Wall clock time and date at job start Tue Mar 31 2020 18:04:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86804 * 119.99953 * 2 1 4 4 H 1.48497 * 109.47478 * 240.00323 * 3 2 1 5 5 H 1.48497 * 109.46895 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47229 * 120.00210 * 3 2 1 7 7 C 1.37872 * 120.00268 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00272 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99898 * 0.27445 * 7 2 1 10 10 N 1.46503 * 109.47177 * 179.72312 * 9 7 2 11 11 C 1.34772 * 120.00045 * 180.02562 * 10 9 7 12 12 O 1.21283 * 119.99903 * 359.97438 * 11 10 9 13 13 C 1.50698 * 119.99950 * 180.02562 * 11 10 9 14 14 N 1.46908 * 109.47120 * 173.73160 * 13 11 10 15 15 C 1.46848 * 111.00031 * 169.39807 * 14 13 11 16 16 C 1.53030 * 109.52045 * 185.83809 * 15 14 13 17 17 C 1.53121 * 109.28311 * 300.81715 * 16 15 14 18 18 C 1.53119 * 109.15625 * 57.65303 * 17 16 15 19 19 H 1.09005 * 109.50387 * 62.29143 * 18 17 16 20 20 C 1.50701 * 109.50146 * 182.40577 * 18 17 16 21 21 N 1.30712 * 125.52369 * 59.50437 * 20 18 17 22 22 N 1.40452 * 106.79206 * 179.85546 * 21 20 18 23 23 H 0.96996 * 126.82528 * 180.15683 * 22 21 20 24 24 C 1.34438 * 106.35114 * 0.39858 * 22 21 20 25 25 C 1.50695 * 125.95889 * 179.77520 * 24 22 21 26 26 C 1.53003 * 117.50044 * 33.60136 * 25 24 22 27 27 C 1.52998 * 59.99955 * 252.50890 * 26 25 24 28 28 N 1.30831 * 108.07466 * 359.75420 * 24 22 21 29 29 C 1.46846 * 110.99487 * 293.60540 * 14 13 11 30 30 H 0.97001 * 120.00251 * 359.97438 * 1 2 3 31 31 H 1.08997 * 109.47058 * 299.72571 * 9 7 2 32 32 H 1.09000 * 109.47291 * 59.72396 * 9 7 2 33 33 H 0.97001 * 119.99645 * 359.97438 * 10 9 7 34 34 H 1.09004 * 109.46897 * 293.72690 * 13 11 10 35 35 H 1.08995 * 109.47320 * 53.73226 * 13 11 10 36 36 H 1.08998 * 109.45815 * 305.84990 * 15 14 13 37 37 H 1.08992 * 109.46289 * 65.81909 * 15 14 13 38 38 H 1.09004 * 109.50232 * 180.87549 * 16 15 14 39 39 H 1.09005 * 109.54082 * 60.78057 * 16 15 14 40 40 H 1.08997 * 109.52049 * 297.75803 * 17 16 15 41 41 H 1.08997 * 109.52866 * 177.56259 * 17 16 15 42 42 H 1.09003 * 115.54759 * 179.29895 * 25 24 22 43 43 H 1.09002 * 117.49385 * 359.97438 * 26 25 24 44 44 H 1.08998 * 117.50182 * 145.01793 * 26 25 24 45 45 H 1.09004 * 117.49739 * 252.51290 * 27 26 25 46 46 H 1.08993 * 117.50642 * 107.48724 * 27 26 25 47 47 H 1.09003 * 109.46642 * 294.17598 * 29 14 13 48 48 H 1.09002 * 109.46552 * 54.15049 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6966 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0074 10 7 2.2032 -3.6126 -0.0133 11 6 1.7540 -4.8832 -0.0204 12 8 0.5616 -5.1049 -0.0216 13 6 2.7333 -6.0286 -0.0259 14 7 2.0050 -7.2963 0.1179 15 6 2.8884 -8.4422 -0.1332 16 6 2.0675 -9.7336 -0.1183 17 6 1.3829 -9.8819 1.2433 18 6 0.5068 -8.6531 1.5017 19 1 -0.2733 -8.5961 0.7425 20 6 -0.1246 -8.7632 2.8656 21 7 0.5231 -8.8575 3.9971 22 7 -0.4437 -8.9349 5.0129 23 1 -0.2807 -9.0105 5.9661 24 6 -1.6399 -8.8890 4.4012 25 6 -2.9839 -8.9458 5.0804 26 6 -3.1044 -8.3024 6.4633 27 6 -3.1096 -9.8261 6.3254 28 7 -1.4336 -8.7859 3.1133 29 6 1.3729 -7.3929 1.4399 30 1 -0.4850 0.8400 0.0004 31 1 0.6245 -2.5615 0.8823 32 1 0.6244 -2.5522 -0.8976 33 1 3.1568 -3.4353 -0.0127 34 1 3.2844 -6.0309 -0.9664 35 1 3.4309 -5.9142 0.8037 36 1 3.3656 -8.3263 -1.1063 37 1 3.6525 -8.4885 0.6426 38 1 2.7259 -10.5853 -0.2893 39 1 1.3120 -9.6944 -0.9031 40 1 2.1390 -9.9609 2.0244 41 1 0.7626 -10.7782 1.2435 42 1 -3.8480 -8.8831 4.4189 43 1 -2.2113 -7.8384 6.8820 44 1 -4.0477 -7.8162 6.7118 45 1 -4.0566 -10.3425 6.4832 46 1 -2.2203 -10.3643 6.6531 47 1 2.1442 -7.4442 2.2084 48 1 0.7493 -6.5150 1.6093 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000766256519.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:04:19 Heat of formation + Delta-G solvation = 43.750625 kcal Electronic energy + Delta-G solvation = -28252.735162 eV Core-core repulsion = 24343.615921 eV Total energy + Delta-G solvation = -3909.119240 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.37402 -40.91647 -39.44039 -38.21959 -36.13149 -35.12129 -34.33072 -33.57572 -32.72468 -30.83086 -30.04549 -28.00908 -25.70489 -24.99444 -24.92465 -23.78147 -23.38219 -21.72983 -21.61216 -21.28949 -20.40835 -19.01169 -18.90247 -17.52493 -17.34511 -17.04243 -16.76862 -16.68417 -16.42060 -15.93581 -15.69169 -15.43708 -15.35405 -15.07785 -14.58474 -14.27458 -14.13413 -14.05260 -13.87920 -13.79301 -13.20039 -12.92458 -12.89377 -12.85694 -12.64863 -12.54441 -12.39506 -12.24610 -12.17218 -11.78689 -11.68593 -11.62501 -11.52184 -11.47961 -11.17157 -11.10735 -10.79550 -10.62491 -10.33716 -9.80295 -9.28088 -8.29514 -6.46839 0.40087 1.41643 1.46371 1.54062 1.54549 1.63265 1.81817 2.26864 2.44415 2.66941 2.87671 3.04817 3.08010 3.40254 3.62999 3.70820 3.78553 3.91249 3.92334 4.02186 4.11007 4.20187 4.26939 4.29517 4.34744 4.47540 4.62602 4.66066 4.69161 4.74256 4.89318 4.95239 4.96064 4.99920 5.06276 5.10742 5.11157 5.13341 5.19534 5.23218 5.28855 5.44317 5.48862 5.70146 5.84294 5.92513 6.05068 6.15501 6.64497 6.96493 6.99041 7.23014 7.55499 8.82678 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.009987 B = 0.002687 C = 0.002201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2802.926439 B =10417.534173 C =12717.352106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.002 3.998 3 Si 0.987 3.013 4 H -0.260 1.260 5 H -0.285 1.285 6 H -0.262 1.262 7 C -0.557 4.557 8 H 0.085 0.915 9 C 0.270 3.730 10 N -0.711 5.711 11 C 0.490 3.510 12 O -0.584 6.584 13 C 0.051 3.949 14 N -0.537 5.537 15 C 0.052 3.948 16 C -0.109 4.109 17 C -0.099 4.099 18 C 0.014 3.986 19 H 0.084 0.916 20 C 0.231 3.769 21 N -0.327 5.327 22 N -0.475 5.475 23 H 0.452 0.548 24 C 0.319 3.681 25 C -0.116 4.116 26 C -0.155 4.155 27 C -0.138 4.138 28 N -0.574 5.574 29 C 0.081 3.919 30 H 0.269 0.731 31 H -0.020 1.020 32 H -0.015 1.015 33 H 0.408 0.592 34 H 0.137 0.863 35 H 0.083 0.917 36 H 0.100 0.900 37 H 0.047 0.953 38 H 0.103 0.897 39 H 0.068 0.932 40 H 0.069 0.931 41 H 0.070 0.930 42 H 0.141 0.859 43 H 0.099 0.901 44 H 0.127 0.873 45 H 0.132 0.868 46 H 0.105 0.895 47 H 0.038 0.962 48 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.440 -24.264 11.435 27.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.198 4.198 3 Si 0.809 3.191 4 H -0.184 1.184 5 H -0.211 1.211 6 H -0.187 1.187 7 C -0.594 4.594 8 H 0.103 0.897 9 C 0.147 3.853 10 N -0.362 5.362 11 C 0.277 3.723 12 O -0.464 6.464 13 C -0.080 4.080 14 N -0.262 5.262 15 C -0.074 4.074 16 C -0.146 4.146 17 C -0.138 4.138 18 C -0.008 4.008 19 H 0.103 0.897 20 C -0.052 4.052 21 N -0.156 5.156 22 N -0.194 5.194 23 H 0.301 0.699 24 C 0.042 3.958 25 C -0.137 4.137 26 C -0.194 4.194 27 C -0.176 4.176 28 N -0.303 5.303 29 C -0.049 4.049 30 H 0.077 0.923 31 H -0.002 1.002 32 H 0.003 0.997 33 H 0.244 0.756 34 H 0.155 0.845 35 H 0.100 0.900 36 H 0.118 0.882 37 H 0.066 0.934 38 H 0.121 0.879 39 H 0.086 0.914 40 H 0.087 0.913 41 H 0.089 0.911 42 H 0.158 0.842 43 H 0.117 0.883 44 H 0.145 0.855 45 H 0.151 0.849 46 H 0.123 0.877 47 H 0.056 0.944 48 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 2.630 -24.300 10.825 26.731 hybrid contribution 0.546 1.389 1.189 1.908 sum 3.176 -22.911 12.014 26.064 Atomic orbital electron populations 1.70148 1.08372 1.28636 1.49936 1.26114 0.95786 1.04043 0.93825 0.85185 0.77890 0.76441 0.79561 1.18447 1.21077 1.18662 1.21602 0.94331 0.90537 1.52960 0.89690 1.18465 0.88674 0.84476 0.93679 1.46193 1.11110 1.05518 1.73412 1.21463 0.90124 0.84848 0.75876 1.90649 1.19335 1.85252 1.51190 1.21962 0.93488 0.86928 1.05600 1.61418 1.33448 1.01818 1.29502 1.22314 0.93601 0.89000 1.02491 1.21585 0.99832 0.97201 0.96016 1.21565 0.98167 0.95106 0.98951 1.19504 0.97316 0.96621 0.87321 0.89742 1.24314 0.87787 0.97105 0.95972 1.77862 1.13690 1.27816 0.96260 1.47781 1.03566 1.57396 1.10672 0.69947 1.23853 0.89972 0.93860 0.88081 1.20614 0.89782 1.11422 0.91874 1.23291 1.05561 0.96543 0.93968 1.23288 1.05889 0.93330 0.95125 1.70317 1.18040 1.26589 1.15342 1.21825 0.96681 0.96893 0.89468 0.92253 1.00164 0.99686 0.75631 0.84500 0.89960 0.88212 0.93431 0.87883 0.91364 0.91269 0.91107 0.84150 0.88284 0.85462 0.84948 0.87669 0.94440 0.93808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.82 13.29 21.45 0.28 -57.54 16 2 C 0.00 0.10 5.46 84.65 0.46 0.56 16 3 Si 0.99 43.08 29.54 68.60 2.03 45.11 16 4 H -0.26 -10.68 7.11 99.48 0.71 -9.98 16 5 H -0.29 -12.36 7.11 99.48 0.71 -11.65 16 6 H -0.26 -10.82 7.11 99.48 0.71 -10.11 16 7 C -0.56 -31.10 9.28 25.60 0.24 -30.87 16 8 H 0.09 4.25 7.60 -2.91 -0.02 4.23 16 9 C 0.27 15.47 5.43 85.63 0.46 15.94 16 10 N -0.71 -31.38 5.55 -466.79 -2.59 -33.97 16 11 C 0.49 20.78 7.36 87.66 0.65 21.43 16 12 O -0.58 -31.04 14.71 -3.04 -0.04 -31.08 16 13 C 0.05 1.45 5.45 85.56 0.47 1.92 16 14 N -0.54 -15.68 4.35 -900.93 -3.92 -19.59 16 15 C 0.05 1.02 5.46 86.32 0.47 1.49 16 16 C -0.11 -1.94 6.09 30.64 0.19 -1.75 16 17 C -0.10 -2.18 5.27 30.67 0.16 -2.02 16 18 C 0.01 0.42 2.82 -11.49 -0.03 0.39 16 19 H 0.08 2.91 8.14 -2.38 -0.02 2.90 16 20 C 0.23 7.44 6.65 138.63 0.92 8.37 16 21 N -0.33 -9.54 12.80 -51.33 -0.66 -10.20 16 22 N -0.47 -10.54 7.39 -50.71 -0.37 -10.91 16 23 H 0.45 6.28 8.96 -213.10 -1.91 4.37 16 24 C 0.32 7.86 7.67 138.22 1.06 8.92 16 25 C -0.12 -1.82 6.33 -11.54 -0.07 -1.89 16 26 C -0.16 -1.51 10.21 30.59 0.31 -1.19 16 27 C -0.14 -1.05 10.22 30.59 0.31 -0.74 16 28 N -0.57 -18.86 11.19 -179.73 -2.01 -20.87 16 29 C 0.08 2.67 4.38 86.33 0.38 3.05 16 30 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 31 H -0.02 -1.27 8.14 -2.39 -0.02 -1.29 16 32 H -0.01 -0.96 8.14 -2.39 -0.02 -0.98 16 33 H 0.41 14.63 8.32 -92.71 -0.77 13.86 16 34 H 0.14 2.98 7.98 -2.38 -0.02 2.96 16 35 H 0.08 1.97 8.12 -2.39 -0.02 1.95 16 36 H 0.10 1.55 8.01 -2.39 -0.02 1.53 16 37 H 0.05 0.82 8.14 -2.39 -0.02 0.81 16 38 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 39 H 0.07 1.36 8.14 -2.38 -0.02 1.34 16 40 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 41 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 42 H 0.14 2.25 8.14 -2.39 -0.02 2.23 16 43 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 44 H 0.13 0.91 8.14 -2.39 -0.02 0.89 16 45 H 0.13 0.53 8.14 -2.38 -0.02 0.51 16 46 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 47 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 48 H 0.04 1.89 6.06 -2.39 -0.01 1.87 16 Total: -1.00 -85.44 395.53 -3.00 -88.45 By element: Atomic # 1 Polarization: 28.72 SS G_CDS: -1.70 Total: 27.02 kcal Atomic # 6 Polarization: 17.62 SS G_CDS: 5.98 Total: 23.59 kcal Atomic # 7 Polarization: -143.83 SS G_CDS: -9.26 Total: -153.09 kcal Atomic # 8 Polarization: -31.04 SS G_CDS: -0.04 Total: -31.08 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 2.03 Total: 45.11 kcal Total: -85.44 -3.00 -88.45 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000766256519.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.199 kcal (2) G-P(sol) polarization free energy of solvation -85.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.448 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds