 * 15 14 13 37 37 H 1.08992 * 109.46289 * 65.81909 * 15 14 13 38 38 H 1.09004 * 109.50232 * 180.87549 * 16 15 14 39 39 H 1.09005 * 109.54082 * 60.78057 * 16 15 14 40 40 H 1.08997 * 109.52049 * 297.75803 * 17 16 15 41 41 H 1.08997 * 109.52866 * 177.56259 * 17 16 15 42 42 H 1.09003 * 115.54759 * 179.29895 * 25 24 22 43 43 H 1.09002 * 117.49385 * 359.97438 * 26 25 24 44 44 H 1.08998 * 117.50182 * 145.01793 * 26 25 24 45 45 H 1.09004 * 117.49739 * 252.51290 * 27 26 25 46 46 H 1.08993 * 117.50642 * 107.48724 * 27 26 25 47 47 H 1.09003 * 109.46642 * 294.17598 * 29 14 13 48 48 H 1.09002 * 109.46552 * 54.15049 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6966 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0074 10 7 2.2032 -3.6126 -0.0133 11 6 1.7540 -4.8832 -0.0204 12 8 0.5616 -5.1049 -0.0216 13 6 2.7333 -6.0286 -0.0259 14 7 2.0050 -7.2963 0.1179 15 6 2.8884 -8.4422 -0.1332 16 6 2.0675 -9.7336 -0.1183 17 6 1.3829 -9.8819 1.2433 18 6 0.5068 -8.6531 1.5017 19 1 -0.2733 -8.5961 0.7425 20 6 -0.1246 -8.7632 2.8656 21 7 0.5231 -8.8575 3.9971 22 7 -0.4437 -8.9349 5.0129 23 1 -0.2807 -9.0105 5.9661 24 6 -1.6399 -8.8890 4.4012 25 6 -2.9839 -8.9458 5.0804 26 6 -3.1044 -8.3024 6.4633 27 6 -3.1096 -9.8261 6.3254 28 7 -1.4336 -8.7859 3.1133 29 6 1.3729 -7.3929 1.4399 30 1 -0.4850 0.8400 0.0004 31 1 0.6245 -2.5615 0.8823 32 1 0.6244 -2.5522 -0.8976 33 1 3.1568 -3.4353 -0.0127 34 1 3.2844 -6.0309 -0.9664 35 1 3.4309 -5.9142 0.8037 36 1 3.3656 -8.3263 -1.1063 37 1 3.6525 -8.4885 0.6426 38 1 2.7259 -10.5853 -0.2893 39 1 1.3120 -9.6944 -0.9031 40 1 2.1390 -9.9609 2.0244 41 1 0.7626 -10.7782 1.2435 42 1 -3.8480 -8.8831 4.4189 43 1 -2.2113 -7.8384 6.8820 44 1 -4.0477 -7.8162 6.7118 45 1 -4.0566 -10.3425 6.4832 46 1 -2.2203 -10.3643 6.6531 47 1 2.1442 -7.4442 2.2084 48 1 0.7493 -6.5150 1.6093 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000766256519.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:04:20 Heat of formation + Delta-G solvation = 70.616859 kcal Electronic energy + Delta-G solvation = -28251.570154 eV Core-core repulsion = 24343.615921 eV Total energy + Delta-G solvation = -3907.954233 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.37713 -39.52067 -38.08667 -37.57086 -34.24250 -33.88910 -32.56523 -32.25512 -31.73272 -29.81558 -28.30080 -26.35729 -24.84624 -23.97503 -23.43610 -22.97228 -22.12261 -20.85830 -20.59284 -19.55058 -19.36808 -18.12626 -17.02781 -16.35997 -16.11072 -15.72750 -15.54915 -15.20635 -14.95885 -14.76685 -14.56812 -14.25979 -14.05713 -13.74457 -13.40740 -13.18660 -12.94851 -12.60464 -12.29682 -12.17819 -12.06885 -12.03079 -11.84340 -11.56018 -11.34039 -11.33202 -11.11493 -10.96995 -10.86945 -10.85085 -10.62915 -10.53695 -10.27943 -10.09446 -10.05606 -9.42194 -9.37000 -8.91888 -8.68739 -8.14789 -7.78699 -6.12969 -4.19877 1.35633 2.40309 2.64318 3.27044 3.31644 3.33201 3.41059 3.47669 3.47821 3.76328 4.18088 4.22927 4.36076 4.36197 4.51687 4.67654 4.73551 4.82765 4.95535 4.99836 5.04208 5.22610 5.23493 5.31825 5.36767 5.45341 5.48378 5.52490 5.54493 5.56720 5.63885 5.67369 5.75546 5.85987 5.97888 6.01891 6.12918 6.25545 6.26711 6.43723 6.83890 7.04268 7.19023 7.38436 7.52015 7.57868 7.72427 8.00174 8.01695 8.70222 8.84085 9.20548 9.46953 10.97190 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.009987 B = 0.002687 C = 0.002201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2802.926439 B =10417.534173 C =12717.352106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.063 3.937 3 Si 0.903 3.097 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.276 1.276 7 C -0.543 4.543 8 H 0.062 0.938 9 C 0.252 3.748 10 N -0.717 5.717 11 C 0.496 3.504 12 O -0.534 6.534 13 C 0.037 3.963 14 N -0.517 5.517 15 C 0.054 3.946 16 C -0.113 4.113 17 C -0.110 4.110 18 C 0.011 3.989 19 H 0.110 0.890 20 C 0.247 3.753 21 N -0.311 5.311 22 N -0.486 5.486 23 H 0.436 0.564 24 C 0.314 3.686 25 C -0.084 4.084 26 C -0.164 4.164 27 C -0.165 4.165 28 N -0.526 5.526 29 C 0.067 3.933 30 H 0.266 0.734 31 H 0.025 0.975 32 H 0.027 0.973 33 H 0.389 0.611 34 H 0.101 0.899 35 H 0.056 0.944 36 H 0.077 0.923 37 H 0.033 0.967 38 H 0.070 0.930 39 H 0.076 0.924 40 H 0.065 0.935 41 H 0.065 0.935 42 H 0.144 0.856 43 H 0.097 0.903 44 H 0.113 0.887 45 H 0.112 0.888 46 H 0.096 0.904 47 H 0.034 0.966 48 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.728 -23.222 10.541 25.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.140 4.140 3 Si 0.730 3.270 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.581 4.581 8 H 0.080 0.920 9 C 0.131 3.869 10 N -0.366 5.366 11 C 0.280 3.720 12 O -0.412 6.412 13 C -0.094 4.094 14 N -0.241 5.241 15 C -0.074 4.074 16 C -0.151 4.151 17 C -0.148 4.148 18 C -0.010 4.010 19 H 0.128 0.872 20 C -0.036 4.036 21 N -0.139 5.139 22 N -0.204 5.204 23 H 0.281 0.719 24 C 0.036 3.964 25 C -0.105 4.105 26 C -0.202 4.202 27 C -0.203 4.203 28 N -0.254 5.254 29 C -0.062 4.062 30 H 0.076 0.924 31 H 0.043 0.957 32 H 0.045 0.955 33 H 0.221 0.779 34 H 0.119 0.881 35 H 0.074 0.926 36 H 0.096 0.904 37 H 0.051 0.949 38 H 0.088 0.912 39 H 0.095 0.905 40 H 0.084 0.916 41 H 0.083 0.917 42 H 0.162 0.838 43 H 0.115 0.885 44 H 0.132 0.868 45 H 0.130 0.870 46 H 0.114 0.886 47 H 0.052 0.948 48 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -0.144 -23.214 9.905 25.239 hybrid contribution 1.508 1.122 1.403 2.346 sum 1.364 -22.091 11.308 24.855 Atomic orbital electron populations 1.69969 1.06090 1.27354 1.48867 1.24952 0.94906 0.99404 0.94768 0.86485 0.79417 0.82401 0.78654 1.20053 1.21079 1.20135 1.21201 0.93202 0.90533 1.53210 0.92002 1.19058 0.88271 0.81885 0.97646 1.46456 1.10993 1.06140 1.73042 1.20322 0.89659 0.84055 0.77986 1.90664 1.16530 1.84536 1.49438 1.21999 0.95200 0.89440 1.02750 1.61453 1.31799 1.00585 1.30271 1.22150 0.93875 0.90510 1.00899 1.21556 0.99685 0.96427 0.97434 1.21618 0.98627 0.96704 0.97892 1.19557 0.97740 0.95693 0.88028 0.87235 1.24154 0.87500 0.96512 0.95404 1.77993 1.12664 1.27193 0.96044 1.47901 1.04237 1.58008 1.10233 0.71917 1.23224 0.88558 0.95890 0.88740 1.20427 0.91969 1.07428 0.90711 1.23156 1.04770 0.95559 0.96718 1.23140 1.04471 0.93684 0.99029 1.70349 1.17514 1.24439 1.13072 1.22111 0.97165 0.98365 0.88526 0.92419 0.95740 0.95537 0.77909 0.88066 0.92616 0.90431 0.94906 0.91169 0.90505 0.91613 0.91666 0.83824 0.88451 0.86818 0.86967 0.88594 0.94815 0.88688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.52 13.29 55.43 0.74 -25.79 16 2 C 0.06 1.78 5.46 -17.82 -0.10 1.69 16 3 Si 0.90 21.12 29.54 -169.99 -5.02 16.10 16 4 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 5 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 6 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 7 C -0.54 -14.99 9.28 -34.44 -0.32 -15.31 16 8 H 0.06 1.59 7.60 -52.48 -0.40 1.19 16 9 C 0.25 6.85 5.43 -5.19 -0.03 6.82 16 10 N -0.72 -15.46 5.55 -61.47 -0.34 -15.80 16 11 C 0.50 10.21 7.36 -10.99 -0.08 10.13 16 12 O -0.53 -13.27 14.71 5.55 0.08 -13.18 16 13 C 0.04 0.56 5.45 -4.97 -0.03 0.53 16 14 N -0.52 -7.70 4.35 -236.11 -1.03 -8.73 16 15 C 0.05 0.60 5.46 -3.84 -0.02 0.58 16 16 C -0.11 -1.14 6.09 -26.65 -0.16 -1.30 16 17 C -0.11 -1.24 5.27 -26.61 -0.14 -1.39 16 18 C 0.01 0.16 2.82 -91.69 -0.26 -0.10 16 19 H 0.11 1.72 8.14 -51.93 -0.42 1.30 16 20 C 0.25 3.77 6.65 -156.85 -1.04 2.72 16 21 N -0.31 -4.42 12.80 32.42 0.41 -4.01 16 22 N -0.49 -5.37 7.39 32.62 0.24 -5.13 16 23 H 0.44 3.19 8.96 -182.33 -1.63 1.56 16 24 C 0.31 3.74 7.67 -155.69 -1.19 2.54 16 25 C -0.08 -0.67 6.33 -91.77 -0.58 -1.25 16 26 C -0.16 -0.91 10.21 -26.73 -0.27 -1.18 16 27 C -0.16 -0.80 10.22 -26.73 -0.27 -1.07 16 28 N -0.53 -8.10 11.19 -8.16 -0.09 -8.19 16 29 C 0.07 1.07 4.38 -3.83 -0.02 1.05 16 30 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 31 H 0.02 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 33 H 0.39 7.14 8.32 -40.82 -0.34 6.80 16 34 H 0.10 1.28 7.98 -51.93 -0.41 0.86 16 35 H 0.06 0.74 8.12 -51.93 -0.42 0.32 16 36 H 0.08 0.76 8.01 -51.93 -0.42 0.35 16 37 H 0.03 0.35 8.14 -51.93 -0.42 -0.08 16 38 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 40 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 42 H 0.14 1.10 8.14 -51.93 -0.42 0.68 16 43 H 0.10 0.53 8.14 -51.93 -0.42 0.10 16 44 H 0.11 0.51 8.14 -51.93 -0.42 0.08 16 45 H 0.11 0.39 8.14 -51.93 -0.42 -0.04 16 46 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 47 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 48 H 0.09 1.89 6.06 -51.93 -0.31 1.57 16 LS Contribution 395.53 15.07 5.96 5.96 Total: -1.00 -36.02 395.53 -12.55 -48.58 By element: Atomic # 1 Polarization: 14.71 SS G_CDS: -8.99 Total: 5.72 kcal Atomic # 6 Polarization: 8.99 SS G_CDS: -4.52 Total: 4.47 kcal Atomic # 7 Polarization: -67.57 SS G_CDS: -0.07 Total: -67.64 kcal Atomic # 8 Polarization: -13.27 SS G_CDS: 0.08 Total: -13.18 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -36.02 -12.55 -48.58 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000766256519.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.194 kcal (2) G-P(sol) polarization free energy of solvation -36.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.577 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds